data_7YXO # _model_server_result.job_id 3x19gPWu0C3ape-aylSzIQ _model_server_result.datetime_utc '2024-11-30 04:46:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1001}' # _entry.id 7YXO # _exptl.entry_id 7YXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YXO _cell.length_a 180.2 _cell.length_b 180.2 _cell.length_c 169.18 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,O 1 1 C,D,J,K,L,M,P 2 1 E,F,N,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 N N N # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 186 n n C1 C10 DEX sing 187 n n C1 H1 DEX sing 188 n n C2 C3 DEX sing 189 n n C2 H2 DEX sing 190 n n C3 C4 DEX sing 191 n n C3 O1 DEX doub 192 n n C4 C5 DEX doub 193 n n C4 H4 DEX sing 194 n n C5 C6 DEX sing 195 n n C5 C10 DEX sing 196 n n C6 C7 DEX sing 197 n n C6 H61 DEX sing 198 n n C6 H62 DEX sing 199 n n C7 C8 DEX sing 200 n n C7 H71 DEX sing 201 n n C7 H72 DEX sing 202 n n C8 C9 DEX sing 203 n n C8 C14 DEX sing 204 n n C8 H8 DEX sing 205 n n C9 C10 DEX sing 206 n n C9 C11 DEX sing 207 n n C9 F1 DEX sing 208 n n C10 C19 DEX sing 209 n n C11 C12 DEX sing 210 n n C11 O2 DEX sing 211 n n C11 H11 DEX sing 212 n n C12 C13 DEX sing 213 n n C12 H211 DEX sing 214 n n C12 H221 DEX sing 215 n n C13 C14 DEX sing 216 n n C13 C17 DEX sing 217 n n C13 C18 DEX sing 218 n n C14 C15 DEX sing 219 n n C14 H14 DEX sing 220 n n C15 C16 DEX sing 221 n n C15 H511 DEX sing 222 n n C15 H521 DEX sing 223 n n C16 C17 DEX sing 224 n n C16 C22 DEX sing 225 n n C16 H16 DEX sing 226 n n C17 C20 DEX sing 227 n n C17 O3 DEX sing 228 n n C18 H811 DEX sing 229 n n C18 H821 DEX sing 230 n n C18 H831 DEX sing 231 n n C19 H911 DEX sing 232 n n C19 H921 DEX sing 233 n n C19 H931 DEX sing 234 n n C20 C21 DEX sing 235 n n C20 O4 DEX doub 236 n n C21 O5 DEX sing 237 n n C21 H112 DEX sing 238 n n C21 H122 DEX sing 239 n n C22 H212 DEX sing 240 n n C22 H222 DEX sing 241 n n C22 H232 DEX sing 242 n n O2 HO2 DEX sing 243 n n O3 H3 DEX sing 244 n n O5 H5 DEX sing 245 n n # _atom_sites.entry_id 7YXO _atom_sites.fract_transf_matrix[1][1] 0.005549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 DEX A 1 1001 1001 DEX DEX . H 4 CPS A 1 1002 1501 CPS CPS . I 5 SO4 A 1 1003 2002 SO4 SO4 . J 3 DEX C 1 1001 1001 DEX DEX . K 4 CPS C 1 1002 1502 CPS CPS . L 5 SO4 C 1 1003 2001 SO4 SO4 . M 5 SO4 C 1 1004 2003 SO4 SO4 . N 3 DEX E 1 1001 1001 DEX DEX . O 6 HOH A 1 1101 3005 HOH HOH . O 6 HOH A 2 1102 3001 HOH HOH . O 6 HOH A 3 1103 3007 HOH HOH . O 6 HOH A 4 1104 3006 HOH HOH . O 6 HOH A 5 1105 3002 HOH HOH . P 6 HOH C 1 1101 3003 HOH HOH . P 6 HOH C 2 1102 3004 HOH HOH . Q 6 HOH E 1 1101 3008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . N 3 50.895 16.149 87.813 1 77.49 ? C1 DEX 1001 E 1 HETATM 2 C C2 DEX . . . N 3 50.72 16.972 86.793 1 73.48 ? C2 DEX 1001 E 1 HETATM 3 C C3 DEX . . . N 3 49.923 18.172 86.957 1 64.74 ? C3 DEX 1001 E 1 HETATM 4 C C4 DEX . . . N 3 49.788 18.656 88.316 1 62.2 ? C4 DEX 1001 E 1 HETATM 5 C C5 DEX . . . N 3 49.776 17.794 89.329 1 64.44 ? C5 DEX 1001 E 1 HETATM 6 C C6 DEX . . . N 3 49.151 18.131 90.651 1 57.33 ? C6 DEX 1001 E 1 HETATM 7 C C7 DEX . . . N 3 48.081 17.112 91.059 1 52.97 ? C7 DEX 1001 E 1 HETATM 8 C C8 DEX . . . N 3 48.481 15.654 90.79 1 58.9 ? C8 DEX 1001 E 1 HETATM 9 C C9 DEX . . . N 3 49.015 15.462 89.355 1 62.44 ? C9 DEX 1001 E 1 HETATM 10 C C10 DEX . . . N 3 50.286 16.372 89.164 1 70.25 ? C10 DEX 1001 E 1 HETATM 11 C C11 DEX . . . N 3 49.092 14.007 88.838 1 62.83 ? C11 DEX 1001 E 1 HETATM 12 C C12 DEX . . . N 3 47.833 13.198 89.201 1 68.58 ? C12 DEX 1001 E 1 HETATM 13 C C13 DEX . . . N 3 47.503 13.241 90.7 1 64.7 ? C13 DEX 1001 E 1 HETATM 14 C C14 DEX . . . N 3 47.323 14.717 91.101 1 66.89 ? C14 DEX 1001 E 1 HETATM 15 C C15 DEX . . . N 3 46.84 14.626 92.551 1 71.97 ? C15 DEX 1001 E 1 HETATM 16 C C16 DEX . . . N 3 45.831 13.455 92.517 1 67.01 ? C16 DEX 1001 E 1 HETATM 17 C C17 DEX . . . N 3 46.08 12.753 91.138 1 62.55 ? C17 DEX 1001 E 1 HETATM 18 C C18 DEX . . . N 3 48.593 12.533 91.527 1 61.84 ? C18 DEX 1001 E 1 HETATM 19 C C19 DEX . . . N 3 51.43 16.135 90.196 1 67.12 ? C19 DEX 1001 E 1 HETATM 20 C C20 DEX . . . N 3 45.946 11.238 91.227 1 70.57 ? C20 DEX 1001 E 1 HETATM 21 C C21 DEX . . . N 3 45.488 10.499 89.986 1 65.16 ? C21 DEX 1001 E 1 HETATM 22 C C22 DEX . . . N 3 44.403 13.896 92.813 1 71.98 ? C22 DEX 1001 E 1 HETATM 23 F F1 DEX . . . N 3 48.053 15.996 88.452 1 60.6 ? F1 DEX 1001 E 1 HETATM 24 O O1 DEX . . . N 3 49.365 18.709 86.001 1 69.92 ? O1 DEX 1001 E 1 HETATM 25 O O2 DEX . . . N 3 50.276 13.41 89.33 1 62.42 ? O2 DEX 1001 E 1 HETATM 26 O O3 DEX . . . N 3 45.148 13.233 90.167 1 50.9 ? O3 DEX 1001 E 1 HETATM 27 O O4 DEX . . . N 3 46.133 10.628 92.257 1 89.92 ? O4 DEX 1001 E 1 HETATM 28 O O5 DEX . . . N 3 44.816 9.317 90.353 1 51.91 ? O5 DEX 1001 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #