data_7YZ9 # _model_server_result.job_id K4zzBJD-2LOmDH9YyQmaGw _model_server_result.datetime_utc '2024-10-27 04:27:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 7YZ9 # _exptl.entry_id 7YZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YZ9 _cell.length_a 94.793 _cell.length_b 94.793 _cell.length_c 119.655 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 24 B CYS 27 1_555 B SG CYS 97 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OD1 ASP 81 A ASP 60 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc2 A OD2 ASP 81 A ASP 60 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A O ILE 82 A ILE 61 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 A OD1 ASP 125 A ASP 104 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc5 C MN MN . A MN 301 1_555 H O2B ONM . A ONM 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 C MN MN . A MN 301 1_555 H O3G ONM . A ONM 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc7 C MN MN . A MN 301 1_555 H O2A ONM . A ONM 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc8 E MN MN . A MN 303 1_555 H O2A ONM . A ONM 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc9 E MN MN . A MN 303 1_555 I O HOH . A HOH 506 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7YZ9 _atom_sites.fract_transf_matrix[1][1] 0.010549 _atom_sites.fract_transf_matrix[1][2] 0.006091 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 301 6 MN MN . D 3 MN A 1 302 7 MN MN . E 3 MN A 1 303 8 MN MN . F 4 GOL A 1 304 401 GOL GOL . G 4 GOL A 1 305 601 GOL GOL . H 5 ONM A 1 306 801 ONM ONM . I 6 HOH A 1 401 1 HOH HOH . I 6 HOH A 2 402 267 HOH HOH . I 6 HOH A 3 403 47 HOH HOH . I 6 HOH A 4 404 296 HOH HOH . I 6 HOH A 5 405 22 HOH HOH . I 6 HOH A 6 406 4 HOH HOH . I 6 HOH A 7 407 228 HOH HOH . I 6 HOH A 8 408 74 HOH HOH . I 6 HOH A 9 409 44 HOH HOH . I 6 HOH A 10 410 43 HOH HOH . I 6 HOH A 11 411 104 HOH HOH . I 6 HOH A 12 412 145 HOH HOH . I 6 HOH A 13 413 62 HOH HOH . I 6 HOH A 14 414 23 HOH HOH . I 6 HOH A 15 415 124 HOH HOH . I 6 HOH A 16 416 8 HOH HOH . I 6 HOH A 17 417 214 HOH HOH . I 6 HOH A 18 418 123 HOH HOH . I 6 HOH A 19 419 95 HOH HOH . I 6 HOH A 20 420 3 HOH HOH . I 6 HOH A 21 421 51 HOH HOH . I 6 HOH A 22 422 65 HOH HOH . I 6 HOH A 23 423 252 HOH HOH . I 6 HOH A 24 424 206 HOH HOH . I 6 HOH A 25 425 2 HOH HOH . I 6 HOH A 26 426 28 HOH HOH . I 6 HOH A 27 427 218 HOH HOH . I 6 HOH A 28 428 50 HOH HOH . I 6 HOH A 29 429 10 HOH HOH . I 6 HOH A 30 430 53 HOH HOH . I 6 HOH A 31 431 26 HOH HOH . I 6 HOH A 32 432 300 HOH HOH . I 6 HOH A 33 433 297 HOH HOH . I 6 HOH A 34 434 292 HOH HOH . I 6 HOH A 35 435 94 HOH HOH . I 6 HOH A 36 436 34 HOH HOH . I 6 HOH A 37 437 108 HOH HOH . I 6 HOH A 38 438 14 HOH HOH . I 6 HOH A 39 439 303 HOH HOH . I 6 HOH A 40 440 15 HOH HOH . I 6 HOH A 41 441 37 HOH HOH . I 6 HOH A 42 442 35 HOH HOH . I 6 HOH A 43 443 285 HOH HOH . I 6 HOH A 44 444 259 HOH HOH . I 6 HOH A 45 445 33 HOH HOH . I 6 HOH A 46 446 249 HOH HOH . I 6 HOH A 47 447 54 HOH HOH . I 6 HOH A 48 448 29 HOH HOH . I 6 HOH A 49 449 39 HOH HOH . I 6 HOH A 50 450 11 HOH HOH . I 6 HOH A 51 451 98 HOH HOH . I 6 HOH A 52 452 38 HOH HOH . I 6 HOH A 53 453 71 HOH HOH . I 6 HOH A 54 454 31 HOH HOH . I 6 HOH A 55 455 96 HOH HOH . I 6 HOH A 56 456 231 HOH HOH . I 6 HOH A 57 457 304 HOH HOH . I 6 HOH A 58 458 92 HOH HOH . I 6 HOH A 59 459 159 HOH HOH . I 6 HOH A 60 460 21 HOH HOH . I 6 HOH A 61 461 289 HOH HOH . I 6 HOH A 62 462 278 HOH HOH . I 6 HOH A 63 463 186 HOH HOH . I 6 HOH A 64 464 79 HOH HOH . I 6 HOH A 65 465 217 HOH HOH . I 6 HOH A 66 466 19 HOH HOH . I 6 HOH A 67 467 302 HOH HOH . I 6 HOH A 68 468 46 HOH HOH . I 6 HOH A 69 469 280 HOH HOH . I 6 HOH A 70 470 298 HOH HOH . I 6 HOH A 71 471 40 HOH HOH . I 6 HOH A 72 472 187 HOH HOH . I 6 HOH A 73 473 64 HOH HOH . I 6 HOH A 74 474 30 HOH HOH . I 6 HOH A 75 475 294 HOH HOH . I 6 HOH A 76 476 248 HOH HOH . I 6 HOH A 77 477 18 HOH HOH . I 6 HOH A 78 478 115 HOH HOH . I 6 HOH A 79 479 36 HOH HOH . I 6 HOH A 80 480 63 HOH HOH . I 6 HOH A 81 481 116 HOH HOH . I 6 HOH A 82 482 16 HOH HOH . I 6 HOH A 83 483 131 HOH HOH . I 6 HOH A 84 484 277 HOH HOH . I 6 HOH A 85 485 41 HOH HOH . I 6 HOH A 86 486 118 HOH HOH . I 6 HOH A 87 487 110 HOH HOH . I 6 HOH A 88 488 148 HOH HOH . I 6 HOH A 89 489 127 HOH HOH . I 6 HOH A 90 490 246 HOH HOH . I 6 HOH A 91 491 264 HOH HOH . I 6 HOH A 92 492 17 HOH HOH . I 6 HOH A 93 493 306 HOH HOH . I 6 HOH A 94 494 301 HOH HOH . I 6 HOH A 95 495 256 HOH HOH . I 6 HOH A 96 496 172 HOH HOH . I 6 HOH A 97 497 147 HOH HOH . I 6 HOH A 98 498 117 HOH HOH . I 6 HOH A 99 499 32 HOH HOH . I 6 HOH A 100 500 73 HOH HOH . I 6 HOH A 101 501 55 HOH HOH . I 6 HOH A 102 502 66 HOH HOH . I 6 HOH A 103 503 290 HOH HOH . I 6 HOH A 104 504 157 HOH HOH . I 6 HOH A 105 505 126 HOH HOH . I 6 HOH A 106 506 24 HOH HOH . I 6 HOH A 107 507 266 HOH HOH . I 6 HOH A 108 508 286 HOH HOH . I 6 HOH A 109 509 254 HOH HOH . I 6 HOH A 110 510 279 HOH HOH . I 6 HOH A 111 511 305 HOH HOH . I 6 HOH A 112 512 169 HOH HOH . I 6 HOH A 113 513 307 HOH HOH . I 6 HOH A 114 514 102 HOH HOH . I 6 HOH A 115 515 299 HOH HOH . I 6 HOH A 116 516 170 HOH HOH . I 6 HOH A 117 517 190 HOH HOH . I 6 HOH A 118 518 283 HOH HOH . I 6 HOH A 119 519 149 HOH HOH . I 6 HOH A 120 520 269 HOH HOH . I 6 HOH A 121 521 276 HOH HOH . I 6 HOH A 122 522 243 HOH HOH . I 6 HOH A 123 523 244 HOH HOH . J 6 HOH B 1 201 177 HOH HOH . J 6 HOH B 2 202 5 HOH HOH . J 6 HOH B 3 203 106 HOH HOH . J 6 HOH B 4 204 87 HOH HOH . J 6 HOH B 5 205 49 HOH HOH . J 6 HOH B 6 206 6 HOH HOH . J 6 HOH B 7 207 184 HOH HOH . J 6 HOH B 8 208 9 HOH HOH . J 6 HOH B 9 209 282 HOH HOH . J 6 HOH B 10 210 45 HOH HOH . J 6 HOH B 11 211 7 HOH HOH . J 6 HOH B 12 212 293 HOH HOH . J 6 HOH B 13 213 143 HOH HOH . J 6 HOH B 14 214 88 HOH HOH . J 6 HOH B 15 215 111 HOH HOH . J 6 HOH B 16 216 86 HOH HOH . J 6 HOH B 17 217 97 HOH HOH . J 6 HOH B 18 218 27 HOH HOH . J 6 HOH B 19 219 209 HOH HOH . J 6 HOH B 20 220 288 HOH HOH . J 6 HOH B 21 221 56 HOH HOH . J 6 HOH B 22 222 175 HOH HOH . J 6 HOH B 23 223 90 HOH HOH . J 6 HOH B 24 224 213 HOH HOH . J 6 HOH B 25 225 291 HOH HOH . J 6 HOH B 26 226 270 HOH HOH . J 6 HOH B 27 227 281 HOH HOH . J 6 HOH B 28 228 80 HOH HOH . J 6 HOH B 29 229 271 HOH HOH . J 6 HOH B 30 230 128 HOH HOH . J 6 HOH B 31 231 235 HOH HOH . J 6 HOH B 32 232 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 54.36 49.729 59.327 1 100.1 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . F 4 54.977 50.454 60.342 1 101.17 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . F 4 54.358 50.627 58.07 1 99.76 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . F 4 54.618 51.954 58.375 1 100.49 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . F 4 55.434 50.026 57.15 1 100.05 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . F 4 55.238 50.602 55.899 1 102.27 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #