data_7YYO # _model_server_result.job_id qtEZCxlcD7t_nb7mb150eA _model_server_result.datetime_utc '2025-04-10 00:01:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":501}' # _entry.id 7YYO # _exptl.entry_id 7YYO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 356.115 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YYO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 R N N ? 4 T N N ? 4 V N N ? 4 X N N ? 4 Z N N ? 4 BA N N ? 4 DA N N ? 4 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CA GLY 395 A GLY 395 1_555 R O4P CAP . A CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale2 C CA GLY 395 C GLY 395 1_555 T O4P CAP . C CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 E CA GLY 395 E GLY 395 1_555 V O4P CAP . E CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale4 G CA GLY 395 G GLY 395 1_555 X O4P CAP . G CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale5 I CA GLY 395 I GLY 395 1_555 Z O5P CAP . I CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale6 K CA GLY 395 K GLY 395 1_555 BA O5P CAP . K CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale7 M CA GLY 395 M GLY 395 1_555 DA O5P CAP . M CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale8 O CA GLY 395 O GLY 395 1_555 FA O5P CAP . O CAP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? metalc ? metalc1 A O GLY 373 A GLY 373 1_555 Q MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc2 C O GLY 373 C GLY 373 1_555 S MG MG . C MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 E O GLY 373 E GLY 373 1_555 U MG MG . E MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc4 G O GLY 373 G GLY 373 1_555 W MG MG . G MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc5 I O GLY 373 I GLY 373 1_555 Y MG MG . I MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc6 K O GLY 373 K GLY 373 1_555 AA MG MG . K MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc7 M O GLY 373 M GLY 373 1_555 CA MG MG . M MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc8 O O GLY 373 O GLY 373 1_555 EA MG MG . O MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? # _chem_comp.formula 'C6 H14 O13 P2' _chem_comp.formula_weight 356.115 _chem_comp.id CAP _chem_comp.mon_nstd_flag . _chem_comp.name 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YYO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 MG A 1 500 500 MG MG . R 4 CAP A 1 501 501 CAP CAP . S 3 MG C 1 500 500 MG MG . T 4 CAP C 1 501 501 CAP CAP . U 3 MG E 1 500 500 MG MG . V 4 CAP E 1 501 501 CAP CAP . W 3 MG G 1 500 500 MG MG . X 4 CAP G 1 501 501 CAP CAP . Y 3 MG I 1 500 500 MG MG . Z 4 CAP I 1 501 501 CAP CAP . AA 3 MG K 1 500 500 MG MG . BA 4 CAP K 1 501 501 CAP CAP . CA 3 MG M 1 500 500 MG MG . DA 4 CAP M 1 501 501 CAP CAP . EA 3 MG O 1 500 500 MG MG . FA 4 CAP O 1 501 501 CAP CAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CAP . . . FA 4 134.932 98.872 170.135 1 60.63 ? C1 CAP 501 O 1 HETATM 2 C C2 CAP . . . FA 4 134.658 98.501 168.686 1 60.63 ? C2 CAP 501 O 1 HETATM 3 C C3 CAP . . . FA 4 135.64 99.19 167.754 1 60.63 ? C3 CAP 501 O 1 HETATM 4 C C4 CAP . . . FA 4 134.987 99.453 166.407 1 60.63 ? C4 CAP 501 O 1 HETATM 5 C C5 CAP . . . FA 4 135.929 100.202 165.473 1 60.63 ? C5 CAP 501 O 1 HETATM 6 C C CAP . . . FA 4 134.799 97 168.544 1 60.63 ? C CAP 501 O 1 HETATM 7 O O1 CAP . . . FA 4 133.947 98.287 170.954 1 60.63 ? O1 CAP 501 O 1 HETATM 8 O O2 CAP . . . FA 4 133.31 98.887 168.325 1 60.63 ? O2 CAP 501 O 1 HETATM 9 O O3 CAP . . . FA 4 136.038 100.414 168.325 1 60.63 ? O3 CAP 501 O 1 HETATM 10 O O4 CAP . . . FA 4 134.614 98.225 165.827 1 60.63 ? O4 CAP 501 O 1 HETATM 11 O O5 CAP . . . FA 4 136.744 101.074 166.223 1 60.63 ? O5 CAP 501 O 1 HETATM 12 O O6 CAP . . . FA 4 134.328 96.413 167.549 1 60.63 ? O6 CAP 501 O 1 HETATM 13 O O7 CAP . . . FA 4 135.384 96.342 169.428 1 60.63 ? O7 CAP 501 O 1 HETATM 14 P P1 CAP . . . FA 4 133.72 98.833 172.448 1 60.63 ? P1 CAP 501 O 1 HETATM 15 P P2 CAP . . . FA 4 136.539 102.667 166.143 1 60.63 ? P2 CAP 501 O 1 HETATM 16 O O1P CAP . . . FA 4 133.098 100.207 172.4 1 60.63 ? O1P CAP 501 O 1 HETATM 17 O O2P CAP . . . FA 4 135.069 98.92 173.115 1 60.63 ? O2P CAP 501 O 1 HETATM 18 O O3P CAP . . . FA 4 132.83 97.884 173.213 1 60.63 ? O3P CAP 501 O 1 HETATM 19 O O4P CAP . . . FA 4 137.262 103.225 164.943 1 60.63 ? O4P CAP 501 O 1 HETATM 20 O O5P CAP . . . FA 4 137.11 103.283 167.395 1 60.63 ? O5P CAP 501 O 1 HETATM 21 O O6P CAP . . . FA 4 135.067 102.972 166.037 1 60.63 ? O6P CAP 501 O 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #