data_7YXR # _model_server_result.job_id 3xG6eFs4W4VV4Nybn2-jTQ _model_server_result.datetime_utc '2024-10-13 08:20:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 7YXR # _exptl.entry_id 7YXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YXR _cell.length_a 107.899 _cell.length_b 107.899 _cell.length_c 134.012 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,J 1 1 B,D,F,G,H,I,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 83 n n C1 C10 DEX sing 84 n n C1 H1 DEX sing 85 n n C2 C3 DEX sing 86 n n C2 H2 DEX sing 87 n n C3 C4 DEX sing 88 n n C3 O1 DEX doub 89 n n C4 C5 DEX doub 90 n n C4 H4 DEX sing 91 n n C5 C6 DEX sing 92 n n C5 C10 DEX sing 93 n n C6 C7 DEX sing 94 n n C6 H61 DEX sing 95 n n C6 H62 DEX sing 96 n n C7 C8 DEX sing 97 n n C7 H71 DEX sing 98 n n C7 H72 DEX sing 99 n n C8 C9 DEX sing 100 n n C8 C14 DEX sing 101 n n C8 H8 DEX sing 102 n n C9 C10 DEX sing 103 n n C9 C11 DEX sing 104 n n C9 F1 DEX sing 105 n n C10 C19 DEX sing 106 n n C11 C12 DEX sing 107 n n C11 O2 DEX sing 108 n n C11 H11 DEX sing 109 n n C12 C13 DEX sing 110 n n C12 H211 DEX sing 111 n n C12 H221 DEX sing 112 n n C13 C14 DEX sing 113 n n C13 C17 DEX sing 114 n n C13 C18 DEX sing 115 n n C14 C15 DEX sing 116 n n C14 H14 DEX sing 117 n n C15 C16 DEX sing 118 n n C15 H511 DEX sing 119 n n C15 H521 DEX sing 120 n n C16 C17 DEX sing 121 n n C16 C22 DEX sing 122 n n C16 H16 DEX sing 123 n n C17 C20 DEX sing 124 n n C17 O3 DEX sing 125 n n C18 H811 DEX sing 126 n n C18 H821 DEX sing 127 n n C18 H831 DEX sing 128 n n C19 H911 DEX sing 129 n n C19 H921 DEX sing 130 n n C19 H931 DEX sing 131 n n C20 C21 DEX sing 132 n n C20 O4 DEX doub 133 n n C21 O5 DEX sing 134 n n C21 H112 DEX sing 135 n n C21 H122 DEX sing 136 n n C22 H212 DEX sing 137 n n C22 H222 DEX sing 138 n n C22 H232 DEX sing 139 n n O2 HO2 DEX sing 140 n n O3 H3 DEX sing 141 n n O5 H5 DEX sing 142 n n # _atom_sites.entry_id 7YXR _atom_sites.fract_transf_matrix[1][1] 0.009268 _atom_sites.fract_transf_matrix[1][2] 0.005351 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DEX A 1 1001 1001 DEX DEX . F 3 DEX C 1 1001 1001 DEX DEX . G 4 FMT C 1 1002 1502 FMT FMT . H 4 FMT C 1 1003 1503 FMT FMT . I 4 FMT S 1 1501 1501 FMT FMT . J 5 HOH A 1 1101 2005 HOH HOH . J 5 HOH A 2 1102 2030 HOH HOH . J 5 HOH A 3 1103 2029 HOH HOH . J 5 HOH A 4 1104 2031 HOH HOH . J 5 HOH A 5 1105 2011 HOH HOH . J 5 HOH A 6 1106 2021 HOH HOH . J 5 HOH A 7 1107 2007 HOH HOH . J 5 HOH A 8 1108 2015 HOH HOH . J 5 HOH A 9 1109 2020 HOH HOH . J 5 HOH A 10 1110 2002 HOH HOH . J 5 HOH A 11 1111 2006 HOH HOH . J 5 HOH A 12 1112 2013 HOH HOH . J 5 HOH A 13 1113 2014 HOH HOH . J 5 HOH A 14 1114 2001 HOH HOH . J 5 HOH A 15 1115 2003 HOH HOH . K 5 HOH C 1 1101 2028 HOH HOH . K 5 HOH C 2 1102 2008 HOH HOH . K 5 HOH C 3 1103 2019 HOH HOH . K 5 HOH C 4 1104 2010 HOH HOH . K 5 HOH C 5 1105 2009 HOH HOH . K 5 HOH C 6 1106 2034 HOH HOH . K 5 HOH C 7 1107 2016 HOH HOH . K 5 HOH C 8 1108 2017 HOH HOH . K 5 HOH C 9 1109 2012 HOH HOH . K 5 HOH C 10 1110 2024 HOH HOH . K 5 HOH C 11 1111 2025 HOH HOH . K 5 HOH C 12 1112 2023 HOH HOH . K 5 HOH C 13 1113 2022 HOH HOH . K 5 HOH C 14 1114 2018 HOH HOH . K 5 HOH C 15 1115 2027 HOH HOH . K 5 HOH C 16 1116 2026 HOH HOH . K 5 HOH C 17 1117 2004 HOH HOH . K 5 HOH C 18 1118 2032 HOH HOH . L 5 HOH S 1 1601 2033 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . E 3 24.444 -29.679 15.129 1 22.48 ? C1 DEX 1001 A 1 HETATM 2 C C2 DEX . . . E 3 23.275 -29.058 15.184 1 24.9 ? C2 DEX 1001 A 1 HETATM 3 C C3 DEX . . . E 3 22.902 -28.21 16.316 1 28.23 ? C3 DEX 1001 A 1 HETATM 4 C C4 DEX . . . E 3 23.847 -28.141 17.42 1 25.6 ? C4 DEX 1001 A 1 HETATM 5 C C5 DEX . . . E 3 24.972 -28.854 17.441 1 23.31 ? C5 DEX 1001 A 1 HETATM 6 C C6 DEX . . . E 3 25.816 -28.92 18.681 1 22.24 ? C6 DEX 1001 A 1 HETATM 7 C C7 DEX . . . E 3 26.064 -30.367 19.11 1 23.53 ? C7 DEX 1001 A 1 HETATM 8 C C8 DEX . . . E 3 26.585 -31.237 17.959 1 23.86 ? C8 DEX 1001 A 1 HETATM 9 C C9 DEX . . . E 3 25.625 -31.17 16.753 1 24.32 ? C9 DEX 1001 A 1 HETATM 10 C C10 DEX . . . E 3 25.433 -29.682 16.251 1 23.19 ? C10 DEX 1001 A 1 HETATM 11 C C11 DEX . . . E 3 25.835 -32.228 15.638 1 23.89 ? C11 DEX 1001 A 1 HETATM 12 C C12 DEX . . . E 3 26.113 -33.627 16.2 1 24 ? C12 DEX 1001 A 1 HETATM 13 C C13 DEX . . . E 3 27.199 -33.625 17.287 1 24.65 ? C13 DEX 1001 A 1 HETATM 14 C C14 DEX . . . E 3 26.728 -32.679 18.411 1 23.86 ? C14 DEX 1001 A 1 HETATM 15 C C15 DEX . . . E 3 27.644 -32.974 19.6 1 24.18 ? C15 DEX 1001 A 1 HETATM 16 C C16 DEX . . . E 3 27.995 -34.474 19.456 1 25.17 ? C16 DEX 1001 A 1 HETATM 17 C C17 DEX . . . E 3 27.333 -34.935 18.114 1 26.01 ? C17 DEX 1001 A 1 HETATM 18 C C18 DEX . . . E 3 28.578 -33.264 16.709 1 22.73 ? C18 DEX 1001 A 1 HETATM 19 C C19 DEX . . . E 3 26.717 -29.017 15.689 1 21.72 ? C19 DEX 1001 A 1 HETATM 20 C C20 DEX . . . E 3 28.156 -35.973 17.368 1 29.19 ? C20 DEX 1001 A 1 HETATM 21 C C21 DEX . . . E 3 27.422 -36.945 16.464 1 27.38 ? C21 DEX 1001 A 1 HETATM 22 C C22 DEX . . . E 3 27.57 -35.291 20.663 1 24.89 ? C22 DEX 1001 A 1 HETATM 23 F F1 DEX . . . E 3 24.364 -31.554 17.293 1 26.12 ? F1 DEX 1001 A 1 HETATM 24 O O1 DEX . . . E 3 21.838 -27.571 16.33 1 33.2 ? O1 DEX 1001 A 1 HETATM 25 O O2 DEX . . . E 3 26.896 -31.812 14.796 1 25.66 ? O2 DEX 1001 A 1 HETATM 26 O O3 DEX . . . E 3 26 -35.431 18.293 1 27.57 ? O3 DEX 1001 A 1 HETATM 27 O O4 DEX . . . E 3 29.365 -36.01 17.438 1 36.73 ? O4 DEX 1001 A 1 HETATM 28 O O5 DEX . . . E 3 28.324 -37.417 15.468 1 27.6 ? O5 DEX 1001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #