data_7YXR # _model_server_result.job_id Ht2j2jQbyIbC1nmBwvqRjQ _model_server_result.datetime_utc '2024-11-30 03:15:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 7YXR # _exptl.entry_id 7YXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YXR _cell.length_a 107.899 _cell.length_b 107.899 _cell.length_c 134.012 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,J 1 1 B,D,F,G,H,I,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 143 n n C O2 FMT sing 144 n n C H FMT sing 145 n n O2 HO2 FMT sing 146 n n # _atom_sites.entry_id 7YXR _atom_sites.fract_transf_matrix[1][1] 0.009268 _atom_sites.fract_transf_matrix[1][2] 0.005351 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DEX A 1 1001 1001 DEX DEX . F 3 DEX C 1 1001 1001 DEX DEX . G 4 FMT C 1 1002 1502 FMT FMT . H 4 FMT C 1 1003 1503 FMT FMT . I 4 FMT S 1 1501 1501 FMT FMT . J 5 HOH A 1 1101 2005 HOH HOH . J 5 HOH A 2 1102 2030 HOH HOH . J 5 HOH A 3 1103 2029 HOH HOH . J 5 HOH A 4 1104 2031 HOH HOH . J 5 HOH A 5 1105 2011 HOH HOH . J 5 HOH A 6 1106 2021 HOH HOH . J 5 HOH A 7 1107 2007 HOH HOH . J 5 HOH A 8 1108 2015 HOH HOH . J 5 HOH A 9 1109 2020 HOH HOH . J 5 HOH A 10 1110 2002 HOH HOH . J 5 HOH A 11 1111 2006 HOH HOH . J 5 HOH A 12 1112 2013 HOH HOH . J 5 HOH A 13 1113 2014 HOH HOH . J 5 HOH A 14 1114 2001 HOH HOH . J 5 HOH A 15 1115 2003 HOH HOH . K 5 HOH C 1 1101 2028 HOH HOH . K 5 HOH C 2 1102 2008 HOH HOH . K 5 HOH C 3 1103 2019 HOH HOH . K 5 HOH C 4 1104 2010 HOH HOH . K 5 HOH C 5 1105 2009 HOH HOH . K 5 HOH C 6 1106 2034 HOH HOH . K 5 HOH C 7 1107 2016 HOH HOH . K 5 HOH C 8 1108 2017 HOH HOH . K 5 HOH C 9 1109 2012 HOH HOH . K 5 HOH C 10 1110 2024 HOH HOH . K 5 HOH C 11 1111 2025 HOH HOH . K 5 HOH C 12 1112 2023 HOH HOH . K 5 HOH C 13 1113 2022 HOH HOH . K 5 HOH C 14 1114 2018 HOH HOH . K 5 HOH C 15 1115 2027 HOH HOH . K 5 HOH C 16 1116 2026 HOH HOH . K 5 HOH C 17 1117 2004 HOH HOH . K 5 HOH C 18 1118 2032 HOH HOH . L 5 HOH S 1 1601 2033 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . H 4 52.711 -13.897 -24.742 1 64.76 ? C FMT 1003 C 1 HETATM 2 O O1 FMT . . . H 4 52.039 -12.938 -25.078 1 59.77 ? O1 FMT 1003 C 1 HETATM 3 O O2 FMT . . . H 4 53.662 -14.451 -25.447 1 62.11 ? O2 FMT 1003 C 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 3 #