data_7YYK # _model_server_result.job_id HvLuVWAth_J-KUJdzTkB8w _model_server_result.datetime_utc '2024-11-22 23:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7YYK # _exptl.entry_id 7YYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-fucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YYK _cell.length_a 66.153 _cell.length_b 85.197 _cell.length_c 62.121 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 70 A CYS 447 1_555 A SG CYS 107 A CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 74 A CYS 451 1_555 A SG CYS 112 A CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf3 A SG CYS 85 A CYS 462 1_555 A SG CYS 97 A CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 A SG CYS 127 A CYS 504 1_555 A SG CYS 164 A CYS 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf5 A SG CYS 131 A CYS 508 1_555 A SG CYS 169 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 142 A CYS 519 1_555 A SG CYS 154 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? covale ? covale1 A OG1 THR 73 A THR 450 1_555 B C1 FUC . A FUC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale2 A OG1 THR 130 A THR 507 1_555 C C1 FUC . A FUC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-fucopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-fucose;6-deoxy-alpha-L-galactopyranose;L-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUC sing 92 n n C1 O1 FUC sing 93 n n C1 O5 FUC sing 94 n n C1 H1 FUC sing 95 n n C2 C3 FUC sing 96 n n C2 O2 FUC sing 97 n n C2 H2 FUC sing 98 n n C3 C4 FUC sing 99 n n C3 O3 FUC sing 100 n n C3 H3 FUC sing 101 n n C4 C5 FUC sing 102 n n C4 O4 FUC sing 103 n n C4 H4 FUC sing 104 n n C5 C6 FUC sing 105 n n C5 O5 FUC sing 106 n n C5 H5 FUC sing 107 n n C6 H61 FUC sing 108 n n C6 H62 FUC sing 109 n n C6 H63 FUC sing 110 n n O1 HO1 FUC sing 111 n n O2 HO2 FUC sing 112 n n O3 HO3 FUC sing 113 n n O4 HO4 FUC sing 114 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUC LFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUC a-L-fucopyranose 'COMMON NAME' GMML 1 FUC a-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUC Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7YYK _atom_sites.fract_transf_matrix[1][1] 0.015116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FUC A 1 601 1432 FUC FUL . C 2 FUC A 1 602 1489 FUC FUC . D 3 EDO A 1 603 1490 EDO EDO . E 4 HOH A 1 701 38 HOH HOH . E 4 HOH A 2 702 35 HOH HOH . E 4 HOH A 3 703 42 HOH HOH . E 4 HOH A 4 704 2 HOH HOH . E 4 HOH A 5 705 17 HOH HOH . E 4 HOH A 6 706 39 HOH HOH . E 4 HOH A 7 707 48 HOH HOH . E 4 HOH A 8 708 37 HOH HOH . E 4 HOH A 9 709 40 HOH HOH . E 4 HOH A 10 710 28 HOH HOH . E 4 HOH A 11 711 45 HOH HOH . E 4 HOH A 12 712 43 HOH HOH . E 4 HOH A 13 713 32 HOH HOH . E 4 HOH A 14 714 20 HOH HOH . E 4 HOH A 15 715 44 HOH HOH . E 4 HOH A 16 716 19 HOH HOH . E 4 HOH A 17 717 31 HOH HOH . E 4 HOH A 18 718 46 HOH HOH . E 4 HOH A 19 719 36 HOH HOH . E 4 HOH A 20 720 41 HOH HOH . E 4 HOH A 21 721 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUC . . . C 2 -36.843 53.965 9.108 1 81.32 ? C1 FUC 602 A 1 HETATM 2 C C2 FUC . . . C 2 -37.063 55.244 8.302 1 81.59 ? C2 FUC 602 A 1 HETATM 3 C C3 FUC . . . C 2 -37.991 54.926 7.12 1 81.08 ? C3 FUC 602 A 1 HETATM 4 C C4 FUC . . . C 2 -39.272 54.382 7.745 1 82.13 ? C4 FUC 602 A 1 HETATM 5 C C5 FUC . . . C 2 -38.979 53.091 8.477 1 85.83 ? C5 FUC 602 A 1 HETATM 6 C C6 FUC . . . C 2 -40.265 52.482 9.018 1 88.07 ? C6 FUC 602 A 1 HETATM 7 O O2 FUC . . . C 2 -35.801 55.797 7.921 1 82.13 ? O2 FUC 602 A 1 HETATM 8 O O3 FUC . . . C 2 -38.243 56.025 6.233 1 75.56 ? O3 FUC 602 A 1 HETATM 9 O O4 FUC . . . C 2 -39.708 55.244 8.778 1 86.9 ? O4 FUC 602 A 1 HETATM 10 O O5 FUC . . . C 2 -38.062 53.361 9.551 1 82.81 ? O5 FUC 602 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #