data_7YYY # _model_server_result.job_id iJoHSvVP2U3AdXL6Q9rvVw _model_server_result.datetime_utc '2024-11-16 17:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 7YYY # _exptl.entry_id 7YYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.71 _cell.angle_gamma 90 _cell.entry_id 7YYY _cell.length_a 74.53 _cell.length_b 92.58 _cell.length_c 83.99 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc8 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc9 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc10 E MG MG . A MG 502 1_555 I O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc11 E MG MG . A MG 502 1_555 I O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc12 E MG MG . A MG 502 1_555 I O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc13 E MG MG . A MG 502 1_555 I O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YYY _atom_sites.fract_transf_matrix[1][1] 0.013417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001579 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 CA A 1 503 1 CA CA . G 7 GDP B 1 501 501 GDP GDP . H 8 VYT B 1 502 601 VYT XXX . I 9 HOH A 1 601 218 HOH HOH . I 9 HOH A 2 602 96 HOH HOH . I 9 HOH A 3 603 133 HOH HOH . I 9 HOH A 4 604 188 HOH HOH . I 9 HOH A 5 605 135 HOH HOH . I 9 HOH A 6 606 199 HOH HOH . I 9 HOH A 7 607 21 HOH HOH . I 9 HOH A 8 608 196 HOH HOH . I 9 HOH A 9 609 146 HOH HOH . I 9 HOH A 10 610 1 HOH HOH . I 9 HOH A 11 611 6 HOH HOH . I 9 HOH A 12 612 56 HOH HOH . I 9 HOH A 13 613 144 HOH HOH . I 9 HOH A 14 614 85 HOH HOH . I 9 HOH A 15 615 191 HOH HOH . I 9 HOH A 16 616 68 HOH HOH . I 9 HOH A 17 617 241 HOH HOH . I 9 HOH A 18 618 119 HOH HOH . I 9 HOH A 19 619 163 HOH HOH . I 9 HOH A 20 620 183 HOH HOH . I 9 HOH A 21 621 49 HOH HOH . I 9 HOH A 22 622 204 HOH HOH . I 9 HOH A 23 623 90 HOH HOH . I 9 HOH A 24 624 14 HOH HOH . I 9 HOH A 25 625 112 HOH HOH . I 9 HOH A 26 626 226 HOH HOH . I 9 HOH A 27 627 152 HOH HOH . I 9 HOH A 28 628 23 HOH HOH . I 9 HOH A 29 629 229 HOH HOH . I 9 HOH A 30 630 27 HOH HOH . I 9 HOH A 31 631 5 HOH HOH . I 9 HOH A 32 632 87 HOH HOH . I 9 HOH A 33 633 110 HOH HOH . I 9 HOH A 34 634 54 HOH HOH . I 9 HOH A 35 635 149 HOH HOH . I 9 HOH A 36 636 82 HOH HOH . I 9 HOH A 37 637 210 HOH HOH . I 9 HOH A 38 638 13 HOH HOH . I 9 HOH A 39 639 60 HOH HOH . I 9 HOH A 40 640 47 HOH HOH . I 9 HOH A 41 641 51 HOH HOH . I 9 HOH A 42 642 28 HOH HOH . I 9 HOH A 43 643 37 HOH HOH . I 9 HOH A 44 644 244 HOH HOH . I 9 HOH A 45 645 143 HOH HOH . I 9 HOH A 46 646 157 HOH HOH . I 9 HOH A 47 647 242 HOH HOH . I 9 HOH A 48 648 4 HOH HOH . I 9 HOH A 49 649 245 HOH HOH . I 9 HOH A 50 650 81 HOH HOH . I 9 HOH A 51 651 44 HOH HOH . I 9 HOH A 52 652 11 HOH HOH . I 9 HOH A 53 653 182 HOH HOH . I 9 HOH A 54 654 69 HOH HOH . I 9 HOH A 55 655 243 HOH HOH . I 9 HOH A 56 656 232 HOH HOH . I 9 HOH A 57 657 165 HOH HOH . I 9 HOH A 58 658 104 HOH HOH . I 9 HOH A 59 659 64 HOH HOH . I 9 HOH A 60 660 17 HOH HOH . I 9 HOH A 61 661 35 HOH HOH . I 9 HOH A 62 662 103 HOH HOH . I 9 HOH A 63 663 138 HOH HOH . I 9 HOH A 64 664 40 HOH HOH . I 9 HOH A 65 665 141 HOH HOH . I 9 HOH A 66 666 109 HOH HOH . I 9 HOH A 67 667 19 HOH HOH . I 9 HOH A 68 668 97 HOH HOH . I 9 HOH A 69 669 175 HOH HOH . I 9 HOH A 70 670 167 HOH HOH . I 9 HOH A 71 671 76 HOH HOH . I 9 HOH A 72 672 63 HOH HOH . I 9 HOH A 73 673 50 HOH HOH . I 9 HOH A 74 674 190 HOH HOH . I 9 HOH A 75 675 134 HOH HOH . I 9 HOH A 76 676 22 HOH HOH . I 9 HOH A 77 677 187 HOH HOH . I 9 HOH A 78 678 10 HOH HOH . I 9 HOH A 79 679 156 HOH HOH . I 9 HOH A 80 680 43 HOH HOH . I 9 HOH A 81 681 170 HOH HOH . I 9 HOH A 82 682 107 HOH HOH . I 9 HOH A 83 683 174 HOH HOH . I 9 HOH A 84 684 121 HOH HOH . I 9 HOH A 85 685 41 HOH HOH . I 9 HOH A 86 686 225 HOH HOH . I 9 HOH A 87 687 222 HOH HOH . I 9 HOH A 88 688 73 HOH HOH . I 9 HOH A 89 689 38 HOH HOH . I 9 HOH A 90 690 193 HOH HOH . I 9 HOH A 91 691 230 HOH HOH . I 9 HOH A 92 692 177 HOH HOH . I 9 HOH A 93 693 93 HOH HOH . I 9 HOH A 94 694 240 HOH HOH . I 9 HOH A 95 695 32 HOH HOH . I 9 HOH A 96 696 92 HOH HOH . I 9 HOH A 97 697 158 HOH HOH . I 9 HOH A 98 698 200 HOH HOH . I 9 HOH A 99 699 185 HOH HOH . I 9 HOH A 100 700 83 HOH HOH . I 9 HOH A 101 701 213 HOH HOH . I 9 HOH A 102 702 186 HOH HOH . I 9 HOH A 103 703 201 HOH HOH . I 9 HOH A 104 704 178 HOH HOH . J 9 HOH B 1 601 206 HOH HOH . J 9 HOH B 2 602 192 HOH HOH . J 9 HOH B 3 603 62 HOH HOH . J 9 HOH B 4 604 202 HOH HOH . J 9 HOH B 5 605 231 HOH HOH . J 9 HOH B 6 606 179 HOH HOH . J 9 HOH B 7 607 203 HOH HOH . J 9 HOH B 8 608 108 HOH HOH . J 9 HOH B 9 609 205 HOH HOH . J 9 HOH B 10 610 61 HOH HOH . J 9 HOH B 11 611 16 HOH HOH . J 9 HOH B 12 612 77 HOH HOH . J 9 HOH B 13 613 207 HOH HOH . J 9 HOH B 14 614 130 HOH HOH . J 9 HOH B 15 615 36 HOH HOH . J 9 HOH B 16 616 89 HOH HOH . J 9 HOH B 17 617 101 HOH HOH . J 9 HOH B 18 618 100 HOH HOH . J 9 HOH B 19 619 52 HOH HOH . J 9 HOH B 20 620 161 HOH HOH . J 9 HOH B 21 621 33 HOH HOH . J 9 HOH B 22 622 117 HOH HOH . J 9 HOH B 23 623 150 HOH HOH . J 9 HOH B 24 624 59 HOH HOH . J 9 HOH B 25 625 9 HOH HOH . J 9 HOH B 26 626 162 HOH HOH . J 9 HOH B 27 627 126 HOH HOH . J 9 HOH B 28 628 7 HOH HOH . J 9 HOH B 29 629 46 HOH HOH . J 9 HOH B 30 630 12 HOH HOH . J 9 HOH B 31 631 102 HOH HOH . J 9 HOH B 32 632 24 HOH HOH . J 9 HOH B 33 633 118 HOH HOH . J 9 HOH B 34 634 136 HOH HOH . J 9 HOH B 35 635 217 HOH HOH . J 9 HOH B 36 636 131 HOH HOH . J 9 HOH B 37 637 98 HOH HOH . J 9 HOH B 38 638 2 HOH HOH . J 9 HOH B 39 639 30 HOH HOH . J 9 HOH B 40 640 80 HOH HOH . J 9 HOH B 41 641 45 HOH HOH . J 9 HOH B 42 642 140 HOH HOH . J 9 HOH B 43 643 111 HOH HOH . J 9 HOH B 44 644 115 HOH HOH . J 9 HOH B 45 645 198 HOH HOH . J 9 HOH B 46 646 172 HOH HOH . J 9 HOH B 47 647 66 HOH HOH . J 9 HOH B 48 648 171 HOH HOH . J 9 HOH B 49 649 184 HOH HOH . J 9 HOH B 50 650 154 HOH HOH . J 9 HOH B 51 651 219 HOH HOH . J 9 HOH B 52 652 86 HOH HOH . J 9 HOH B 53 653 125 HOH HOH . J 9 HOH B 54 654 34 HOH HOH . J 9 HOH B 55 655 94 HOH HOH . J 9 HOH B 56 656 238 HOH HOH . J 9 HOH B 57 657 216 HOH HOH . J 9 HOH B 58 658 194 HOH HOH . J 9 HOH B 59 659 142 HOH HOH . J 9 HOH B 60 660 160 HOH HOH . J 9 HOH B 61 661 246 HOH HOH . J 9 HOH B 62 662 211 HOH HOH . J 9 HOH B 63 663 208 HOH HOH . J 9 HOH B 64 664 113 HOH HOH . J 9 HOH B 65 665 127 HOH HOH . J 9 HOH B 66 666 164 HOH HOH . J 9 HOH B 67 667 239 HOH HOH . J 9 HOH B 68 668 236 HOH HOH . J 9 HOH B 69 669 31 HOH HOH . J 9 HOH B 70 670 168 HOH HOH . J 9 HOH B 71 671 145 HOH HOH . J 9 HOH B 72 672 78 HOH HOH . J 9 HOH B 73 673 99 HOH HOH . J 9 HOH B 74 674 132 HOH HOH . J 9 HOH B 75 675 123 HOH HOH . K 9 HOH F 1 201 169 HOH HOH . K 9 HOH F 2 202 106 HOH HOH . K 9 HOH F 3 203 48 HOH HOH . K 9 HOH F 4 204 8 HOH HOH . K 9 HOH F 5 205 235 HOH HOH . K 9 HOH F 6 206 26 HOH HOH . K 9 HOH F 7 207 215 HOH HOH . K 9 HOH F 8 208 70 HOH HOH . K 9 HOH F 9 209 153 HOH HOH . K 9 HOH F 10 210 84 HOH HOH . K 9 HOH F 11 211 71 HOH HOH . K 9 HOH F 12 212 29 HOH HOH . K 9 HOH F 13 213 25 HOH HOH . K 9 HOH F 14 214 220 HOH HOH . K 9 HOH F 15 215 20 HOH HOH . K 9 HOH F 16 216 55 HOH HOH . K 9 HOH F 17 217 18 HOH HOH . K 9 HOH F 18 218 53 HOH HOH . K 9 HOH F 19 219 180 HOH HOH . K 9 HOH F 20 220 3 HOH HOH . K 9 HOH F 21 221 197 HOH HOH . K 9 HOH F 22 222 39 HOH HOH . K 9 HOH F 23 223 137 HOH HOH . K 9 HOH F 24 224 129 HOH HOH . K 9 HOH F 25 225 75 HOH HOH . K 9 HOH F 26 226 88 HOH HOH . K 9 HOH F 27 227 166 HOH HOH . K 9 HOH F 28 228 42 HOH HOH . K 9 HOH F 29 229 176 HOH HOH . K 9 HOH F 30 230 159 HOH HOH . K 9 HOH F 31 231 128 HOH HOH . K 9 HOH F 32 232 212 HOH HOH . K 9 HOH F 33 233 122 HOH HOH . K 9 HOH F 34 234 79 HOH HOH . K 9 HOH F 35 235 195 HOH HOH . K 9 HOH F 36 236 124 HOH HOH . K 9 HOH F 37 237 95 HOH HOH . K 9 HOH F 38 238 237 HOH HOH . K 9 HOH F 39 239 114 HOH HOH . K 9 HOH F 40 240 214 HOH HOH . K 9 HOH F 41 241 147 HOH HOH . K 9 HOH F 42 242 139 HOH HOH . K 9 HOH F 43 243 105 HOH HOH . K 9 HOH F 44 244 116 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x -31.861 _atom_site.Cartn_y -14.581 _atom_site.Cartn_z 34.431 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.01 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #