data_7YZ5
#
_model_server_result.job_id            uvgGjcm6iGV9R5TH1ZJCyw 
_model_server_result.datetime_utc      '2025-06-18 12:44:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    7YZ5 
#
_exptl.entry_id    7YZ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.82 
_cell.angle_gamma         90 
_cell.entry_id            7YZ5 
_cell.length_a            74.28 
_cell.length_b            91.87 
_cell.length_c            83.69 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc7 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc8 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc9 E MG MG . A MG 502 1_555 H O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc10 E MG MG . A MG 502 1_555 H O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc11 E MG MG . A MG 502 1_555 H O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc12 E MG MG . A MG 502 1_555 H O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc13 F CA CA . A CA 503 1_555 H O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7YZ5 
_atom_sites.fract_transf_matrix[1][1]    0.013463 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00161 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 501 501 GTP GTP . 
E 5 MG A 1 502 502 MG MG . 
F 6 CA A 1 503 1 CA CA . 
G 7 GDP B 1 501 501 GDP GDP . 
H 8 HOH A 1 601 124 HOH HOH . 
H 8 HOH A 2 602 26 HOH HOH . 
H 8 HOH A 3 603 14 HOH HOH . 
H 8 HOH A 4 604 153 HOH HOH . 
H 8 HOH A 5 605 123 HOH HOH . 
H 8 HOH A 6 606 34 HOH HOH . 
H 8 HOH A 7 607 150 HOH HOH . 
H 8 HOH A 8 608 27 HOH HOH . 
H 8 HOH A 9 609 87 HOH HOH . 
H 8 HOH A 10 610 136 HOH HOH . 
H 8 HOH A 11 611 78 HOH HOH . 
H 8 HOH A 12 612 24 HOH HOH . 
H 8 HOH A 13 613 12 HOH HOH . 
H 8 HOH A 14 614 104 HOH HOH . 
H 8 HOH A 15 615 17 HOH HOH . 
H 8 HOH A 16 616 65 HOH HOH . 
H 8 HOH A 17 617 19 HOH HOH . 
H 8 HOH A 18 618 33 HOH HOH . 
H 8 HOH A 19 619 118 HOH HOH . 
H 8 HOH A 20 620 66 HOH HOH . 
H 8 HOH A 21 621 2 HOH HOH . 
H 8 HOH A 22 622 5 HOH HOH . 
H 8 HOH A 23 623 43 HOH HOH . 
H 8 HOH A 24 624 133 HOH HOH . 
H 8 HOH A 25 625 72 HOH HOH . 
H 8 HOH A 26 626 121 HOH HOH . 
H 8 HOH A 27 627 7 HOH HOH . 
H 8 HOH A 28 628 47 HOH HOH . 
H 8 HOH A 29 629 13 HOH HOH . 
H 8 HOH A 30 630 1 HOH HOH . 
H 8 HOH A 31 631 70 HOH HOH . 
H 8 HOH A 32 632 35 HOH HOH . 
H 8 HOH A 33 633 61 HOH HOH . 
H 8 HOH A 34 634 101 HOH HOH . 
H 8 HOH A 35 635 3 HOH HOH . 
H 8 HOH A 36 636 157 HOH HOH . 
H 8 HOH A 37 637 15 HOH HOH . 
H 8 HOH A 38 638 132 HOH HOH . 
H 8 HOH A 39 639 91 HOH HOH . 
H 8 HOH A 40 640 96 HOH HOH . 
H 8 HOH A 41 641 4 HOH HOH . 
H 8 HOH A 42 642 90 HOH HOH . 
H 8 HOH A 43 643 81 HOH HOH . 
H 8 HOH A 44 644 50 HOH HOH . 
H 8 HOH A 45 645 114 HOH HOH . 
H 8 HOH A 46 646 117 HOH HOH . 
H 8 HOH A 47 647 159 HOH HOH . 
H 8 HOH A 48 648 20 HOH HOH . 
H 8 HOH A 49 649 38 HOH HOH . 
H 8 HOH A 50 650 31 HOH HOH . 
H 8 HOH A 51 651 16 HOH HOH . 
H 8 HOH A 52 652 93 HOH HOH . 
H 8 HOH A 53 653 88 HOH HOH . 
H 8 HOH A 54 654 40 HOH HOH . 
H 8 HOH A 55 655 149 HOH HOH . 
H 8 HOH A 56 656 97 HOH HOH . 
H 8 HOH A 57 657 145 HOH HOH . 
H 8 HOH A 58 658 53 HOH HOH . 
H 8 HOH A 59 659 119 HOH HOH . 
H 8 HOH A 60 660 37 HOH HOH . 
H 8 HOH A 61 661 144 HOH HOH . 
H 8 HOH A 62 662 95 HOH HOH . 
H 8 HOH A 63 663 60 HOH HOH . 
H 8 HOH A 64 664 107 HOH HOH . 
H 8 HOH A 65 665 67 HOH HOH . 
H 8 HOH A 66 666 151 HOH HOH . 
H 8 HOH A 67 667 51 HOH HOH . 
H 8 HOH A 68 668 100 HOH HOH . 
H 8 HOH A 69 669 127 HOH HOH . 
H 8 HOH A 70 670 57 HOH HOH . 
H 8 HOH A 71 671 147 HOH HOH . 
H 8 HOH A 72 672 62 HOH HOH . 
H 8 HOH A 73 673 141 HOH HOH . 
H 8 HOH A 74 674 74 HOH HOH . 
H 8 HOH A 75 675 126 HOH HOH . 
H 8 HOH A 76 676 109 HOH HOH . 
I 8 HOH B 1 601 120 HOH HOH . 
I 8 HOH B 2 602 155 HOH HOH . 
I 8 HOH B 3 603 130 HOH HOH . 
I 8 HOH B 4 604 92 HOH HOH . 
I 8 HOH B 5 605 139 HOH HOH . 
I 8 HOH B 6 606 85 HOH HOH . 
I 8 HOH B 7 607 69 HOH HOH . 
I 8 HOH B 8 608 75 HOH HOH . 
I 8 HOH B 9 609 21 HOH HOH . 
I 8 HOH B 10 610 148 HOH HOH . 
I 8 HOH B 11 611 10 HOH HOH . 
I 8 HOH B 12 612 22 HOH HOH . 
I 8 HOH B 13 613 138 HOH HOH . 
I 8 HOH B 14 614 112 HOH HOH . 
I 8 HOH B 15 615 154 HOH HOH . 
I 8 HOH B 16 616 49 HOH HOH . 
I 8 HOH B 17 617 8 HOH HOH . 
I 8 HOH B 18 618 102 HOH HOH . 
I 8 HOH B 19 619 113 HOH HOH . 
I 8 HOH B 20 620 48 HOH HOH . 
I 8 HOH B 21 621 83 HOH HOH . 
I 8 HOH B 22 622 9 HOH HOH . 
I 8 HOH B 23 623 86 HOH HOH . 
I 8 HOH B 24 624 39 HOH HOH . 
I 8 HOH B 25 625 89 HOH HOH . 
I 8 HOH B 26 626 105 HOH HOH . 
I 8 HOH B 27 627 68 HOH HOH . 
I 8 HOH B 28 628 142 HOH HOH . 
I 8 HOH B 29 629 84 HOH HOH . 
I 8 HOH B 30 630 98 HOH HOH . 
I 8 HOH B 31 631 11 HOH HOH . 
I 8 HOH B 32 632 110 HOH HOH . 
I 8 HOH B 33 633 18 HOH HOH . 
I 8 HOH B 34 634 71 HOH HOH . 
I 8 HOH B 35 635 46 HOH HOH . 
I 8 HOH B 36 636 36 HOH HOH . 
I 8 HOH B 37 637 122 HOH HOH . 
I 8 HOH B 38 638 99 HOH HOH . 
I 8 HOH B 39 639 106 HOH HOH . 
I 8 HOH B 40 640 108 HOH HOH . 
I 8 HOH B 41 641 63 HOH HOH . 
J 8 HOH F 1 201 28 HOH HOH . 
J 8 HOH F 2 202 77 HOH HOH . 
J 8 HOH F 3 203 79 HOH HOH . 
J 8 HOH F 4 204 41 HOH HOH . 
J 8 HOH F 5 205 55 HOH HOH . 
J 8 HOH F 6 206 103 HOH HOH . 
J 8 HOH F 7 207 58 HOH HOH . 
J 8 HOH F 8 208 125 HOH HOH . 
J 8 HOH F 9 209 56 HOH HOH . 
J 8 HOH F 10 210 32 HOH HOH . 
J 8 HOH F 11 211 23 HOH HOH . 
J 8 HOH F 12 212 6 HOH HOH . 
J 8 HOH F 13 213 29 HOH HOH . 
J 8 HOH F 14 214 82 HOH HOH . 
J 8 HOH F 15 215 52 HOH HOH . 
J 8 HOH F 16 216 44 HOH HOH . 
J 8 HOH F 17 217 94 HOH HOH . 
J 8 HOH F 18 218 73 HOH HOH . 
J 8 HOH F 19 219 129 HOH HOH . 
J 8 HOH F 20 220 45 HOH HOH . 
J 8 HOH F 21 221 59 HOH HOH . 
J 8 HOH F 22 222 30 HOH HOH . 
J 8 HOH F 23 223 25 HOH HOH . 
J 8 HOH F 24 224 54 HOH HOH . 
J 8 HOH F 25 225 111 HOH HOH . 
J 8 HOH F 26 226 64 HOH HOH . 
J 8 HOH F 27 227 143 HOH HOH . 
J 8 HOH F 28 228 128 HOH HOH . 
J 8 HOH F 29 229 42 HOH HOH . 
J 8 HOH F 30 230 116 HOH HOH . 
J 8 HOH F 31 231 140 HOH HOH . 
J 8 HOH F 32 232 152 HOH HOH . 
J 8 HOH F 33 233 146 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               0.513 
_atom_site.Cartn_y               -13.831 
_atom_site.Cartn_z               18.554 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.32 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#