data_7YZ6 # _model_server_result.job_id aRKOArE4sebzfyt4UNrvvQ _model_server_result.datetime_utc '2024-11-05 08:24:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 7YZ6 # _exptl.entry_id 7YZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.82 _cell.angle_gamma 90 _cell.entry_id 7YZ6 _cell.length_a 74.28 _cell.length_b 91.87 _cell.length_c 83.69 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc9 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc10 E MG MG . A MG 502 1_555 J O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc11 E MG MG . A MG 502 1_555 J O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc12 E MG MG . A MG 502 1_555 J O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc13 E MG MG . A MG 502 1_555 J O HOH . A HOH 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc14 H O1G GTP . B GTP 602 1_555 I MG MG . B MG 603 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.22 ? metalc ? metalc15 H O2B GTP . B GTP 602 1_555 I MG MG . B MG 603 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.94 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YZ6 _atom_sites.fract_transf_matrix[1][1] 0.013463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 CA A 1 503 1 CA CA . G 7 IBL B 1 601 601 IBL XXX . H 4 GTP B 1 602 701 GTP GTP . I 5 MG B 1 603 1 MG MG . J 8 HOH A 1 601 118 HOH HOH . J 8 HOH A 2 602 148 HOH HOH . J 8 HOH A 3 603 27 HOH HOH . J 8 HOH A 4 604 15 HOH HOH . J 8 HOH A 5 605 31 HOH HOH . J 8 HOH A 6 606 30 HOH HOH . J 8 HOH A 7 607 21 HOH HOH . J 8 HOH A 8 608 36 HOH HOH . J 8 HOH A 9 609 37 HOH HOH . J 8 HOH A 10 610 46 HOH HOH . J 8 HOH A 11 611 76 HOH HOH . J 8 HOH A 12 612 65 HOH HOH . J 8 HOH A 13 613 83 HOH HOH . J 8 HOH A 14 614 142 HOH HOH . J 8 HOH A 15 615 123 HOH HOH . J 8 HOH A 16 616 110 HOH HOH . J 8 HOH A 17 617 92 HOH HOH . J 8 HOH A 18 618 63 HOH HOH . J 8 HOH A 19 619 23 HOH HOH . J 8 HOH A 20 620 8 HOH HOH . J 8 HOH A 21 621 89 HOH HOH . J 8 HOH A 22 622 68 HOH HOH . J 8 HOH A 23 623 1 HOH HOH . J 8 HOH A 24 624 44 HOH HOH . J 8 HOH A 25 625 133 HOH HOH . J 8 HOH A 26 626 25 HOH HOH . J 8 HOH A 27 627 143 HOH HOH . J 8 HOH A 28 628 4 HOH HOH . J 8 HOH A 29 629 29 HOH HOH . J 8 HOH A 30 630 55 HOH HOH . J 8 HOH A 31 631 103 HOH HOH . J 8 HOH A 32 632 24 HOH HOH . J 8 HOH A 33 633 96 HOH HOH . J 8 HOH A 34 634 73 HOH HOH . J 8 HOH A 35 635 61 HOH HOH . J 8 HOH A 36 636 48 HOH HOH . J 8 HOH A 37 637 57 HOH HOH . J 8 HOH A 38 638 129 HOH HOH . J 8 HOH A 39 639 2 HOH HOH . J 8 HOH A 40 640 102 HOH HOH . J 8 HOH A 41 641 56 HOH HOH . J 8 HOH A 42 642 18 HOH HOH . J 8 HOH A 43 643 5 HOH HOH . J 8 HOH A 44 644 54 HOH HOH . J 8 HOH A 45 645 14 HOH HOH . J 8 HOH A 46 646 106 HOH HOH . J 8 HOH A 47 647 62 HOH HOH . J 8 HOH A 48 648 141 HOH HOH . J 8 HOH A 49 649 109 HOH HOH . J 8 HOH A 50 650 100 HOH HOH . J 8 HOH A 51 651 98 HOH HOH . J 8 HOH A 52 652 115 HOH HOH . J 8 HOH A 53 653 136 HOH HOH . J 8 HOH A 54 654 84 HOH HOH . J 8 HOH A 55 655 38 HOH HOH . J 8 HOH A 56 656 80 HOH HOH . J 8 HOH A 57 657 121 HOH HOH . J 8 HOH A 58 658 85 HOH HOH . J 8 HOH A 59 659 138 HOH HOH . J 8 HOH A 60 660 149 HOH HOH . J 8 HOH A 61 661 132 HOH HOH . J 8 HOH A 62 662 79 HOH HOH . J 8 HOH A 63 663 128 HOH HOH . J 8 HOH A 64 664 153 HOH HOH . J 8 HOH A 65 665 47 HOH HOH . J 8 HOH A 66 666 165 HOH HOH . J 8 HOH A 67 667 137 HOH HOH . J 8 HOH A 68 668 105 HOH HOH . J 8 HOH A 69 669 131 HOH HOH . J 8 HOH A 70 670 95 HOH HOH . J 8 HOH A 71 671 40 HOH HOH . J 8 HOH A 72 672 16 HOH HOH . J 8 HOH A 73 673 152 HOH HOH . J 8 HOH A 74 674 58 HOH HOH . J 8 HOH A 75 675 113 HOH HOH . J 8 HOH A 76 676 6 HOH HOH . J 8 HOH A 77 677 111 HOH HOH . J 8 HOH A 78 678 124 HOH HOH . J 8 HOH A 79 679 157 HOH HOH . J 8 HOH A 80 680 51 HOH HOH . J 8 HOH A 81 681 97 HOH HOH . J 8 HOH A 82 682 145 HOH HOH . J 8 HOH A 83 683 158 HOH HOH . J 8 HOH A 84 684 163 HOH HOH . J 8 HOH A 85 685 99 HOH HOH . J 8 HOH A 86 686 140 HOH HOH . K 8 HOH B 1 701 22 HOH HOH . K 8 HOH B 2 702 147 HOH HOH . K 8 HOH B 3 703 107 HOH HOH . K 8 HOH B 4 704 81 HOH HOH . K 8 HOH B 5 705 17 HOH HOH . K 8 HOH B 6 706 3 HOH HOH . K 8 HOH B 7 707 41 HOH HOH . K 8 HOH B 8 708 77 HOH HOH . K 8 HOH B 9 709 12 HOH HOH . K 8 HOH B 10 710 117 HOH HOH . K 8 HOH B 11 711 34 HOH HOH . K 8 HOH B 12 712 45 HOH HOH . K 8 HOH B 13 713 7 HOH HOH . K 8 HOH B 14 714 101 HOH HOH . K 8 HOH B 15 715 146 HOH HOH . K 8 HOH B 16 716 91 HOH HOH . K 8 HOH B 17 717 114 HOH HOH . K 8 HOH B 18 718 10 HOH HOH . K 8 HOH B 19 719 156 HOH HOH . K 8 HOH B 20 720 130 HOH HOH . K 8 HOH B 21 721 13 HOH HOH . K 8 HOH B 22 722 28 HOH HOH . K 8 HOH B 23 723 72 HOH HOH . K 8 HOH B 24 724 116 HOH HOH . K 8 HOH B 25 725 108 HOH HOH . K 8 HOH B 26 726 43 HOH HOH . K 8 HOH B 27 727 66 HOH HOH . K 8 HOH B 28 728 104 HOH HOH . K 8 HOH B 29 729 150 HOH HOH . K 8 HOH B 30 730 126 HOH HOH . K 8 HOH B 31 731 162 HOH HOH . K 8 HOH B 32 732 164 HOH HOH . L 8 HOH F 1 201 90 HOH HOH . L 8 HOH F 2 202 33 HOH HOH . L 8 HOH F 3 203 88 HOH HOH . L 8 HOH F 4 204 59 HOH HOH . L 8 HOH F 5 205 50 HOH HOH . L 8 HOH F 6 206 112 HOH HOH . L 8 HOH F 7 207 39 HOH HOH . L 8 HOH F 8 208 159 HOH HOH . L 8 HOH F 9 209 119 HOH HOH . L 8 HOH F 10 210 78 HOH HOH . L 8 HOH F 11 211 75 HOH HOH . L 8 HOH F 12 212 70 HOH HOH . L 8 HOH F 13 213 67 HOH HOH . L 8 HOH F 14 214 71 HOH HOH . L 8 HOH F 15 215 26 HOH HOH . L 8 HOH F 16 216 32 HOH HOH . L 8 HOH F 17 217 74 HOH HOH . L 8 HOH F 18 218 19 HOH HOH . L 8 HOH F 19 219 120 HOH HOH . L 8 HOH F 20 220 151 HOH HOH . L 8 HOH F 21 221 167 HOH HOH . L 8 HOH F 22 222 86 HOH HOH . L 8 HOH F 23 223 52 HOH HOH . L 8 HOH F 24 224 94 HOH HOH . L 8 HOH F 25 225 64 HOH HOH . L 8 HOH F 26 226 161 HOH HOH . L 8 HOH F 27 227 49 HOH HOH . L 8 HOH F 28 228 9 HOH HOH . L 8 HOH F 29 229 35 HOH HOH . L 8 HOH F 30 230 125 HOH HOH . L 8 HOH F 31 231 135 HOH HOH . L 8 HOH F 32 232 139 HOH HOH . L 8 HOH F 33 233 53 HOH HOH . L 8 HOH F 34 234 20 HOH HOH . L 8 HOH F 35 235 11 HOH HOH . L 8 HOH F 36 236 42 HOH HOH . L 8 HOH F 37 237 60 HOH HOH . L 8 HOH F 38 238 154 HOH HOH . L 8 HOH F 39 239 93 HOH HOH . L 8 HOH F 40 240 82 HOH HOH . L 8 HOH F 41 241 166 HOH HOH . L 8 HOH F 42 242 87 HOH HOH . L 8 HOH F 43 243 69 HOH HOH . L 8 HOH F 44 244 160 HOH HOH . L 8 HOH F 45 245 144 HOH HOH . L 8 HOH F 46 246 155 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x -31.801 _atom_site.Cartn_y -14.358 _atom_site.Cartn_z 34.108 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.65 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #