data_7YXP # _model_server_result.job_id vd7t3I9GfFVagJJkcLm6zg _model_server_result.datetime_utc '2024-10-13 10:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 7YXP # _exptl.entry_id 7YXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YXP _cell.length_a 178.06 _cell.length_b 178.06 _cell.length_c 178.06 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 83 n n C1 C10 DEX sing 84 n n C1 H1 DEX sing 85 n n C2 C3 DEX sing 86 n n C2 H2 DEX sing 87 n n C3 C4 DEX sing 88 n n C3 O1 DEX doub 89 n n C4 C5 DEX doub 90 n n C4 H4 DEX sing 91 n n C5 C6 DEX sing 92 n n C5 C10 DEX sing 93 n n C6 C7 DEX sing 94 n n C6 H61 DEX sing 95 n n C6 H62 DEX sing 96 n n C7 C8 DEX sing 97 n n C7 H71 DEX sing 98 n n C7 H72 DEX sing 99 n n C8 C9 DEX sing 100 n n C8 C14 DEX sing 101 n n C8 H8 DEX sing 102 n n C9 C10 DEX sing 103 n n C9 C11 DEX sing 104 n n C9 F1 DEX sing 105 n n C10 C19 DEX sing 106 n n C11 C12 DEX sing 107 n n C11 O2 DEX sing 108 n n C11 H11 DEX sing 109 n n C12 C13 DEX sing 110 n n C12 H211 DEX sing 111 n n C12 H221 DEX sing 112 n n C13 C14 DEX sing 113 n n C13 C17 DEX sing 114 n n C13 C18 DEX sing 115 n n C14 C15 DEX sing 116 n n C14 H14 DEX sing 117 n n C15 C16 DEX sing 118 n n C15 H511 DEX sing 119 n n C15 H521 DEX sing 120 n n C16 C17 DEX sing 121 n n C16 C22 DEX sing 122 n n C16 H16 DEX sing 123 n n C17 C20 DEX sing 124 n n C17 O3 DEX sing 125 n n C18 H811 DEX sing 126 n n C18 H821 DEX sing 127 n n C18 H831 DEX sing 128 n n C19 H911 DEX sing 129 n n C19 H921 DEX sing 130 n n C19 H931 DEX sing 131 n n C20 C21 DEX sing 132 n n C20 O4 DEX doub 133 n n C21 O5 DEX sing 134 n n C21 H112 DEX sing 135 n n C21 H122 DEX sing 136 n n C22 H212 DEX sing 137 n n C22 H222 DEX sing 138 n n C22 H232 DEX sing 139 n n O2 HO2 DEX sing 140 n n O3 H3 DEX sing 141 n n O5 H5 DEX sing 142 n n # _atom_sites.entry_id 7YXP _atom_sites.fract_transf_matrix[1][1] 0.005616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DEX A 1 1001 1001 DEX DEX . D 3 DEX A 1 1002 1002 DEX DEX . E 4 TRS A 1 1003 2001 TRS TRS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . D 3 13.062 -1.463 -42.517 0.5 116.46 ? C1 DEX 1002 A 1 HETATM 2 C C2 DEX . . . D 3 12.587 -0.468 -41.765 0.5 109.71 ? C2 DEX 1002 A 1 HETATM 3 C C3 DEX . . . D 3 13.331 0.792 -41.718 0.5 117.73 ? C3 DEX 1002 A 1 HETATM 4 C C4 DEX . . . D 3 14.704 0.722 -42.202 0.5 123.79 ? C4 DEX 1002 A 1 HETATM 5 C C5 DEX . . . D 3 15.078 -0.201 -43.099 0.5 129.76 ? C5 DEX 1002 A 1 HETATM 6 C C6 DEX . . . D 3 16.516 -0.247 -43.566 0.5 127.97 ? C6 DEX 1002 A 1 HETATM 7 C C7 DEX . . . D 3 16.964 -1.493 -44.337 0.5 110.88 ? C7 DEX 1002 A 1 HETATM 8 C C8 DEX . . . D 3 15.819 -2.055 -45.171 0.5 105.6 ? C8 DEX 1002 A 1 HETATM 9 C C9 DEX . . . D 3 14.735 -2.501 -44.184 0.5 113.78 ? C9 DEX 1002 A 1 HETATM 10 C C10 DEX . . . D 3 14.031 -1.184 -43.628 0.5 121.13 ? C10 DEX 1002 A 1 HETATM 11 C C11 DEX . . . D 3 13.795 -3.673 -44.603 0.5 106.15 ? C11 DEX 1002 A 1 HETATM 12 C C12 DEX . . . D 3 14.352 -4.614 -45.683 0.5 101.46 ? C12 DEX 1002 A 1 HETATM 13 C C13 DEX . . . D 3 15.086 -3.85 -46.785 0.5 105.22 ? C13 DEX 1002 A 1 HETATM 14 C C14 DEX . . . D 3 16.275 -3.166 -46.096 0.5 100.85 ? C14 DEX 1002 A 1 HETATM 15 C C15 DEX . . . D 3 17.2 -2.764 -47.243 0.5 99.51 ? C15 DEX 1002 A 1 HETATM 16 C C16 DEX . . . D 3 17.172 -3.997 -48.17 0.5 101.66 ? C16 DEX 1002 A 1 HETATM 17 C C17 DEX . . . D 3 15.798 -4.713 -47.877 0.5 105.7 ? C17 DEX 1002 A 1 HETATM 18 C C18 DEX . . . D 3 14.137 -2.85 -47.47 0.5 101.89 ? C18 DEX 1002 A 1 HETATM 19 C C19 DEX . . . D 3 13.17 -0.436 -44.692 0.5 97.67 ? C19 DEX 1002 A 1 HETATM 20 C C20 DEX . . . D 3 14.883 -4.845 -49.089 0.5 101.84 ? C20 DEX 1002 A 1 HETATM 21 C C21 DEX . . . D 3 13.403 -4.804 -48.805 0.5 90.8 ? C21 DEX 1002 A 1 HETATM 22 C C22 DEX . . . D 3 18.506 -4.739 -48.168 0.5 80.47 ? C22 DEX 1002 A 1 HETATM 23 F F1 DEX . . . D 3 15.476 -3.045 -43.093 0.5 110.89 ? F1 DEX 1002 A 1 HETATM 24 O O1 DEX . . . D 3 12.822 1.851 -41.33 0.5 103.22 ? O1 DEX 1002 A 1 HETATM 25 O O2 DEX . . . D 3 12.54 -3.148 -44.987 0.5 105.33 ? O2 DEX 1002 A 1 HETATM 26 O O3 DEX . . . D 3 15.939 -6.021 -47.314 0.5 116 ? O3 DEX 1002 A 1 HETATM 27 O O4 DEX . . . D 3 15.267 -4.961 -50.23 0.5 91.1 ? O4 DEX 1002 A 1 HETATM 28 O O5 DEX . . . D 3 12.709 -5.131 -49.982 0.5 97.05 ? O5 DEX 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #