data_7YXN # _model_server_result.job_id 7mrft7aFHb3vBbBET0QUDg _model_server_result.datetime_utc '2024-10-13 10:25:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 7YXN # _exptl.entry_id 7YXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YXN _cell.length_a 109.479 _cell.length_b 109.479 _cell.length_c 137.781 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K 1 1 B,D,H,I,J,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 83 n n C1 C10 DEX sing 84 n n C1 H1 DEX sing 85 n n C2 C3 DEX sing 86 n n C2 H2 DEX sing 87 n n C3 C4 DEX sing 88 n n C3 O1 DEX doub 89 n n C4 C5 DEX doub 90 n n C4 H4 DEX sing 91 n n C5 C6 DEX sing 92 n n C5 C10 DEX sing 93 n n C6 C7 DEX sing 94 n n C6 H61 DEX sing 95 n n C6 H62 DEX sing 96 n n C7 C8 DEX sing 97 n n C7 H71 DEX sing 98 n n C7 H72 DEX sing 99 n n C8 C9 DEX sing 100 n n C8 C14 DEX sing 101 n n C8 H8 DEX sing 102 n n C9 C10 DEX sing 103 n n C9 C11 DEX sing 104 n n C9 F1 DEX sing 105 n n C10 C19 DEX sing 106 n n C11 C12 DEX sing 107 n n C11 O2 DEX sing 108 n n C11 H11 DEX sing 109 n n C12 C13 DEX sing 110 n n C12 H211 DEX sing 111 n n C12 H221 DEX sing 112 n n C13 C14 DEX sing 113 n n C13 C17 DEX sing 114 n n C13 C18 DEX sing 115 n n C14 C15 DEX sing 116 n n C14 H14 DEX sing 117 n n C15 C16 DEX sing 118 n n C15 H511 DEX sing 119 n n C15 H521 DEX sing 120 n n C16 C17 DEX sing 121 n n C16 C22 DEX sing 122 n n C16 H16 DEX sing 123 n n C17 C20 DEX sing 124 n n C17 O3 DEX sing 125 n n C18 H811 DEX sing 126 n n C18 H821 DEX sing 127 n n C18 H831 DEX sing 128 n n C19 H911 DEX sing 129 n n C19 H921 DEX sing 130 n n C19 H931 DEX sing 131 n n C20 C21 DEX sing 132 n n C20 O4 DEX doub 133 n n C21 O5 DEX sing 134 n n C21 H112 DEX sing 135 n n C21 H122 DEX sing 136 n n C22 H212 DEX sing 137 n n C22 H222 DEX sing 138 n n C22 H232 DEX sing 139 n n O2 HO2 DEX sing 140 n n O3 H3 DEX sing 141 n n O5 H5 DEX sing 142 n n # _atom_sites.entry_id 7YXN _atom_sites.fract_transf_matrix[1][1] 0.009134 _atom_sites.fract_transf_matrix[1][2] 0.005274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DEX A 1 1001 1001 DEX DEX . F 4 FMT A 1 1002 1501 FMT FMT . G 4 FMT A 1 1003 1502 FMT FMT . H 3 DEX C 1 1001 1001 DEX DEX . I 4 FMT C 1 1002 1503 FMT FMT . J 4 FMT C 1 1003 1504 FMT FMT . K 5 HOH A 1 1101 2005 HOH HOH . K 5 HOH A 2 1102 2004 HOH HOH . K 5 HOH A 3 1103 2001 HOH HOH . L 5 HOH C 1 1101 2002 HOH HOH . M 5 HOH S 1 101 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . E 3 -13.367 -37.067 15.361 1 37.27 ? C1 DEX 1001 A 1 HETATM 2 C C2 DEX . . . E 3 -13.24 -35.75 15.342 1 43.24 ? C2 DEX 1001 A 1 HETATM 3 C C3 DEX . . . E 3 -12.818 -35.01 16.526 1 44.41 ? C3 DEX 1001 A 1 HETATM 4 C C4 DEX . . . E 3 -12.257 -35.797 17.602 1 42.91 ? C4 DEX 1001 A 1 HETATM 5 C C5 DEX . . . E 3 -12.263 -37.13 17.595 1 40.16 ? C5 DEX 1001 A 1 HETATM 6 C C6 DEX . . . E 3 -11.814 -37.905 18.803 1 41.46 ? C6 DEX 1001 A 1 HETATM 7 C C7 DEX . . . E 3 -12.927 -38.829 19.302 1 37.87 ? C7 DEX 1001 A 1 HETATM 8 C C8 DEX . . . E 3 -13.439 -39.708 18.152 1 41.19 ? C8 DEX 1001 A 1 HETATM 9 C C9 DEX . . . E 3 -13.92 -38.836 16.968 1 39.4 ? C9 DEX 1001 A 1 HETATM 10 C C10 DEX . . . E 3 -12.782 -37.936 16.424 1 34.82 ? C10 DEX 1001 A 1 HETATM 11 C C11 DEX . . . E 3 -14.76 -39.564 15.89 1 38.4 ? C11 DEX 1001 A 1 HETATM 12 C C12 DEX . . . E 3 -15.784 -40.526 16.491 1 38.06 ? C12 DEX 1001 A 1 HETATM 13 C C13 DEX . . . E 3 -15.186 -41.466 17.554 1 39.71 ? C13 DEX 1001 A 1 HETATM 14 C C14 DEX . . . E 3 -14.582 -40.575 18.648 1 42.15 ? C14 DEX 1001 A 1 HETATM 15 C C15 DEX . . . E 3 -14.308 -41.553 19.787 1 45.45 ? C15 DEX 1001 A 1 HETATM 16 C C16 DEX . . . E 3 -15.553 -42.472 19.782 1 45.07 ? C16 DEX 1001 A 1 HETATM 17 C C17 DEX . . . E 3 -16.258 -42.205 18.405 1 42.97 ? C17 DEX 1001 A 1 HETATM 18 C C18 DEX . . . E 3 -14.174 -42.499 17.022 1 30.47 ? C18 DEX 1001 A 1 HETATM 19 C C19 DEX . . . E 3 -11.59 -38.7 15.8 1 32.14 ? C19 DEX 1001 A 1 HETATM 20 C C20 DEX . . . E 3 -16.749 -43.451 17.69 1 43.73 ? C20 DEX 1001 A 1 HETATM 21 C C21 DEX . . . E 3 -18.065 -43.347 16.935 1 43.1 ? C21 DEX 1001 A 1 HETATM 22 C C22 DEX . . . E 3 -16.415 -42.282 21.023 1 37.28 ? C22 DEX 1001 A 1 HETATM 23 F F1 DEX . . . E 3 -14.851 -37.88 17.488 1 42.37 ? F1 DEX 1001 A 1 HETATM 24 O O1 DEX . . . E 3 -12.942 -33.783 16.615 1 51.96 ? O1 DEX 1001 A 1 HETATM 25 O O2 DEX . . . E 3 -13.886 -40.253 15.017 1 40.7 ? O2 DEX 1001 A 1 HETATM 26 O O3 DEX . . . E 3 -17.354 -41.294 18.527 1 46.49 ? O3 DEX 1001 A 1 HETATM 27 O O4 DEX . . . E 3 -16.117 -44.488 17.688 1 48.29 ? O4 DEX 1001 A 1 HETATM 28 O O5 DEX . . . E 3 -18.148 -44.396 15.961 1 39.54 ? O5 DEX 1001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 560 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #