data_7YZ0 # _model_server_result.job_id vgl1s4UsFeU-186r2pP1Hw _model_server_result.datetime_utc '2024-11-16 19:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 7YZ0 # _exptl.entry_id 7YZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.71 _cell.angle_gamma 90 _cell.entry_id 7YZ0 _cell.length_a 74.53 _cell.length_b 92.58 _cell.length_c 83.99 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc8 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc9 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc10 E MG MG . A MG 502 1_555 I O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc11 E MG MG . A MG 502 1_555 I O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc12 E MG MG . A MG 502 1_555 I O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc13 E MG MG . A MG 502 1_555 I O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YZ0 _atom_sites.fract_transf_matrix[1][1] 0.013417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001579 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 CA A 1 503 1 CA CA . G 7 GDP B 1 501 501 GDP GDP . H 8 VYT B 1 502 601 VYT XXX . I 9 HOH A 1 601 23 HOH HOH . I 9 HOH A 2 602 217 HOH HOH . I 9 HOH A 3 603 246 HOH HOH . I 9 HOH A 4 604 143 HOH HOH . I 9 HOH A 5 605 77 HOH HOH . I 9 HOH A 6 606 35 HOH HOH . I 9 HOH A 7 607 53 HOH HOH . I 9 HOH A 8 608 84 HOH HOH . I 9 HOH A 9 609 270 HOH HOH . I 9 HOH A 10 610 214 HOH HOH . I 9 HOH A 11 611 76 HOH HOH . I 9 HOH A 12 612 177 HOH HOH . I 9 HOH A 13 613 106 HOH HOH . I 9 HOH A 14 614 194 HOH HOH . I 9 HOH A 15 615 88 HOH HOH . I 9 HOH A 16 616 87 HOH HOH . I 9 HOH A 17 617 216 HOH HOH . I 9 HOH A 18 618 215 HOH HOH . I 9 HOH A 19 619 45 HOH HOH . I 9 HOH A 20 620 255 HOH HOH . I 9 HOH A 21 621 52 HOH HOH . I 9 HOH A 22 622 156 HOH HOH . I 9 HOH A 23 623 160 HOH HOH . I 9 HOH A 24 624 57 HOH HOH . I 9 HOH A 25 625 284 HOH HOH . I 9 HOH A 26 626 1 HOH HOH . I 9 HOH A 27 627 6 HOH HOH . I 9 HOH A 28 628 85 HOH HOH . I 9 HOH A 29 629 168 HOH HOH . I 9 HOH A 30 630 19 HOH HOH . I 9 HOH A 31 631 175 HOH HOH . I 9 HOH A 32 632 178 HOH HOH . I 9 HOH A 33 633 209 HOH HOH . I 9 HOH A 34 634 80 HOH HOH . I 9 HOH A 35 635 2 HOH HOH . I 9 HOH A 36 636 266 HOH HOH . I 9 HOH A 37 637 220 HOH HOH . I 9 HOH A 38 638 28 HOH HOH . I 9 HOH A 39 639 289 HOH HOH . I 9 HOH A 40 640 227 HOH HOH . I 9 HOH A 41 641 75 HOH HOH . I 9 HOH A 42 642 234 HOH HOH . I 9 HOH A 43 643 46 HOH HOH . I 9 HOH A 44 644 260 HOH HOH . I 9 HOH A 45 645 230 HOH HOH . I 9 HOH A 46 646 74 HOH HOH . I 9 HOH A 47 647 207 HOH HOH . I 9 HOH A 48 648 290 HOH HOH . I 9 HOH A 49 649 33 HOH HOH . I 9 HOH A 50 650 235 HOH HOH . I 9 HOH A 51 651 291 HOH HOH . I 9 HOH A 52 652 272 HOH HOH . I 9 HOH A 53 653 86 HOH HOH . I 9 HOH A 54 654 236 HOH HOH . I 9 HOH A 55 655 5 HOH HOH . I 9 HOH A 56 656 107 HOH HOH . I 9 HOH A 57 657 12 HOH HOH . I 9 HOH A 58 658 132 HOH HOH . I 9 HOH A 59 659 71 HOH HOH . I 9 HOH A 60 660 146 HOH HOH . I 9 HOH A 61 661 24 HOH HOH . I 9 HOH A 62 662 285 HOH HOH . I 9 HOH A 63 663 54 HOH HOH . I 9 HOH A 64 664 3 HOH HOH . I 9 HOH A 65 665 81 HOH HOH . I 9 HOH A 66 666 62 HOH HOH . I 9 HOH A 67 667 79 HOH HOH . I 9 HOH A 68 668 149 HOH HOH . I 9 HOH A 69 669 50 HOH HOH . I 9 HOH A 70 670 70 HOH HOH . I 9 HOH A 71 671 51 HOH HOH . I 9 HOH A 72 672 171 HOH HOH . I 9 HOH A 73 673 61 HOH HOH . I 9 HOH A 74 674 229 HOH HOH . I 9 HOH A 75 675 14 HOH HOH . I 9 HOH A 76 676 129 HOH HOH . I 9 HOH A 77 677 82 HOH HOH . I 9 HOH A 78 678 32 HOH HOH . I 9 HOH A 79 679 189 HOH HOH . I 9 HOH A 80 680 20 HOH HOH . I 9 HOH A 81 681 78 HOH HOH . I 9 HOH A 82 682 126 HOH HOH . I 9 HOH A 83 683 48 HOH HOH . I 9 HOH A 84 684 122 HOH HOH . I 9 HOH A 85 685 109 HOH HOH . I 9 HOH A 86 686 55 HOH HOH . I 9 HOH A 87 687 142 HOH HOH . I 9 HOH A 88 688 118 HOH HOH . I 9 HOH A 89 689 44 HOH HOH . I 9 HOH A 90 690 232 HOH HOH . I 9 HOH A 91 691 59 HOH HOH . I 9 HOH A 92 692 141 HOH HOH . I 9 HOH A 93 693 249 HOH HOH . I 9 HOH A 94 694 127 HOH HOH . I 9 HOH A 95 695 40 HOH HOH . I 9 HOH A 96 696 154 HOH HOH . I 9 HOH A 97 697 213 HOH HOH . I 9 HOH A 98 698 169 HOH HOH . I 9 HOH A 99 699 27 HOH HOH . I 9 HOH A 100 700 287 HOH HOH . I 9 HOH A 101 701 247 HOH HOH . I 9 HOH A 102 702 243 HOH HOH . I 9 HOH A 103 703 121 HOH HOH . I 9 HOH A 104 704 96 HOH HOH . I 9 HOH A 105 705 128 HOH HOH . I 9 HOH A 106 706 37 HOH HOH . I 9 HOH A 107 707 254 HOH HOH . I 9 HOH A 108 708 102 HOH HOH . I 9 HOH A 109 709 159 HOH HOH . I 9 HOH A 110 710 244 HOH HOH . I 9 HOH A 111 711 196 HOH HOH . I 9 HOH A 112 712 233 HOH HOH . I 9 HOH A 113 713 288 HOH HOH . I 9 HOH A 114 714 193 HOH HOH . I 9 HOH A 115 715 91 HOH HOH . I 9 HOH A 116 716 108 HOH HOH . I 9 HOH A 117 717 66 HOH HOH . I 9 HOH A 118 718 123 HOH HOH . I 9 HOH A 119 719 133 HOH HOH . I 9 HOH A 120 720 65 HOH HOH . I 9 HOH A 121 721 117 HOH HOH . I 9 HOH A 122 722 36 HOH HOH . I 9 HOH A 123 723 137 HOH HOH . I 9 HOH A 124 724 252 HOH HOH . I 9 HOH A 125 725 147 HOH HOH . I 9 HOH A 126 726 208 HOH HOH . I 9 HOH A 127 727 262 HOH HOH . J 9 HOH B 1 601 271 HOH HOH . J 9 HOH B 2 602 259 HOH HOH . J 9 HOH B 3 603 42 HOH HOH . J 9 HOH B 4 604 274 HOH HOH . J 9 HOH B 5 605 39 HOH HOH . J 9 HOH B 6 606 34 HOH HOH . J 9 HOH B 7 607 18 HOH HOH . J 9 HOH B 8 608 250 HOH HOH . J 9 HOH B 9 609 16 HOH HOH . J 9 HOH B 10 610 212 HOH HOH . J 9 HOH B 11 611 219 HOH HOH . J 9 HOH B 12 612 64 HOH HOH . J 9 HOH B 13 613 241 HOH HOH . J 9 HOH B 14 614 268 HOH HOH . J 9 HOH B 15 615 131 HOH HOH . J 9 HOH B 16 616 264 HOH HOH . J 9 HOH B 17 617 166 HOH HOH . J 9 HOH B 18 618 206 HOH HOH . J 9 HOH B 19 619 119 HOH HOH . J 9 HOH B 20 620 38 HOH HOH . J 9 HOH B 21 621 173 HOH HOH . J 9 HOH B 22 622 245 HOH HOH . J 9 HOH B 23 623 278 HOH HOH . J 9 HOH B 24 624 267 HOH HOH . J 9 HOH B 25 625 4 HOH HOH . J 9 HOH B 26 626 17 HOH HOH . J 9 HOH B 27 627 179 HOH HOH . J 9 HOH B 28 628 110 HOH HOH . J 9 HOH B 29 629 111 HOH HOH . J 9 HOH B 30 630 188 HOH HOH . J 9 HOH B 31 631 152 HOH HOH . J 9 HOH B 32 632 90 HOH HOH . J 9 HOH B 33 633 68 HOH HOH . J 9 HOH B 34 634 73 HOH HOH . J 9 HOH B 35 635 22 HOH HOH . J 9 HOH B 36 636 26 HOH HOH . J 9 HOH B 37 637 25 HOH HOH . J 9 HOH B 38 638 116 HOH HOH . J 9 HOH B 39 639 56 HOH HOH . J 9 HOH B 40 640 11 HOH HOH . J 9 HOH B 41 641 153 HOH HOH . J 9 HOH B 42 642 113 HOH HOH . J 9 HOH B 43 643 30 HOH HOH . J 9 HOH B 44 644 49 HOH HOH . J 9 HOH B 45 645 9 HOH HOH . J 9 HOH B 46 646 136 HOH HOH . J 9 HOH B 47 647 181 HOH HOH . J 9 HOH B 48 648 93 HOH HOH . J 9 HOH B 49 649 94 HOH HOH . J 9 HOH B 50 650 97 HOH HOH . J 9 HOH B 51 651 8 HOH HOH . J 9 HOH B 52 652 69 HOH HOH . J 9 HOH B 53 653 63 HOH HOH . J 9 HOH B 54 654 89 HOH HOH . J 9 HOH B 55 655 145 HOH HOH . J 9 HOH B 56 656 105 HOH HOH . J 9 HOH B 57 657 43 HOH HOH . J 9 HOH B 58 658 165 HOH HOH . J 9 HOH B 59 659 7 HOH HOH . J 9 HOH B 60 660 114 HOH HOH . J 9 HOH B 61 661 104 HOH HOH . J 9 HOH B 62 662 253 HOH HOH . J 9 HOH B 63 663 242 HOH HOH . J 9 HOH B 64 664 134 HOH HOH . J 9 HOH B 65 665 60 HOH HOH . J 9 HOH B 66 666 150 HOH HOH . J 9 HOH B 67 667 72 HOH HOH . J 9 HOH B 68 668 161 HOH HOH . J 9 HOH B 69 669 144 HOH HOH . J 9 HOH B 70 670 184 HOH HOH . J 9 HOH B 71 671 170 HOH HOH . J 9 HOH B 72 672 205 HOH HOH . J 9 HOH B 73 673 101 HOH HOH . J 9 HOH B 74 674 201 HOH HOH . J 9 HOH B 75 675 275 HOH HOH . J 9 HOH B 76 676 192 HOH HOH . J 9 HOH B 77 677 172 HOH HOH . J 9 HOH B 78 678 120 HOH HOH . J 9 HOH B 79 679 199 HOH HOH . J 9 HOH B 80 680 197 HOH HOH . J 9 HOH B 81 681 135 HOH HOH . J 9 HOH B 82 682 283 HOH HOH . J 9 HOH B 83 683 112 HOH HOH . J 9 HOH B 84 684 155 HOH HOH . J 9 HOH B 85 685 176 HOH HOH . J 9 HOH B 86 686 174 HOH HOH . J 9 HOH B 87 687 200 HOH HOH . J 9 HOH B 88 688 248 HOH HOH . J 9 HOH B 89 689 186 HOH HOH . J 9 HOH B 90 690 204 HOH HOH . J 9 HOH B 91 691 151 HOH HOH . J 9 HOH B 92 692 130 HOH HOH . J 9 HOH B 93 693 286 HOH HOH . J 9 HOH B 94 694 98 HOH HOH . K 9 HOH F 1 201 226 HOH HOH . K 9 HOH F 2 202 185 HOH HOH . K 9 HOH F 3 203 99 HOH HOH . K 9 HOH F 4 204 211 HOH HOH . K 9 HOH F 5 205 13 HOH HOH . K 9 HOH F 6 206 140 HOH HOH . K 9 HOH F 7 207 95 HOH HOH . K 9 HOH F 8 208 29 HOH HOH . K 9 HOH F 9 209 138 HOH HOH . K 9 HOH F 10 210 163 HOH HOH . K 9 HOH F 11 211 10 HOH HOH . K 9 HOH F 12 212 225 HOH HOH . K 9 HOH F 13 213 139 HOH HOH . K 9 HOH F 14 214 67 HOH HOH . K 9 HOH F 15 215 158 HOH HOH . K 9 HOH F 16 216 21 HOH HOH . K 9 HOH F 17 217 47 HOH HOH . K 9 HOH F 18 218 148 HOH HOH . K 9 HOH F 19 219 15 HOH HOH . K 9 HOH F 20 220 83 HOH HOH . K 9 HOH F 21 221 224 HOH HOH . K 9 HOH F 22 222 31 HOH HOH . K 9 HOH F 23 223 183 HOH HOH . K 9 HOH F 24 224 198 HOH HOH . K 9 HOH F 25 225 162 HOH HOH . K 9 HOH F 26 226 167 HOH HOH . K 9 HOH F 27 227 182 HOH HOH . K 9 HOH F 28 228 256 HOH HOH . K 9 HOH F 29 229 124 HOH HOH . K 9 HOH F 30 230 41 HOH HOH . K 9 HOH F 31 231 58 HOH HOH . K 9 HOH F 32 232 187 HOH HOH . K 9 HOH F 33 233 157 HOH HOH . K 9 HOH F 34 234 125 HOH HOH . K 9 HOH F 35 235 223 HOH HOH . K 9 HOH F 36 236 228 HOH HOH . K 9 HOH F 37 237 221 HOH HOH . K 9 HOH F 38 238 180 HOH HOH . K 9 HOH F 39 239 210 HOH HOH . K 9 HOH F 40 240 190 HOH HOH . K 9 HOH F 41 241 251 HOH HOH . K 9 HOH F 42 242 258 HOH HOH . K 9 HOH F 43 243 269 HOH HOH . K 9 HOH F 44 244 265 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x -32.047 _atom_site.Cartn_y -14.485 _atom_site.Cartn_z 34.313 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.79 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #