data_7YY1 # _model_server_result.job_id REfR98xMkpb507XEgu0EEA _model_server_result.datetime_utc '2024-11-28 16:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7YY1 # _exptl.entry_id 7YY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YY1 _cell.length_a 75.651 _cell.length_b 125.475 _cell.length_c 118.69 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -59.345 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 311 n n O23 HOP1 PNS sing 312 n n P24 O25 PNS sing 313 n n P24 O26 PNS doub 314 n n P24 O27 PNS sing 315 n n O25 HOP2 PNS sing 316 n n O27 C28 PNS sing 317 n n C28 C29 PNS sing 318 n n C28 H282 PNS sing 319 n n C28 H281 PNS sing 320 n n C29 C30 PNS sing 321 n n C29 C31 PNS sing 322 n n C29 C32 PNS sing 323 n n C30 H303 PNS sing 324 n n C30 H302 PNS sing 325 n n C30 H301 PNS sing 326 n n C31 H313 PNS sing 327 n n C31 H312 PNS sing 328 n n C31 H311 PNS sing 329 n n C32 O33 PNS sing 330 n n C32 C34 PNS sing 331 n n C32 H32 PNS sing 332 n n O33 H33 PNS sing 333 n n C34 O35 PNS doub 334 n n C34 N36 PNS sing 335 n n N36 C37 PNS sing 336 n n N36 H36 PNS sing 337 n n C37 C38 PNS sing 338 n n C37 H372 PNS sing 339 n n C37 H371 PNS sing 340 n n C38 C39 PNS sing 341 n n C38 H382 PNS sing 342 n n C38 H381 PNS sing 343 n n C39 O40 PNS doub 344 n n C39 N41 PNS sing 345 n n N41 C42 PNS sing 346 n n N41 H41 PNS sing 347 n n C42 C43 PNS sing 348 n n C42 H422 PNS sing 349 n n C42 H421 PNS sing 350 n n C43 S44 PNS sing 351 n n C43 H431 PNS sing 352 n n C43 H432 PNS sing 353 n n S44 H44 PNS sing 354 n n # _atom_sites.entry_id 7YY1 _atom_sites.fract_transf_matrix[1][1] 0.013219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PNS A 1 201 3 PNS PNS . E 3 APC A 1 202 3 APC LIG . F 2 PNS B 1 201 1 PNS PNS . G 3 APC B 1 202 1 APC LIG . H 2 PNS C 1 201 2 PNS PNS . I 3 APC C 1 202 2 APC LIG . J 4 HOH A 1 301 202 HOH HOH . J 4 HOH A 2 302 59 HOH HOH . J 4 HOH A 3 303 148 HOH HOH . J 4 HOH A 4 304 70 HOH HOH . J 4 HOH A 5 305 156 HOH HOH . J 4 HOH A 6 306 145 HOH HOH . J 4 HOH A 7 307 60 HOH HOH . J 4 HOH A 8 308 152 HOH HOH . J 4 HOH A 9 309 115 HOH HOH . J 4 HOH A 10 310 179 HOH HOH . J 4 HOH A 11 311 228 HOH HOH . J 4 HOH A 12 312 50 HOH HOH . J 4 HOH A 13 313 176 HOH HOH . J 4 HOH A 14 314 111 HOH HOH . J 4 HOH A 15 315 3 HOH HOH . J 4 HOH A 16 316 153 HOH HOH . J 4 HOH A 17 317 184 HOH HOH . J 4 HOH A 18 318 31 HOH HOH . J 4 HOH A 19 319 57 HOH HOH . J 4 HOH A 20 320 139 HOH HOH . J 4 HOH A 21 321 47 HOH HOH . J 4 HOH A 22 322 135 HOH HOH . J 4 HOH A 23 323 110 HOH HOH . J 4 HOH A 24 324 120 HOH HOH . J 4 HOH A 25 325 6 HOH HOH . J 4 HOH A 26 326 44 HOH HOH . J 4 HOH A 27 327 94 HOH HOH . J 4 HOH A 28 328 149 HOH HOH . J 4 HOH A 29 329 88 HOH HOH . J 4 HOH A 30 330 222 HOH HOH . J 4 HOH A 31 331 75 HOH HOH . J 4 HOH A 32 332 103 HOH HOH . J 4 HOH A 33 333 65 HOH HOH . J 4 HOH A 34 334 67 HOH HOH . J 4 HOH A 35 335 172 HOH HOH . J 4 HOH A 36 336 35 HOH HOH . J 4 HOH A 37 337 7 HOH HOH . J 4 HOH A 38 338 225 HOH HOH . J 4 HOH A 39 339 14 HOH HOH . J 4 HOH A 40 340 5 HOH HOH . J 4 HOH A 41 341 26 HOH HOH . J 4 HOH A 42 342 127 HOH HOH . J 4 HOH A 43 343 129 HOH HOH . J 4 HOH A 44 344 77 HOH HOH . J 4 HOH A 45 345 49 HOH HOH . J 4 HOH A 46 346 93 HOH HOH . J 4 HOH A 47 347 85 HOH HOH . J 4 HOH A 48 348 109 HOH HOH . J 4 HOH A 49 349 108 HOH HOH . J 4 HOH A 50 350 55 HOH HOH . J 4 HOH A 51 351 175 HOH HOH . J 4 HOH A 52 352 195 HOH HOH . J 4 HOH A 53 353 78 HOH HOH . J 4 HOH A 54 354 99 HOH HOH . J 4 HOH A 55 355 82 HOH HOH . J 4 HOH A 56 356 216 HOH HOH . J 4 HOH A 57 357 18 HOH HOH . J 4 HOH A 58 358 197 HOH HOH . J 4 HOH A 59 359 226 HOH HOH . J 4 HOH A 60 360 130 HOH HOH . J 4 HOH A 61 361 53 HOH HOH . J 4 HOH A 62 362 76 HOH HOH . J 4 HOH A 63 363 64 HOH HOH . J 4 HOH A 64 364 205 HOH HOH . J 4 HOH A 65 365 17 HOH HOH . J 4 HOH A 66 366 208 HOH HOH . J 4 HOH A 67 367 201 HOH HOH . J 4 HOH A 68 368 138 HOH HOH . J 4 HOH A 69 369 198 HOH HOH . J 4 HOH A 70 370 181 HOH HOH . J 4 HOH A 71 371 187 HOH HOH . J 4 HOH A 72 372 147 HOH HOH . J 4 HOH A 73 373 119 HOH HOH . J 4 HOH A 74 374 219 HOH HOH . J 4 HOH A 75 375 213 HOH HOH . J 4 HOH A 76 376 240 HOH HOH . J 4 HOH A 77 377 125 HOH HOH . J 4 HOH A 78 378 215 HOH HOH . J 4 HOH A 79 379 220 HOH HOH . J 4 HOH A 80 380 13 HOH HOH . J 4 HOH A 81 381 199 HOH HOH . J 4 HOH A 82 382 242 HOH HOH . J 4 HOH A 83 383 81 HOH HOH . J 4 HOH A 84 384 234 HOH HOH . J 4 HOH A 85 385 159 HOH HOH . J 4 HOH A 86 386 236 HOH HOH . J 4 HOH A 87 387 132 HOH HOH . J 4 HOH A 88 388 229 HOH HOH . J 4 HOH A 89 389 100 HOH HOH . J 4 HOH A 90 390 211 HOH HOH . J 4 HOH A 91 391 144 HOH HOH . J 4 HOH A 92 392 218 HOH HOH . J 4 HOH A 93 393 131 HOH HOH . J 4 HOH A 94 394 154 HOH HOH . J 4 HOH A 95 395 206 HOH HOH . J 4 HOH A 96 396 150 HOH HOH . J 4 HOH A 97 397 86 HOH HOH . J 4 HOH A 98 398 104 HOH HOH . J 4 HOH A 99 399 121 HOH HOH . J 4 HOH A 100 400 174 HOH HOH . K 4 HOH B 1 301 116 HOH HOH . K 4 HOH B 2 302 165 HOH HOH . K 4 HOH B 3 303 210 HOH HOH . K 4 HOH B 4 304 142 HOH HOH . K 4 HOH B 5 305 171 HOH HOH . K 4 HOH B 6 306 141 HOH HOH . K 4 HOH B 7 307 58 HOH HOH . K 4 HOH B 8 308 180 HOH HOH . K 4 HOH B 9 309 177 HOH HOH . K 4 HOH B 10 310 137 HOH HOH . K 4 HOH B 11 311 189 HOH HOH . K 4 HOH B 12 312 25 HOH HOH . K 4 HOH B 13 313 105 HOH HOH . K 4 HOH B 14 314 2 HOH HOH . K 4 HOH B 15 315 83 HOH HOH . K 4 HOH B 16 316 42 HOH HOH . K 4 HOH B 17 317 51 HOH HOH . K 4 HOH B 18 318 52 HOH HOH . K 4 HOH B 19 319 43 HOH HOH . K 4 HOH B 20 320 15 HOH HOH . K 4 HOH B 21 321 91 HOH HOH . K 4 HOH B 22 322 33 HOH HOH . K 4 HOH B 23 323 188 HOH HOH . K 4 HOH B 24 324 238 HOH HOH . K 4 HOH B 25 325 24 HOH HOH . K 4 HOH B 26 326 28 HOH HOH . K 4 HOH B 27 327 19 HOH HOH . K 4 HOH B 28 328 79 HOH HOH . K 4 HOH B 29 329 123 HOH HOH . K 4 HOH B 30 330 80 HOH HOH . K 4 HOH B 31 331 90 HOH HOH . K 4 HOH B 32 332 1 HOH HOH . K 4 HOH B 33 333 118 HOH HOH . K 4 HOH B 34 334 10 HOH HOH . K 4 HOH B 35 335 46 HOH HOH . K 4 HOH B 36 336 32 HOH HOH . K 4 HOH B 37 337 74 HOH HOH . K 4 HOH B 38 338 143 HOH HOH . K 4 HOH B 39 339 193 HOH HOH . K 4 HOH B 40 340 12 HOH HOH . K 4 HOH B 41 341 21 HOH HOH . K 4 HOH B 42 342 8 HOH HOH . K 4 HOH B 43 343 69 HOH HOH . K 4 HOH B 44 344 113 HOH HOH . K 4 HOH B 45 345 20 HOH HOH . K 4 HOH B 46 346 40 HOH HOH . K 4 HOH B 47 347 191 HOH HOH . K 4 HOH B 48 348 106 HOH HOH . K 4 HOH B 49 349 54 HOH HOH . K 4 HOH B 50 350 185 HOH HOH . K 4 HOH B 51 351 22 HOH HOH . K 4 HOH B 52 352 96 HOH HOH . K 4 HOH B 53 353 92 HOH HOH . K 4 HOH B 54 354 73 HOH HOH . K 4 HOH B 55 355 245 HOH HOH . K 4 HOH B 56 356 200 HOH HOH . K 4 HOH B 57 357 126 HOH HOH . K 4 HOH B 58 358 233 HOH HOH . K 4 HOH B 59 359 232 HOH HOH . K 4 HOH B 60 360 133 HOH HOH . K 4 HOH B 61 361 66 HOH HOH . K 4 HOH B 62 362 173 HOH HOH . K 4 HOH B 63 363 61 HOH HOH . K 4 HOH B 64 364 157 HOH HOH . K 4 HOH B 65 365 48 HOH HOH . K 4 HOH B 66 366 140 HOH HOH . K 4 HOH B 67 367 203 HOH HOH . K 4 HOH B 68 368 16 HOH HOH . K 4 HOH B 69 369 151 HOH HOH . K 4 HOH B 70 370 29 HOH HOH . K 4 HOH B 71 371 68 HOH HOH . K 4 HOH B 72 372 244 HOH HOH . K 4 HOH B 73 373 168 HOH HOH . K 4 HOH B 74 374 136 HOH HOH . K 4 HOH B 75 375 166 HOH HOH . K 4 HOH B 76 376 112 HOH HOH . K 4 HOH B 77 377 162 HOH HOH . K 4 HOH B 78 378 63 HOH HOH . K 4 HOH B 79 379 56 HOH HOH . K 4 HOH B 80 380 243 HOH HOH . K 4 HOH B 81 381 122 HOH HOH . K 4 HOH B 82 382 89 HOH HOH . K 4 HOH B 83 383 241 HOH HOH . K 4 HOH B 84 384 170 HOH HOH . K 4 HOH B 85 385 212 HOH HOH . L 4 HOH C 1 301 169 HOH HOH . L 4 HOH C 2 302 204 HOH HOH . L 4 HOH C 3 303 237 HOH HOH . L 4 HOH C 4 304 146 HOH HOH . L 4 HOH C 5 305 101 HOH HOH . L 4 HOH C 6 306 11 HOH HOH . L 4 HOH C 7 307 114 HOH HOH . L 4 HOH C 8 308 128 HOH HOH . L 4 HOH C 9 309 41 HOH HOH . L 4 HOH C 10 310 134 HOH HOH . L 4 HOH C 11 311 178 HOH HOH . L 4 HOH C 12 312 164 HOH HOH . L 4 HOH C 13 313 62 HOH HOH . L 4 HOH C 14 314 196 HOH HOH . L 4 HOH C 15 315 224 HOH HOH . L 4 HOH C 16 316 27 HOH HOH . L 4 HOH C 17 317 9 HOH HOH . L 4 HOH C 18 318 37 HOH HOH . L 4 HOH C 19 319 95 HOH HOH . L 4 HOH C 20 320 194 HOH HOH . L 4 HOH C 21 321 23 HOH HOH . L 4 HOH C 22 322 186 HOH HOH . L 4 HOH C 23 323 102 HOH HOH . L 4 HOH C 24 324 239 HOH HOH . L 4 HOH C 25 325 227 HOH HOH . L 4 HOH C 26 326 72 HOH HOH . L 4 HOH C 27 327 30 HOH HOH . L 4 HOH C 28 328 39 HOH HOH . L 4 HOH C 29 329 34 HOH HOH . L 4 HOH C 30 330 87 HOH HOH . L 4 HOH C 31 331 71 HOH HOH . L 4 HOH C 32 332 158 HOH HOH . L 4 HOH C 33 333 84 HOH HOH . L 4 HOH C 34 334 231 HOH HOH . L 4 HOH C 35 335 183 HOH HOH . L 4 HOH C 36 336 182 HOH HOH . L 4 HOH C 37 337 155 HOH HOH . L 4 HOH C 38 338 36 HOH HOH . L 4 HOH C 39 339 4 HOH HOH . L 4 HOH C 40 340 97 HOH HOH . L 4 HOH C 41 341 190 HOH HOH . L 4 HOH C 42 342 107 HOH HOH . L 4 HOH C 43 343 117 HOH HOH . L 4 HOH C 44 344 161 HOH HOH . L 4 HOH C 45 345 217 HOH HOH . L 4 HOH C 46 346 160 HOH HOH . L 4 HOH C 47 347 38 HOH HOH . L 4 HOH C 48 348 45 HOH HOH . L 4 HOH C 49 349 221 HOH HOH . L 4 HOH C 50 350 163 HOH HOH . L 4 HOH C 51 351 167 HOH HOH . L 4 HOH C 52 352 230 HOH HOH . L 4 HOH C 53 353 209 HOH HOH . L 4 HOH C 54 354 124 HOH HOH . L 4 HOH C 55 355 98 HOH HOH . L 4 HOH C 56 356 192 HOH HOH . L 4 HOH C 57 357 207 HOH HOH . L 4 HOH C 58 358 223 HOH HOH . L 4 HOH C 59 359 235 HOH HOH . L 4 HOH C 60 360 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . F 2 -14.674 -27.827 -37.739 1 58.16 ? O23 PNS 201 B 1 HETATM 2 P P24 PNS . . . F 2 -16.077 -27.758 -37.186 1 80.07 ? P24 PNS 201 B 1 HETATM 3 O O25 PNS . . . F 2 -16.18 -26.636 -36.194 1 68.23 ? O25 PNS 201 B 1 HETATM 4 O O26 PNS . . . F 2 -17.075 -27.557 -38.312 1 60.84 ? O26 PNS 201 B 1 HETATM 5 O O27 PNS . . . F 2 -16.419 -29.145 -36.441 1 73.08 ? O27 PNS 201 B 1 HETATM 6 C C28 PNS . . . F 2 -17.744 -29.267 -36.013 1 63.85 ? C28 PNS 201 B 1 HETATM 7 C C29 PNS . . . F 2 -18.401 -30.505 -36.657 1 58.37 ? C29 PNS 201 B 1 HETATM 8 C C30 PNS . . . F 2 -19.841 -30.112 -37.042 1 52.93 ? C30 PNS 201 B 1 HETATM 9 C C31 PNS . . . F 2 -17.641 -30.94 -37.892 1 45.54 ? C31 PNS 201 B 1 HETATM 10 C C32 PNS . . . F 2 -18.404 -31.6 -35.572 1 55.91 ? C32 PNS 201 B 1 HETATM 11 O O33 PNS . . . F 2 -19.191 -31.152 -34.514 1 52.43 ? O33 PNS 201 B 1 HETATM 12 C C34 PNS . . . F 2 -18.987 -32.913 -36.05 1 47.15 ? C34 PNS 201 B 1 HETATM 13 O O35 PNS . . . F 2 -18.281 -33.778 -36.573 1 34.64 ? O35 PNS 201 B 1 HETATM 14 N N36 PNS . . . F 2 -20.394 -33.149 -35.849 1 41.59 ? N36 PNS 201 B 1 HETATM 15 C C37 PNS . . . F 2 -20.977 -34.381 -36.266 1 40.52 ? C37 PNS 201 B 1 HETATM 16 C C38 PNS . . . F 2 -21.028 -35.308 -35.01 1 39.02 ? C38 PNS 201 B 1 HETATM 17 C C39 PNS . . . F 2 -19.621 -35.976 -34.759 1 43.52 ? C39 PNS 201 B 1 HETATM 18 O O40 PNS . . . F 2 -19.133 -36.702 -35.62 1 30.33 ? O40 PNS 201 B 1 HETATM 19 N N41 PNS . . . F 2 -18.931 -35.738 -33.531 1 35.58 ? N41 PNS 201 B 1 HETATM 20 C C42 PNS . . . F 2 -17.664 -36.343 -33.267 1 38.82 ? C42 PNS 201 B 1 HETATM 21 C C43 PNS . . . F 2 -16.512 -35.587 -33.893 1 31.49 ? C43 PNS 201 B 1 HETATM 22 S S44 PNS . . . F 2 -14.987 -36.344 -33.42 1 34.22 ? S44 PNS 201 B 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #