data_7YZ2
#
_model_server_result.job_id            Ajeivd_rm9z10_RoWQcPqQ 
_model_server_result.datetime_utc      '2025-06-23 08:37:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yz2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    7YZ2 
#
_exptl.entry_id    7YZ2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.71 
_cell.angle_gamma         90 
_cell.entry_id            7YZ2 
_cell.length_a            74.53 
_cell.length_b            92.58 
_cell.length_c            83.99 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YZ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc3 E MG MG . A MG 502 1_555 G O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc4 E MG MG . A MG 502 1_555 G O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc5 E MG MG . A MG 502 1_555 G O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7YZ2 
_atom_sites.fract_transf_matrix[1][1]    0.013417 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001579 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 501 501 GTP GTP . 
E 5 MG A 1 502 502 MG MG . 
F 6 GDP B 1 501 501 GDP GDP . 
G 7 HOH A 1 601 60 HOH HOH . 
G 7 HOH A 2 602 154 HOH HOH . 
G 7 HOH A 3 603 162 HOH HOH . 
G 7 HOH A 4 604 26 HOH HOH . 
G 7 HOH A 5 605 189 HOH HOH . 
G 7 HOH A 6 606 150 HOH HOH . 
G 7 HOH A 7 607 111 HOH HOH . 
G 7 HOH A 8 608 164 HOH HOH . 
G 7 HOH A 9 609 196 HOH HOH . 
G 7 HOH A 10 610 44 HOH HOH . 
G 7 HOH A 11 611 112 HOH HOH . 
G 7 HOH A 12 612 13 HOH HOH . 
G 7 HOH A 13 613 1 HOH HOH . 
G 7 HOH A 14 614 166 HOH HOH . 
G 7 HOH A 15 615 43 HOH HOH . 
G 7 HOH A 16 616 16 HOH HOH . 
G 7 HOH A 17 617 4 HOH HOH . 
G 7 HOH A 18 618 210 HOH HOH . 
G 7 HOH A 19 619 66 HOH HOH . 
G 7 HOH A 20 620 48 HOH HOH . 
G 7 HOH A 21 621 202 HOH HOH . 
G 7 HOH A 22 622 197 HOH HOH . 
G 7 HOH A 23 623 55 HOH HOH . 
G 7 HOH A 24 624 27 HOH HOH . 
G 7 HOH A 25 625 181 HOH HOH . 
G 7 HOH A 26 626 212 HOH HOH . 
G 7 HOH A 27 627 25 HOH HOH . 
G 7 HOH A 28 628 122 HOH HOH . 
G 7 HOH A 29 629 12 HOH HOH . 
G 7 HOH A 30 630 62 HOH HOH . 
G 7 HOH A 31 631 159 HOH HOH . 
G 7 HOH A 32 632 96 HOH HOH . 
G 7 HOH A 33 633 15 HOH HOH . 
G 7 HOH A 34 634 104 HOH HOH . 
G 7 HOH A 35 635 65 HOH HOH . 
G 7 HOH A 36 636 49 HOH HOH . 
G 7 HOH A 37 637 77 HOH HOH . 
G 7 HOH A 38 638 40 HOH HOH . 
G 7 HOH A 39 639 58 HOH HOH . 
G 7 HOH A 40 640 101 HOH HOH . 
G 7 HOH A 41 641 119 HOH HOH . 
G 7 HOH A 42 642 90 HOH HOH . 
G 7 HOH A 43 643 36 HOH HOH . 
G 7 HOH A 44 644 137 HOH HOH . 
G 7 HOH A 45 645 11 HOH HOH . 
G 7 HOH A 46 646 130 HOH HOH . 
G 7 HOH A 47 647 68 HOH HOH . 
G 7 HOH A 48 648 132 HOH HOH . 
G 7 HOH A 49 649 45 HOH HOH . 
G 7 HOH A 50 650 186 HOH HOH . 
G 7 HOH A 51 651 138 HOH HOH . 
G 7 HOH A 52 652 51 HOH HOH . 
G 7 HOH A 53 653 103 HOH HOH . 
G 7 HOH A 54 654 41 HOH HOH . 
G 7 HOH A 55 655 120 HOH HOH . 
G 7 HOH A 56 656 187 HOH HOH . 
G 7 HOH A 57 657 17 HOH HOH . 
G 7 HOH A 58 658 108 HOH HOH . 
G 7 HOH A 59 659 29 HOH HOH . 
G 7 HOH A 60 660 144 HOH HOH . 
G 7 HOH A 61 661 57 HOH HOH . 
G 7 HOH A 62 662 141 HOH HOH . 
G 7 HOH A 63 663 99 HOH HOH . 
G 7 HOH A 64 664 165 HOH HOH . 
G 7 HOH A 65 665 191 HOH HOH . 
G 7 HOH A 66 666 14 HOH HOH . 
G 7 HOH A 67 667 54 HOH HOH . 
G 7 HOH A 68 668 80 HOH HOH . 
G 7 HOH A 69 669 83 HOH HOH . 
G 7 HOH A 70 670 209 HOH HOH . 
G 7 HOH A 71 671 158 HOH HOH . 
G 7 HOH A 72 672 73 HOH HOH . 
G 7 HOH A 73 673 180 HOH HOH . 
G 7 HOH A 74 674 211 HOH HOH . 
G 7 HOH A 75 675 153 HOH HOH . 
G 7 HOH A 76 676 110 HOH HOH . 
G 7 HOH A 77 677 128 HOH HOH . 
G 7 HOH A 78 678 115 HOH HOH . 
G 7 HOH A 79 679 53 HOH HOH . 
G 7 HOH A 80 680 206 HOH HOH . 
G 7 HOH A 81 681 177 HOH HOH . 
G 7 HOH A 82 682 157 HOH HOH . 
G 7 HOH A 83 683 67 HOH HOH . 
G 7 HOH A 84 684 151 HOH HOH . 
G 7 HOH A 85 685 193 HOH HOH . 
G 7 HOH A 86 686 201 HOH HOH . 
G 7 HOH A 87 687 179 HOH HOH . 
G 7 HOH A 88 688 176 HOH HOH . 
G 7 HOH A 89 689 136 HOH HOH . 
G 7 HOH A 90 690 74 HOH HOH . 
G 7 HOH A 91 691 125 HOH HOH . 
G 7 HOH A 92 692 129 HOH HOH . 
G 7 HOH A 93 693 102 HOH HOH . 
G 7 HOH A 94 694 175 HOH HOH . 
G 7 HOH A 95 695 178 HOH HOH . 
G 7 HOH A 96 696 160 HOH HOH . 
G 7 HOH A 97 697 134 HOH HOH . 
G 7 HOH A 98 698 143 HOH HOH . 
G 7 HOH A 99 699 135 HOH HOH . 
G 7 HOH A 100 700 161 HOH HOH . 
G 7 HOH A 101 701 207 HOH HOH . 
G 7 HOH A 102 702 139 HOH HOH . 
G 7 HOH A 103 703 89 HOH HOH . 
G 7 HOH A 104 704 70 HOH HOH . 
G 7 HOH A 105 705 140 HOH HOH . 
G 7 HOH A 106 706 142 HOH HOH . 
H 7 HOH B 1 601 203 HOH HOH . 
H 7 HOH B 2 602 39 HOH HOH . 
H 7 HOH B 3 603 47 HOH HOH . 
H 7 HOH B 4 604 78 HOH HOH . 
H 7 HOH B 5 605 182 HOH HOH . 
H 7 HOH B 6 606 76 HOH HOH . 
H 7 HOH B 7 607 3 HOH HOH . 
H 7 HOH B 8 608 95 HOH HOH . 
H 7 HOH B 9 609 124 HOH HOH . 
H 7 HOH B 10 610 87 HOH HOH . 
H 7 HOH B 11 611 127 HOH HOH . 
H 7 HOH B 12 612 147 HOH HOH . 
H 7 HOH B 13 613 5 HOH HOH . 
H 7 HOH B 14 614 50 HOH HOH . 
H 7 HOH B 15 615 183 HOH HOH . 
H 7 HOH B 16 616 93 HOH HOH . 
H 7 HOH B 17 617 106 HOH HOH . 
H 7 HOH B 18 618 214 HOH HOH . 
H 7 HOH B 19 619 7 HOH HOH . 
H 7 HOH B 20 620 156 HOH HOH . 
H 7 HOH B 21 621 155 HOH HOH . 
H 7 HOH B 22 622 19 HOH HOH . 
H 7 HOH B 23 623 32 HOH HOH . 
H 7 HOH B 24 624 195 HOH HOH . 
H 7 HOH B 25 625 131 HOH HOH . 
H 7 HOH B 26 626 20 HOH HOH . 
H 7 HOH B 27 627 170 HOH HOH . 
H 7 HOH B 28 628 118 HOH HOH . 
H 7 HOH B 29 629 113 HOH HOH . 
H 7 HOH B 30 630 22 HOH HOH . 
H 7 HOH B 31 631 79 HOH HOH . 
H 7 HOH B 32 632 88 HOH HOH . 
H 7 HOH B 33 633 63 HOH HOH . 
H 7 HOH B 34 634 205 HOH HOH . 
H 7 HOH B 35 635 38 HOH HOH . 
H 7 HOH B 36 636 121 HOH HOH . 
H 7 HOH B 37 637 109 HOH HOH . 
H 7 HOH B 38 638 30 HOH HOH . 
H 7 HOH B 39 639 184 HOH HOH . 
H 7 HOH B 40 640 9 HOH HOH . 
H 7 HOH B 41 641 33 HOH HOH . 
H 7 HOH B 42 642 72 HOH HOH . 
H 7 HOH B 43 643 24 HOH HOH . 
H 7 HOH B 44 644 97 HOH HOH . 
H 7 HOH B 45 645 91 HOH HOH . 
H 7 HOH B 46 646 86 HOH HOH . 
H 7 HOH B 47 647 204 HOH HOH . 
H 7 HOH B 48 648 188 HOH HOH . 
H 7 HOH B 49 649 105 HOH HOH . 
H 7 HOH B 50 650 114 HOH HOH . 
H 7 HOH B 51 651 98 HOH HOH . 
H 7 HOH B 52 652 192 HOH HOH . 
H 7 HOH B 53 653 215 HOH HOH . 
H 7 HOH B 54 654 208 HOH HOH . 
H 7 HOH B 55 655 146 HOH HOH . 
H 7 HOH B 56 656 216 HOH HOH . 
H 7 HOH B 57 657 218 HOH HOH . 
H 7 HOH B 58 658 199 HOH HOH . 
H 7 HOH B 59 659 92 HOH HOH . 
H 7 HOH B 60 660 163 HOH HOH . 
H 7 HOH B 61 661 123 HOH HOH . 
H 7 HOH B 62 662 190 HOH HOH . 
H 7 HOH B 63 663 148 HOH HOH . 
H 7 HOH B 64 664 31 HOH HOH . 
H 7 HOH B 65 665 107 HOH HOH . 
H 7 HOH B 66 666 126 HOH HOH . 
H 7 HOH B 67 667 133 HOH HOH . 
I 7 HOH F 1 201 149 HOH HOH . 
I 7 HOH F 2 202 194 HOH HOH . 
I 7 HOH F 3 203 198 HOH HOH . 
I 7 HOH F 4 204 52 HOH HOH . 
I 7 HOH F 5 205 18 HOH HOH . 
I 7 HOH F 6 206 2 HOH HOH . 
I 7 HOH F 7 207 46 HOH HOH . 
I 7 HOH F 8 208 213 HOH HOH . 
I 7 HOH F 9 209 37 HOH HOH . 
I 7 HOH F 10 210 56 HOH HOH . 
I 7 HOH F 11 211 100 HOH HOH . 
I 7 HOH F 12 212 8 HOH HOH . 
I 7 HOH F 13 213 35 HOH HOH . 
I 7 HOH F 14 214 117 HOH HOH . 
I 7 HOH F 15 215 23 HOH HOH . 
I 7 HOH F 16 216 42 HOH HOH . 
I 7 HOH F 17 217 6 HOH HOH . 
I 7 HOH F 18 218 84 HOH HOH . 
I 7 HOH F 19 219 75 HOH HOH . 
I 7 HOH F 20 220 34 HOH HOH . 
I 7 HOH F 21 221 10 HOH HOH . 
I 7 HOH F 22 222 85 HOH HOH . 
I 7 HOH F 23 223 71 HOH HOH . 
I 7 HOH F 24 224 200 HOH HOH . 
I 7 HOH F 25 225 59 HOH HOH . 
I 7 HOH F 26 226 69 HOH HOH . 
I 7 HOH F 27 227 64 HOH HOH . 
I 7 HOH F 28 228 116 HOH HOH . 
I 7 HOH F 29 229 94 HOH HOH . 
I 7 HOH F 30 230 28 HOH HOH . 
I 7 HOH F 31 231 167 HOH HOH . 
I 7 HOH F 32 232 172 HOH HOH . 
I 7 HOH F 33 233 173 HOH HOH . 
I 7 HOH F 34 234 82 HOH HOH . 
I 7 HOH F 35 235 145 HOH HOH . 
I 7 HOH F 36 236 185 HOH HOH . 
I 7 HOH F 37 237 168 HOH HOH . 
I 7 HOH F 38 238 61 HOH HOH . 
I 7 HOH F 39 239 152 HOH HOH . 
I 7 HOH F 40 240 217 HOH HOH . 
I 7 HOH F 41 241 174 HOH HOH . 
I 7 HOH F 42 242 169 HOH HOH . 
I 7 HOH F 43 243 171 HOH HOH . 
I 7 HOH F 44 244 21 HOH HOH . 
I 7 HOH F 45 245 81 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               0.209 
_atom_site.Cartn_y               -13.796 
_atom_site.Cartn_z               17.872 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.46 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#