data_7YYB # _model_server_result.job_id wpj6AJEKCMd11kv2DwNqJQ _model_server_result.datetime_utc '2024-11-24 23:44:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7YYB # _exptl.entry_id 7YYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.169 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-hydroxy-6-methyl-2H-1-benzopyran-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YYB _cell.length_a 76.295 _cell.length_b 125.184 _cell.length_c 119.002 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -59.501 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H8 O3' _chem_comp.formula_weight 176.169 _chem_comp.id QX4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-hydroxy-6-methyl-2H-1-benzopyran-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C08 QX4 sing 277 n n C08 C10 QX4 doub 278 n n C08 C06 QX4 sing 279 n n C10 C11 QX4 sing 280 n n C07 C06 QX4 doub 281 n y C07 C02 QX4 sing 282 n y C06 C05 QX4 sing 283 n y C11 O12 QX4 doub 284 n n C11 O13 QX4 sing 285 n n C01 C02 QX4 sing 286 n n C02 C03 QX4 doub 287 n y C05 O13 QX4 sing 288 n n C05 C04 QX4 doub 289 n y C03 C04 QX4 sing 290 n y C10 H101 QX4 sing 291 n n C01 H013 QX4 sing 292 n n C01 H011 QX4 sing 293 n n C01 H012 QX4 sing 294 n n C03 H031 QX4 sing 295 n n C04 H041 QX4 sing 296 n n C07 H071 QX4 sing 297 n n O09 H091 QX4 sing 298 n n # _atom_sites.entry_id 7YYB _atom_sites.fract_transf_matrix[1][1] 0.013107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 QX4 B 1 201 1 QX4 LIG . E 2 QX4 C 1 201 2 QX4 LIG . F 3 HOH A 1 201 117 HOH HOH . F 3 HOH A 2 202 101 HOH HOH . F 3 HOH A 3 203 272 HOH HOH . F 3 HOH A 4 204 119 HOH HOH . F 3 HOH A 5 205 263 HOH HOH . F 3 HOH A 6 206 123 HOH HOH . F 3 HOH A 7 207 167 HOH HOH . F 3 HOH A 8 208 44 HOH HOH . F 3 HOH A 9 209 49 HOH HOH . F 3 HOH A 10 210 164 HOH HOH . F 3 HOH A 11 211 129 HOH HOH . F 3 HOH A 12 212 159 HOH HOH . F 3 HOH A 13 213 137 HOH HOH . F 3 HOH A 14 214 280 HOH HOH . F 3 HOH A 15 215 45 HOH HOH . F 3 HOH A 16 216 12 HOH HOH . F 3 HOH A 17 217 115 HOH HOH . F 3 HOH A 18 218 79 HOH HOH . F 3 HOH A 19 219 260 HOH HOH . F 3 HOH A 20 220 161 HOH HOH . F 3 HOH A 21 221 4 HOH HOH . F 3 HOH A 22 222 53 HOH HOH . F 3 HOH A 23 223 78 HOH HOH . F 3 HOH A 24 224 29 HOH HOH . F 3 HOH A 25 225 227 HOH HOH . F 3 HOH A 26 226 245 HOH HOH . F 3 HOH A 27 227 199 HOH HOH . F 3 HOH A 28 228 94 HOH HOH . F 3 HOH A 29 229 174 HOH HOH . F 3 HOH A 30 230 64 HOH HOH . F 3 HOH A 31 231 178 HOH HOH . F 3 HOH A 32 232 256 HOH HOH . F 3 HOH A 33 233 220 HOH HOH . F 3 HOH A 34 234 155 HOH HOH . F 3 HOH A 35 235 62 HOH HOH . F 3 HOH A 36 236 252 HOH HOH . F 3 HOH A 37 237 258 HOH HOH . F 3 HOH A 38 238 228 HOH HOH . F 3 HOH A 39 239 6 HOH HOH . F 3 HOH A 40 240 113 HOH HOH . F 3 HOH A 41 241 197 HOH HOH . F 3 HOH A 42 242 96 HOH HOH . F 3 HOH A 43 243 7 HOH HOH . F 3 HOH A 44 244 100 HOH HOH . F 3 HOH A 45 245 149 HOH HOH . F 3 HOH A 46 246 184 HOH HOH . F 3 HOH A 47 247 48 HOH HOH . F 3 HOH A 48 248 23 HOH HOH . F 3 HOH A 49 249 105 HOH HOH . F 3 HOH A 50 250 97 HOH HOH . F 3 HOH A 51 251 3 HOH HOH . F 3 HOH A 52 252 13 HOH HOH . F 3 HOH A 53 253 136 HOH HOH . F 3 HOH A 54 254 31 HOH HOH . F 3 HOH A 55 255 237 HOH HOH . F 3 HOH A 56 256 106 HOH HOH . F 3 HOH A 57 257 28 HOH HOH . F 3 HOH A 58 258 147 HOH HOH . F 3 HOH A 59 259 181 HOH HOH . F 3 HOH A 60 260 157 HOH HOH . F 3 HOH A 61 261 114 HOH HOH . F 3 HOH A 62 262 57 HOH HOH . F 3 HOH A 63 263 17 HOH HOH . F 3 HOH A 64 264 81 HOH HOH . F 3 HOH A 65 265 19 HOH HOH . F 3 HOH A 66 266 277 HOH HOH . F 3 HOH A 67 267 41 HOH HOH . F 3 HOH A 68 268 242 HOH HOH . F 3 HOH A 69 269 98 HOH HOH . F 3 HOH A 70 270 153 HOH HOH . F 3 HOH A 71 271 107 HOH HOH . F 3 HOH A 72 272 266 HOH HOH . F 3 HOH A 73 273 224 HOH HOH . F 3 HOH A 74 274 189 HOH HOH . F 3 HOH A 75 275 144 HOH HOH . F 3 HOH A 76 276 132 HOH HOH . F 3 HOH A 77 277 179 HOH HOH . F 3 HOH A 78 278 50 HOH HOH . F 3 HOH A 79 279 43 HOH HOH . F 3 HOH A 80 280 76 HOH HOH . F 3 HOH A 81 281 38 HOH HOH . F 3 HOH A 82 282 111 HOH HOH . F 3 HOH A 83 283 121 HOH HOH . F 3 HOH A 84 284 165 HOH HOH . F 3 HOH A 85 285 92 HOH HOH . F 3 HOH A 86 286 193 HOH HOH . F 3 HOH A 87 287 18 HOH HOH . F 3 HOH A 88 288 222 HOH HOH . F 3 HOH A 89 289 46 HOH HOH . F 3 HOH A 90 290 150 HOH HOH . F 3 HOH A 91 291 16 HOH HOH . F 3 HOH A 92 292 125 HOH HOH . F 3 HOH A 93 293 235 HOH HOH . F 3 HOH A 94 294 281 HOH HOH . F 3 HOH A 95 295 187 HOH HOH . F 3 HOH A 96 296 214 HOH HOH . F 3 HOH A 97 297 162 HOH HOH . F 3 HOH A 98 298 210 HOH HOH . F 3 HOH A 99 299 251 HOH HOH . F 3 HOH A 100 300 186 HOH HOH . F 3 HOH A 101 301 225 HOH HOH . F 3 HOH A 102 302 215 HOH HOH . F 3 HOH A 103 303 223 HOH HOH . F 3 HOH A 104 304 244 HOH HOH . F 3 HOH A 105 305 261 HOH HOH . F 3 HOH A 106 306 268 HOH HOH . F 3 HOH A 107 307 264 HOH HOH . F 3 HOH A 108 308 250 HOH HOH . F 3 HOH A 109 309 247 HOH HOH . F 3 HOH A 110 310 205 HOH HOH . G 3 HOH B 1 301 288 HOH HOH . G 3 HOH B 2 302 283 HOH HOH . G 3 HOH B 3 303 102 HOH HOH . G 3 HOH B 4 304 142 HOH HOH . G 3 HOH B 5 305 176 HOH HOH . G 3 HOH B 6 306 42 HOH HOH . G 3 HOH B 7 307 77 HOH HOH . G 3 HOH B 8 308 63 HOH HOH . G 3 HOH B 9 309 166 HOH HOH . G 3 HOH B 10 310 279 HOH HOH . G 3 HOH B 11 311 255 HOH HOH . G 3 HOH B 12 312 267 HOH HOH . G 3 HOH B 13 313 59 HOH HOH . G 3 HOH B 14 314 194 HOH HOH . G 3 HOH B 15 315 160 HOH HOH . G 3 HOH B 16 316 122 HOH HOH . G 3 HOH B 17 317 1 HOH HOH . G 3 HOH B 18 318 287 HOH HOH . G 3 HOH B 19 319 56 HOH HOH . G 3 HOH B 20 320 84 HOH HOH . G 3 HOH B 21 321 83 HOH HOH . G 3 HOH B 22 322 221 HOH HOH . G 3 HOH B 23 323 33 HOH HOH . G 3 HOH B 24 324 154 HOH HOH . G 3 HOH B 25 325 152 HOH HOH . G 3 HOH B 26 326 69 HOH HOH . G 3 HOH B 27 327 14 HOH HOH . G 3 HOH B 28 328 124 HOH HOH . G 3 HOH B 29 329 35 HOH HOH . G 3 HOH B 30 330 139 HOH HOH . G 3 HOH B 31 331 93 HOH HOH . G 3 HOH B 32 332 148 HOH HOH . G 3 HOH B 33 333 26 HOH HOH . G 3 HOH B 34 334 104 HOH HOH . G 3 HOH B 35 335 37 HOH HOH . G 3 HOH B 36 336 2 HOH HOH . G 3 HOH B 37 337 211 HOH HOH . G 3 HOH B 38 338 282 HOH HOH . G 3 HOH B 39 339 234 HOH HOH . G 3 HOH B 40 340 112 HOH HOH . G 3 HOH B 41 341 11 HOH HOH . G 3 HOH B 42 342 20 HOH HOH . G 3 HOH B 43 343 34 HOH HOH . G 3 HOH B 44 344 275 HOH HOH . G 3 HOH B 45 345 289 HOH HOH . G 3 HOH B 46 346 10 HOH HOH . G 3 HOH B 47 347 141 HOH HOH . G 3 HOH B 48 348 190 HOH HOH . G 3 HOH B 49 349 110 HOH HOH . G 3 HOH B 50 350 204 HOH HOH . G 3 HOH B 51 351 27 HOH HOH . G 3 HOH B 52 352 232 HOH HOH . G 3 HOH B 53 353 138 HOH HOH . G 3 HOH B 54 354 239 HOH HOH . G 3 HOH B 55 355 120 HOH HOH . G 3 HOH B 56 356 172 HOH HOH . G 3 HOH B 57 357 231 HOH HOH . G 3 HOH B 58 358 24 HOH HOH . G 3 HOH B 59 359 257 HOH HOH . G 3 HOH B 60 360 55 HOH HOH . G 3 HOH B 61 361 213 HOH HOH . G 3 HOH B 62 362 171 HOH HOH . G 3 HOH B 63 363 73 HOH HOH . G 3 HOH B 64 364 70 HOH HOH . G 3 HOH B 65 365 127 HOH HOH . G 3 HOH B 66 366 47 HOH HOH . G 3 HOH B 67 367 143 HOH HOH . G 3 HOH B 68 368 21 HOH HOH . G 3 HOH B 69 369 276 HOH HOH . G 3 HOH B 70 370 284 HOH HOH . G 3 HOH B 71 371 169 HOH HOH . G 3 HOH B 72 372 248 HOH HOH . G 3 HOH B 73 373 206 HOH HOH . G 3 HOH B 74 374 180 HOH HOH . G 3 HOH B 75 375 80 HOH HOH . G 3 HOH B 76 376 135 HOH HOH . G 3 HOH B 77 377 68 HOH HOH . G 3 HOH B 78 378 71 HOH HOH . G 3 HOH B 79 379 82 HOH HOH . G 3 HOH B 80 380 54 HOH HOH . G 3 HOH B 81 381 196 HOH HOH . G 3 HOH B 82 382 99 HOH HOH . G 3 HOH B 83 383 134 HOH HOH . G 3 HOH B 84 384 87 HOH HOH . G 3 HOH B 85 385 9 HOH HOH . G 3 HOH B 86 386 88 HOH HOH . G 3 HOH B 87 387 271 HOH HOH . G 3 HOH B 88 388 185 HOH HOH . G 3 HOH B 89 389 109 HOH HOH . G 3 HOH B 90 390 270 HOH HOH . G 3 HOH B 91 391 192 HOH HOH . G 3 HOH B 92 392 118 HOH HOH . G 3 HOH B 93 393 212 HOH HOH . G 3 HOH B 94 394 188 HOH HOH . G 3 HOH B 95 395 130 HOH HOH . G 3 HOH B 96 396 249 HOH HOH . H 3 HOH C 1 301 203 HOH HOH . H 3 HOH C 2 302 202 HOH HOH . H 3 HOH C 3 303 128 HOH HOH . H 3 HOH C 4 304 265 HOH HOH . H 3 HOH C 5 305 72 HOH HOH . H 3 HOH C 6 306 5 HOH HOH . H 3 HOH C 7 307 126 HOH HOH . H 3 HOH C 8 308 30 HOH HOH . H 3 HOH C 9 309 91 HOH HOH . H 3 HOH C 10 310 195 HOH HOH . H 3 HOH C 11 311 65 HOH HOH . H 3 HOH C 12 312 89 HOH HOH . H 3 HOH C 13 313 183 HOH HOH . H 3 HOH C 14 314 241 HOH HOH . H 3 HOH C 15 315 191 HOH HOH . H 3 HOH C 16 316 170 HOH HOH . H 3 HOH C 17 317 60 HOH HOH . H 3 HOH C 18 318 67 HOH HOH . H 3 HOH C 19 319 269 HOH HOH . H 3 HOH C 20 320 208 HOH HOH . H 3 HOH C 21 321 51 HOH HOH . H 3 HOH C 22 322 230 HOH HOH . H 3 HOH C 23 323 36 HOH HOH . H 3 HOH C 24 324 74 HOH HOH . H 3 HOH C 25 325 217 HOH HOH . H 3 HOH C 26 326 131 HOH HOH . H 3 HOH C 27 327 61 HOH HOH . H 3 HOH C 28 328 145 HOH HOH . H 3 HOH C 29 329 175 HOH HOH . H 3 HOH C 30 330 201 HOH HOH . H 3 HOH C 31 331 146 HOH HOH . H 3 HOH C 32 332 39 HOH HOH . H 3 HOH C 33 333 168 HOH HOH . H 3 HOH C 34 334 133 HOH HOH . H 3 HOH C 35 335 108 HOH HOH . H 3 HOH C 36 336 198 HOH HOH . H 3 HOH C 37 337 8 HOH HOH . H 3 HOH C 38 338 85 HOH HOH . H 3 HOH C 39 339 86 HOH HOH . H 3 HOH C 40 340 259 HOH HOH . H 3 HOH C 41 341 229 HOH HOH . H 3 HOH C 42 342 32 HOH HOH . H 3 HOH C 43 343 95 HOH HOH . H 3 HOH C 44 344 233 HOH HOH . H 3 HOH C 45 345 151 HOH HOH . H 3 HOH C 46 346 103 HOH HOH . H 3 HOH C 47 347 253 HOH HOH . H 3 HOH C 48 348 238 HOH HOH . H 3 HOH C 49 349 286 HOH HOH . H 3 HOH C 50 350 163 HOH HOH . H 3 HOH C 51 351 177 HOH HOH . H 3 HOH C 52 352 66 HOH HOH . H 3 HOH C 53 353 273 HOH HOH . H 3 HOH C 54 354 173 HOH HOH . H 3 HOH C 55 355 40 HOH HOH . H 3 HOH C 56 356 246 HOH HOH . H 3 HOH C 57 357 25 HOH HOH . H 3 HOH C 58 358 116 HOH HOH . H 3 HOH C 59 359 90 HOH HOH . H 3 HOH C 60 360 216 HOH HOH . H 3 HOH C 61 361 240 HOH HOH . H 3 HOH C 62 362 52 HOH HOH . H 3 HOH C 63 363 218 HOH HOH . H 3 HOH C 64 364 22 HOH HOH . H 3 HOH C 65 365 274 HOH HOH . H 3 HOH C 66 366 278 HOH HOH . H 3 HOH C 67 367 158 HOH HOH . H 3 HOH C 68 368 156 HOH HOH . H 3 HOH C 69 369 75 HOH HOH . H 3 HOH C 70 370 200 HOH HOH . H 3 HOH C 71 371 182 HOH HOH . H 3 HOH C 72 372 219 HOH HOH . H 3 HOH C 73 373 209 HOH HOH . H 3 HOH C 74 374 15 HOH HOH . H 3 HOH C 75 375 58 HOH HOH . H 3 HOH C 76 376 243 HOH HOH . H 3 HOH C 77 377 254 HOH HOH . H 3 HOH C 78 378 140 HOH HOH . H 3 HOH C 79 379 226 HOH HOH . H 3 HOH C 80 380 236 HOH HOH . H 3 HOH C 81 381 285 HOH HOH . H 3 HOH C 82 382 207 HOH HOH . H 3 HOH C 83 383 262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QX4 . . . D 2 -19.341 -30.717 -37.73 1 36.82 ? C10 QX4 201 B 1 HETATM 2 C C01 QX4 . . . D 2 -23.104 -35.154 -40.04 1 24.5 ? C01 QX4 201 B 1 HETATM 3 C C02 QX4 . . . D 2 -22.363 -33.831 -40.003 1 27.77 ? C02 QX4 201 B 1 HETATM 4 C C03 QX4 . . . D 2 -22.48 -32.908 -41.05 1 25.71 ? C03 QX4 201 B 1 HETATM 5 C C04 QX4 . . . D 2 -21.794 -31.695 -41.008 1 28.5 ? C04 QX4 201 B 1 HETATM 6 C C05 QX4 . . . D 2 -20.968 -31.396 -39.872 1 34.03 ? C05 QX4 201 B 1 HETATM 7 C C06 QX4 . . . D 2 -20.853 -32.299 -38.855 1 35.03 ? C06 QX4 201 B 1 HETATM 8 C C07 QX4 . . . D 2 -21.555 -33.538 -38.907 1 26.22 ? C07 QX4 201 B 1 HETATM 9 C C08 QX4 . . . D 2 -20.009 -31.979 -37.708 1 36.05 ? C08 QX4 201 B 1 HETATM 10 C C11 QX4 . . . D 2 -19.524 -29.867 -38.824 1 35.96 ? C11 QX4 201 B 1 HETATM 11 O O09 QX4 . . . D 2 -19.877 -32.886 -36.646 1 34.14 ? O09 QX4 201 B 1 HETATM 12 O O12 QX4 . . . D 2 -18.862 -28.623 -38.845 1 38.13 ? O12 QX4 201 B 1 HETATM 13 O O13 QX4 . . . D 2 -20.31 -30.2 -39.842 1 36.38 ? O13 QX4 201 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #