data_7YY0 # _model_server_result.job_id cM3EyxNo-NNZqrm_R5aH7A _model_server_result.datetime_utc '2025-02-17 23:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7YY0 # _exptl.entry_id 7YY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YY0 _cell.length_a 76.793 _cell.length_b 125.041 _cell.length_c 118.42 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -59.21 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 260 n n O23 HOP1 PNS sing 261 n n P24 O25 PNS sing 262 n n P24 O26 PNS doub 263 n n P24 O27 PNS sing 264 n n O25 HOP2 PNS sing 265 n n O27 C28 PNS sing 266 n n C28 C29 PNS sing 267 n n C28 H282 PNS sing 268 n n C28 H281 PNS sing 269 n n C29 C30 PNS sing 270 n n C29 C31 PNS sing 271 n n C29 C32 PNS sing 272 n n C30 H303 PNS sing 273 n n C30 H302 PNS sing 274 n n C30 H301 PNS sing 275 n n C31 H313 PNS sing 276 n n C31 H312 PNS sing 277 n n C31 H311 PNS sing 278 n n C32 O33 PNS sing 279 n n C32 C34 PNS sing 280 n n C32 H32 PNS sing 281 n n O33 H33 PNS sing 282 n n C34 O35 PNS doub 283 n n C34 N36 PNS sing 284 n n N36 C37 PNS sing 285 n n N36 H36 PNS sing 286 n n C37 C38 PNS sing 287 n n C37 H372 PNS sing 288 n n C37 H371 PNS sing 289 n n C38 C39 PNS sing 290 n n C38 H382 PNS sing 291 n n C38 H381 PNS sing 292 n n C39 O40 PNS doub 293 n n C39 N41 PNS sing 294 n n N41 C42 PNS sing 295 n n N41 H41 PNS sing 296 n n C42 C43 PNS sing 297 n n C42 H422 PNS sing 298 n n C42 H421 PNS sing 299 n n C43 S44 PNS sing 300 n n C43 H431 PNS sing 301 n n C43 H432 PNS sing 302 n n S44 H44 PNS sing 303 n n # _atom_sites.entry_id 7YY0 _atom_sites.fract_transf_matrix[1][1] 0.013022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PNS B 1 201 1 PNS PNS . E 2 PNS C 1 201 2 PNS PNS . F 3 HOH A 1 201 21 HOH HOH . F 3 HOH A 2 202 102 HOH HOH . F 3 HOH A 3 203 35 HOH HOH . F 3 HOH A 4 204 155 HOH HOH . F 3 HOH A 5 205 152 HOH HOH . F 3 HOH A 6 206 104 HOH HOH . F 3 HOH A 7 207 5 HOH HOH . F 3 HOH A 8 208 36 HOH HOH . F 3 HOH A 9 209 81 HOH HOH . F 3 HOH A 10 210 37 HOH HOH . F 3 HOH A 11 211 149 HOH HOH . F 3 HOH A 12 212 147 HOH HOH . F 3 HOH A 13 213 8 HOH HOH . F 3 HOH A 14 214 29 HOH HOH . F 3 HOH A 15 215 10 HOH HOH . F 3 HOH A 16 216 160 HOH HOH . F 3 HOH A 17 217 63 HOH HOH . F 3 HOH A 18 218 43 HOH HOH . F 3 HOH A 19 219 95 HOH HOH . F 3 HOH A 20 220 53 HOH HOH . F 3 HOH A 21 221 73 HOH HOH . F 3 HOH A 22 222 88 HOH HOH . F 3 HOH A 23 223 3 HOH HOH . F 3 HOH A 24 224 130 HOH HOH . F 3 HOH A 25 225 16 HOH HOH . F 3 HOH A 26 226 91 HOH HOH . F 3 HOH A 27 227 120 HOH HOH . F 3 HOH A 28 228 87 HOH HOH . F 3 HOH A 29 229 165 HOH HOH . F 3 HOH A 30 230 108 HOH HOH . F 3 HOH A 31 231 34 HOH HOH . F 3 HOH A 32 232 151 HOH HOH . F 3 HOH A 33 233 113 HOH HOH . F 3 HOH A 34 234 38 HOH HOH . F 3 HOH A 35 235 26 HOH HOH . F 3 HOH A 36 236 19 HOH HOH . F 3 HOH A 37 237 54 HOH HOH . F 3 HOH A 38 238 163 HOH HOH . F 3 HOH A 39 239 129 HOH HOH . F 3 HOH A 40 240 52 HOH HOH . F 3 HOH A 41 241 78 HOH HOH . F 3 HOH A 42 242 62 HOH HOH . F 3 HOH A 43 243 13 HOH HOH . F 3 HOH A 44 244 7 HOH HOH . F 3 HOH A 45 245 75 HOH HOH . F 3 HOH A 46 246 83 HOH HOH . F 3 HOH A 47 247 32 HOH HOH . F 3 HOH A 48 248 4 HOH HOH . F 3 HOH A 49 249 98 HOH HOH . F 3 HOH A 50 250 111 HOH HOH . F 3 HOH A 51 251 85 HOH HOH . F 3 HOH A 52 252 60 HOH HOH . F 3 HOH A 53 253 64 HOH HOH . F 3 HOH A 54 254 135 HOH HOH . F 3 HOH A 55 255 90 HOH HOH . F 3 HOH A 56 256 45 HOH HOH . F 3 HOH A 57 257 99 HOH HOH . F 3 HOH A 58 258 11 HOH HOH . F 3 HOH A 59 259 150 HOH HOH . F 3 HOH A 60 260 154 HOH HOH . F 3 HOH A 61 261 57 HOH HOH . F 3 HOH A 62 262 137 HOH HOH . F 3 HOH A 63 263 97 HOH HOH . F 3 HOH A 64 264 67 HOH HOH . F 3 HOH A 65 265 109 HOH HOH . F 3 HOH A 66 266 80 HOH HOH . F 3 HOH A 67 267 110 HOH HOH . F 3 HOH A 68 268 148 HOH HOH . F 3 HOH A 69 269 133 HOH HOH . G 3 HOH B 1 301 27 HOH HOH . G 3 HOH B 2 302 159 HOH HOH . G 3 HOH B 3 303 96 HOH HOH . G 3 HOH B 4 304 116 HOH HOH . G 3 HOH B 5 305 20 HOH HOH . G 3 HOH B 6 306 40 HOH HOH . G 3 HOH B 7 307 14 HOH HOH . G 3 HOH B 8 308 170 HOH HOH . G 3 HOH B 9 309 123 HOH HOH . G 3 HOH B 10 310 2 HOH HOH . G 3 HOH B 11 311 94 HOH HOH . G 3 HOH B 12 312 139 HOH HOH . G 3 HOH B 13 313 79 HOH HOH . G 3 HOH B 14 314 22 HOH HOH . G 3 HOH B 15 315 134 HOH HOH . G 3 HOH B 16 316 118 HOH HOH . G 3 HOH B 17 317 31 HOH HOH . G 3 HOH B 18 318 24 HOH HOH . G 3 HOH B 19 319 101 HOH HOH . G 3 HOH B 20 320 136 HOH HOH . G 3 HOH B 21 321 65 HOH HOH . G 3 HOH B 22 322 92 HOH HOH . G 3 HOH B 23 323 132 HOH HOH . G 3 HOH B 24 324 44 HOH HOH . G 3 HOH B 25 325 76 HOH HOH . G 3 HOH B 26 326 106 HOH HOH . G 3 HOH B 27 327 58 HOH HOH . G 3 HOH B 28 328 168 HOH HOH . G 3 HOH B 29 329 15 HOH HOH . G 3 HOH B 30 330 69 HOH HOH . G 3 HOH B 31 331 89 HOH HOH . G 3 HOH B 32 332 142 HOH HOH . G 3 HOH B 33 333 46 HOH HOH . G 3 HOH B 34 334 128 HOH HOH . G 3 HOH B 35 335 93 HOH HOH . G 3 HOH B 36 336 1 HOH HOH . G 3 HOH B 37 337 23 HOH HOH . G 3 HOH B 38 338 140 HOH HOH . G 3 HOH B 39 339 143 HOH HOH . G 3 HOH B 40 340 105 HOH HOH . G 3 HOH B 41 341 12 HOH HOH . G 3 HOH B 42 342 84 HOH HOH . G 3 HOH B 43 343 115 HOH HOH . G 3 HOH B 44 344 48 HOH HOH . G 3 HOH B 45 345 56 HOH HOH . G 3 HOH B 46 346 126 HOH HOH . G 3 HOH B 47 347 169 HOH HOH . G 3 HOH B 48 348 71 HOH HOH . G 3 HOH B 49 349 49 HOH HOH . G 3 HOH B 50 350 51 HOH HOH . G 3 HOH B 51 351 158 HOH HOH . G 3 HOH B 52 352 77 HOH HOH . G 3 HOH B 53 353 47 HOH HOH . G 3 HOH B 54 354 144 HOH HOH . G 3 HOH B 55 355 157 HOH HOH . G 3 HOH B 56 356 70 HOH HOH . G 3 HOH B 57 357 66 HOH HOH . G 3 HOH B 58 358 100 HOH HOH . G 3 HOH B 59 359 171 HOH HOH . G 3 HOH B 60 360 86 HOH HOH . G 3 HOH B 61 361 167 HOH HOH . G 3 HOH B 62 362 162 HOH HOH . G 3 HOH B 63 363 82 HOH HOH . G 3 HOH B 64 364 138 HOH HOH . H 3 HOH C 1 301 112 HOH HOH . H 3 HOH C 2 302 124 HOH HOH . H 3 HOH C 3 303 9 HOH HOH . H 3 HOH C 4 304 41 HOH HOH . H 3 HOH C 5 305 18 HOH HOH . H 3 HOH C 6 306 146 HOH HOH . H 3 HOH C 7 307 17 HOH HOH . H 3 HOH C 8 308 131 HOH HOH . H 3 HOH C 9 309 103 HOH HOH . H 3 HOH C 10 310 30 HOH HOH . H 3 HOH C 11 311 121 HOH HOH . H 3 HOH C 12 312 28 HOH HOH . H 3 HOH C 13 313 59 HOH HOH . H 3 HOH C 14 314 127 HOH HOH . H 3 HOH C 15 315 68 HOH HOH . H 3 HOH C 16 316 107 HOH HOH . H 3 HOH C 17 317 141 HOH HOH . H 3 HOH C 18 318 25 HOH HOH . H 3 HOH C 19 319 6 HOH HOH . H 3 HOH C 20 320 145 HOH HOH . H 3 HOH C 21 321 33 HOH HOH . H 3 HOH C 22 322 117 HOH HOH . H 3 HOH C 23 323 72 HOH HOH . H 3 HOH C 24 324 156 HOH HOH . H 3 HOH C 25 325 74 HOH HOH . H 3 HOH C 26 326 122 HOH HOH . H 3 HOH C 27 327 114 HOH HOH . H 3 HOH C 28 328 42 HOH HOH . H 3 HOH C 29 329 119 HOH HOH . H 3 HOH C 30 330 55 HOH HOH . H 3 HOH C 31 331 50 HOH HOH . H 3 HOH C 32 332 39 HOH HOH . H 3 HOH C 33 333 166 HOH HOH . H 3 HOH C 34 334 161 HOH HOH . H 3 HOH C 35 335 61 HOH HOH . H 3 HOH C 36 336 164 HOH HOH . H 3 HOH C 37 337 125 HOH HOH . H 3 HOH C 38 338 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . D 2 17.039 26.234 -36.58 1 55.71 ? O23 PNS 201 B 1 HETATM 2 P P24 PNS . . . D 2 18.32 26.49 -37.344 1 67.29 ? P24 PNS 201 B 1 HETATM 3 O O25 PNS . . . D 2 19.511 25.988 -36.546 1 57.18 ? O25 PNS 201 B 1 HETATM 4 O O26 PNS . . . D 2 18.309 25.763 -38.673 1 57.91 ? O26 PNS 201 B 1 HETATM 5 O O27 PNS . . . D 2 18.465 28.08 -37.611 1 53.12 ? O27 PNS 201 B 1 HETATM 6 C C28 PNS . . . D 2 18.169 28.992 -36.583 1 52.16 ? C28 PNS 201 B 1 HETATM 7 C C29 PNS . . . D 2 18.541 30.418 -37.052 1 48.02 ? C29 PNS 201 B 1 HETATM 8 C C30 PNS . . . D 2 19.978 30.402 -37.617 1 45.61 ? C30 PNS 201 B 1 HETATM 9 C C31 PNS . . . D 2 17.583 30.854 -38.138 1 39.96 ? C31 PNS 201 B 1 HETATM 10 C C32 PNS . . . D 2 18.445 31.368 -35.842 1 46.66 ? C32 PNS 201 B 1 HETATM 11 O O33 PNS . . . D 2 19.198 30.853 -34.783 1 47.76 ? O33 PNS 201 B 1 HETATM 12 C C34 PNS . . . D 2 18.924 32.774 -36.156 1 46.91 ? C34 PNS 201 B 1 HETATM 13 O O35 PNS . . . D 2 18.129 33.622 -36.576 1 40.18 ? O35 PNS 201 B 1 HETATM 14 N N36 PNS . . . D 2 20.306 33.137 -35.924 1 48.11 ? N36 PNS 201 B 1 HETATM 15 C C37 PNS . . . D 2 20.755 34.464 -36.209 1 45.74 ? C37 PNS 201 B 1 HETATM 16 C C38 PNS . . . D 2 20.768 35.288 -34.891 1 43.33 ? C38 PNS 201 B 1 HETATM 17 C C39 PNS . . . D 2 19.372 35.992 -34.737 1 45.08 ? C39 PNS 201 B 1 HETATM 18 O O40 PNS . . . D 2 18.864 36.549 -35.704 1 39.34 ? O40 PNS 201 B 1 HETATM 19 N N41 PNS . . . D 2 18.697 35.977 -33.485 1 42.22 ? N41 PNS 201 B 1 HETATM 20 C C42 PNS . . . D 2 17.431 36.624 -33.394 1 41.67 ? C42 PNS 201 B 1 HETATM 21 C C43 PNS . . . D 2 16.317 35.61 -33.539 1 38.19 ? C43 PNS 201 B 1 HETATM 22 S S44 PNS . . . D 2 14.748 36.378 -33.295 1 35.41 ? S44 PNS 201 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #