data_7YXK # _model_server_result.job_id tgLx-LwzysArlpL0U9JkIg _model_server_result.datetime_utc '2024-10-15 15:19:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7YXK # _exptl.entry_id 7YXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.97 _cell.angle_gamma 90 _cell.entry_id 7YXK _cell.length_a 55.384 _cell.length_b 64.568 _cell.length_c 99.559 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 24 A LEU 18 1_555 A N CSO 25 A CSO 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSO 25 A CSO 19 1_555 A N ILE 26 A ILE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C LEU 24 B LEU 18 1_555 B N CSO 25 B CSO 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C CSO 25 B CSO 19 1_555 B N ILE 26 B ILE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 181 A HIS 175 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 A OD2 ASP 183 A ASP 177 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A NE2 HIS 284 A HIS 278 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 C MN MN . A MN 501 1_555 D OAE I78 . A I78 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc5 C MN MN . A MN 501 1_555 D OAK I78 . A I78 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc6 C MN MN . A MN 501 1_555 R O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 B NE2 HIS 181 B HIS 175 1_555 L MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc8 B OD2 ASP 183 B ASP 177 1_555 L MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc9 B NE2 HIS 284 B HIS 278 1_555 L MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc10 L MN MN . B MN 501 1_555 M OAE I78 . B I78 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc11 L MN MN . B MN 501 1_555 M OAI I78 . B I78 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc12 L MN MN . B MN 501 1_555 S O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 7YXK _atom_sites.fract_transf_matrix[1][1] 0.018056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 501 501 MN MN . D 3 I78 A 1 502 601 I78 NOD . E 4 EDO A 1 503 701 EDO EDO . F 4 EDO A 1 504 801 EDO EDO . G 4 EDO A 1 505 901 EDO EDO . H 5 ACT A 1 506 1001 ACT ACT . I 4 EDO A 1 507 1101 EDO EDO . J 4 EDO A 1 508 1201 EDO EDO . K 4 EDO A 1 509 1301 EDO EDO . L 2 MN B 1 501 501 MN MN . M 3 I78 B 1 502 601 I78 NOD . N 4 EDO B 1 503 701 EDO EDO . O 4 EDO B 1 504 801 EDO EDO . P 4 EDO B 1 505 901 EDO EDO . Q 5 ACT B 1 506 1001 ACT ACT . R 6 HOH A 1 601 50 HOH HOH . R 6 HOH A 2 602 132 HOH HOH . R 6 HOH A 3 603 17 HOH HOH . R 6 HOH A 4 604 18 HOH HOH . R 6 HOH A 5 605 160 HOH HOH . R 6 HOH A 6 606 124 HOH HOH . R 6 HOH A 7 607 137 HOH HOH . R 6 HOH A 8 608 48 HOH HOH . R 6 HOH A 9 609 143 HOH HOH . R 6 HOH A 10 610 91 HOH HOH . R 6 HOH A 11 611 109 HOH HOH . R 6 HOH A 12 612 19 HOH HOH . R 6 HOH A 13 613 103 HOH HOH . R 6 HOH A 14 614 15 HOH HOH . R 6 HOH A 15 615 47 HOH HOH . R 6 HOH A 16 616 35 HOH HOH . R 6 HOH A 17 617 34 HOH HOH . R 6 HOH A 18 618 44 HOH HOH . R 6 HOH A 19 619 14 HOH HOH . R 6 HOH A 20 620 60 HOH HOH . R 6 HOH A 21 621 20 HOH HOH . R 6 HOH A 22 622 49 HOH HOH . R 6 HOH A 23 623 59 HOH HOH . R 6 HOH A 24 624 11 HOH HOH . R 6 HOH A 25 625 147 HOH HOH . R 6 HOH A 26 626 36 HOH HOH . R 6 HOH A 27 627 163 HOH HOH . R 6 HOH A 28 628 82 HOH HOH . R 6 HOH A 29 629 8 HOH HOH . R 6 HOH A 30 630 30 HOH HOH . R 6 HOH A 31 631 33 HOH HOH . R 6 HOH A 32 632 45 HOH HOH . R 6 HOH A 33 633 113 HOH HOH . R 6 HOH A 34 634 133 HOH HOH . R 6 HOH A 35 635 100 HOH HOH . R 6 HOH A 36 636 51 HOH HOH . R 6 HOH A 37 637 117 HOH HOH . R 6 HOH A 38 638 116 HOH HOH . R 6 HOH A 39 639 26 HOH HOH . R 6 HOH A 40 640 127 HOH HOH . R 6 HOH A 41 641 23 HOH HOH . R 6 HOH A 42 642 114 HOH HOH . R 6 HOH A 43 643 28 HOH HOH . R 6 HOH A 44 644 43 HOH HOH . R 6 HOH A 45 645 74 HOH HOH . R 6 HOH A 46 646 134 HOH HOH . R 6 HOH A 47 647 128 HOH HOH . R 6 HOH A 48 648 71 HOH HOH . R 6 HOH A 49 649 55 HOH HOH . R 6 HOH A 50 650 131 HOH HOH . R 6 HOH A 51 651 9 HOH HOH . R 6 HOH A 52 652 150 HOH HOH . R 6 HOH A 53 653 79 HOH HOH . R 6 HOH A 54 654 1 HOH HOH . R 6 HOH A 55 655 57 HOH HOH . R 6 HOH A 56 656 77 HOH HOH . R 6 HOH A 57 657 83 HOH HOH . R 6 HOH A 58 658 7 HOH HOH . R 6 HOH A 59 659 115 HOH HOH . R 6 HOH A 60 660 10 HOH HOH . R 6 HOH A 61 661 72 HOH HOH . R 6 HOH A 62 662 96 HOH HOH . R 6 HOH A 63 663 64 HOH HOH . R 6 HOH A 64 664 46 HOH HOH . R 6 HOH A 65 665 25 HOH HOH . R 6 HOH A 66 666 162 HOH HOH . R 6 HOH A 67 667 70 HOH HOH . R 6 HOH A 68 668 166 HOH HOH . R 6 HOH A 69 669 6 HOH HOH . R 6 HOH A 70 670 148 HOH HOH . R 6 HOH A 71 671 130 HOH HOH . R 6 HOH A 72 672 56 HOH HOH . R 6 HOH A 73 673 67 HOH HOH . R 6 HOH A 74 674 21 HOH HOH . R 6 HOH A 75 675 119 HOH HOH . R 6 HOH A 76 676 65 HOH HOH . R 6 HOH A 77 677 110 HOH HOH . R 6 HOH A 78 678 85 HOH HOH . R 6 HOH A 79 679 42 HOH HOH . R 6 HOH A 80 680 153 HOH HOH . R 6 HOH A 81 681 126 HOH HOH . R 6 HOH A 82 682 40 HOH HOH . R 6 HOH A 83 683 145 HOH HOH . R 6 HOH A 84 684 118 HOH HOH . R 6 HOH A 85 685 54 HOH HOH . R 6 HOH A 86 686 27 HOH HOH . R 6 HOH A 87 687 146 HOH HOH . R 6 HOH A 88 688 73 HOH HOH . R 6 HOH A 89 689 102 HOH HOH . R 6 HOH A 90 690 139 HOH HOH . R 6 HOH A 91 691 158 HOH HOH . R 6 HOH A 92 692 164 HOH HOH . R 6 HOH A 93 693 93 HOH HOH . R 6 HOH A 94 694 156 HOH HOH . R 6 HOH A 95 695 120 HOH HOH . R 6 HOH A 96 696 112 HOH HOH . R 6 HOH A 97 697 101 HOH HOH . R 6 HOH A 98 698 149 HOH HOH . R 6 HOH A 99 699 125 HOH HOH . R 6 HOH A 100 700 108 HOH HOH . R 6 HOH A 101 701 89 HOH HOH . R 6 HOH A 102 702 58 HOH HOH . R 6 HOH A 103 703 157 HOH HOH . R 6 HOH A 104 704 167 HOH HOH . S 6 HOH B 1 601 170 HOH HOH . S 6 HOH B 2 602 169 HOH HOH . S 6 HOH B 3 603 37 HOH HOH . S 6 HOH B 4 604 168 HOH HOH . S 6 HOH B 5 605 123 HOH HOH . S 6 HOH B 6 606 136 HOH HOH . S 6 HOH B 7 607 129 HOH HOH . S 6 HOH B 8 608 141 HOH HOH . S 6 HOH B 9 609 39 HOH HOH . S 6 HOH B 10 610 22 HOH HOH . S 6 HOH B 11 611 4 HOH HOH . S 6 HOH B 12 612 52 HOH HOH . S 6 HOH B 13 613 80 HOH HOH . S 6 HOH B 14 614 105 HOH HOH . S 6 HOH B 15 615 88 HOH HOH . S 6 HOH B 16 616 95 HOH HOH . S 6 HOH B 17 617 69 HOH HOH . S 6 HOH B 18 618 63 HOH HOH . S 6 HOH B 19 619 98 HOH HOH . S 6 HOH B 20 620 111 HOH HOH . S 6 HOH B 21 621 94 HOH HOH . S 6 HOH B 22 622 5 HOH HOH . S 6 HOH B 23 623 151 HOH HOH . S 6 HOH B 24 624 13 HOH HOH . S 6 HOH B 25 625 90 HOH HOH . S 6 HOH B 26 626 31 HOH HOH . S 6 HOH B 27 627 66 HOH HOH . S 6 HOH B 28 628 92 HOH HOH . S 6 HOH B 29 629 121 HOH HOH . S 6 HOH B 30 630 38 HOH HOH . S 6 HOH B 31 631 144 HOH HOH . S 6 HOH B 32 632 155 HOH HOH . S 6 HOH B 33 633 29 HOH HOH . S 6 HOH B 34 634 99 HOH HOH . S 6 HOH B 35 635 16 HOH HOH . S 6 HOH B 36 636 140 HOH HOH . S 6 HOH B 37 637 76 HOH HOH . S 6 HOH B 38 638 32 HOH HOH . S 6 HOH B 39 639 61 HOH HOH . S 6 HOH B 40 640 122 HOH HOH . S 6 HOH B 41 641 53 HOH HOH . S 6 HOH B 42 642 41 HOH HOH . S 6 HOH B 43 643 12 HOH HOH . S 6 HOH B 44 644 86 HOH HOH . S 6 HOH B 45 645 97 HOH HOH . S 6 HOH B 46 646 165 HOH HOH . S 6 HOH B 47 647 24 HOH HOH . S 6 HOH B 48 648 2 HOH HOH . S 6 HOH B 49 649 62 HOH HOH . S 6 HOH B 50 650 68 HOH HOH . S 6 HOH B 51 651 142 HOH HOH . S 6 HOH B 52 652 84 HOH HOH . S 6 HOH B 53 653 81 HOH HOH . S 6 HOH B 54 654 138 HOH HOH . S 6 HOH B 55 655 3 HOH HOH . S 6 HOH B 56 656 161 HOH HOH . S 6 HOH B 57 657 104 HOH HOH . S 6 HOH B 58 658 78 HOH HOH . S 6 HOH B 59 659 106 HOH HOH . S 6 HOH B 60 660 171 HOH HOH . S 6 HOH B 61 661 135 HOH HOH . S 6 HOH B 62 662 107 HOH HOH . S 6 HOH B 63 663 87 HOH HOH . S 6 HOH B 64 664 152 HOH HOH . S 6 HOH B 65 665 75 HOH HOH . S 6 HOH B 66 666 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -2.419 14.922 34.651 1 54.08 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . E 4 -1.273 14.909 33.79 1 53.49 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . E 4 -3.198 16.213 34.435 1 53.71 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . E 4 -4.373 16.209 35.255 1 53.21 ? O2 EDO 503 A 1 HETATM 5 H H11 EDO . . . E 4 -2.102 14.848 35.694 1 64.9 ? H11 EDO 503 A 1 HETATM 6 H H12 EDO . . . E 4 -3.057 14.062 34.433 1 64.9 ? H12 EDO 503 A 1 HETATM 7 H HO1 EDO . . . E 4 -0.768 14.098 33.937 1 64.19 ? HO1 EDO 503 A 1 HETATM 8 H H21 EDO . . . E 4 -3.48 16.305 33.384 1 64.45 ? H21 EDO 503 A 1 HETATM 9 H H22 EDO . . . E 4 -2.572 17.071 34.69 1 64.45 ? H22 EDO 503 A 1 HETATM 10 H HO2 EDO . . . E 4 -4.859 17.035 35.126 1 63.85 ? HO2 EDO 503 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #