data_7YZI
#
_model_server_result.job_id            FLPHzqc7w56Z_Z6szjL0Mw 
_model_server_result.datetime_utc      '2024-10-27 06:28:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yzi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    7YZI 
#
_exptl.entry_id    7YZI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              656.328 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YZI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 24 C CYS 27 1_555 C SG CYS 97 C CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 D SG CYS 24 D CYS 27 1_555 D SG CYS 97 D CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf3 E SG CYS 24 E CYS 27 1_555 E SG CYS 97 E CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc1 A OD2 ASP 282 A ASP 256 1_555 G MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc2 A OD1 ASP 282 A ASP 256 1_555 H MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc3 A O ILE 283 A ILE 257 1_555 G MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 A OD2 ASP 326 A ASP 300 1_555 G MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc5 A OD1 ASP 326 A ASP 300 1_555 H MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc6 A OD2 ASP 326 A ASP 300 1_555 H MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc7 F PB ONM . A ONM 501 1_555 G MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc8 F O1B ONM . A ONM 501 1_555 G MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc9 F O2G ONM . A ONM 501 1_555 G MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc10 F O3G ONM . A ONM 501 1_555 G MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc11 F O2A ONM . A ONM 501 1_555 H MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? 
metalc ? metalc12 B OD2 ASP 282 B ASP 256 1_555 J MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc13 B OD1 ASP 282 B ASP 256 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc14 B O ILE 283 B ILE 257 1_555 J MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc15 B OD2 ASP 326 B ASP 300 1_555 J MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc16 B OD1 ASP 326 B ASP 300 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc17 B OD2 ASP 326 B ASP 300 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc18 I PB ONM . B ONM 501 1_555 J MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc19 I O1B ONM . B ONM 501 1_555 J MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc20 I O2G ONM . B ONM 501 1_555 J MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc21 I O3G ONM . B ONM 501 1_555 J MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc22 I O2A ONM . B ONM 501 1_555 K MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
#
_chem_comp.formula           'C18 H23 N6 O15 P3' 
_chem_comp.formula_weight    656.328 
_chem_comp.id                ONM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7YZI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 ONM A 1 501 429 ONM ONM . 
G 4 MN A 1 502 431 MN MN . 
H 4 MN A 1 503 432 MN MN . 
I 3 ONM B 1 501 429 ONM ONM . 
J 4 MN B 1 502 431 MN MN . 
K 4 MN B 1 503 432 MN MN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA7 ONM . . . F 3 143.155 142.876 68.285 1 75.55 ? CA7 ONM 501 A 1 
HETATM 2 N NA1 ONM . . . F 3 141.951 142.089 68.655 1 75.55 ? NA1 ONM 501 A 1 
HETATM 3 C CA6 ONM . . . F 3 141.3 142.338 69.899 1 75.55 ? CA6 ONM 501 A 1 
HETATM 4 C CA5 ONM . . . F 3 141.915 143.13 70.846 1 75.55 ? CA5 ONM 501 A 1 
HETATM 5 C CA4 ONM . . . F 3 141.294 143.38 72.054 1 75.55 ? CA4 ONM 501 A 1 
HETATM 6 C CA3 ONM . . . F 3 140.049 142.836 72.316 1 75.55 ? CA3 ONM 501 A 1 
HETATM 7 C CA2 ONM . . . F 3 139.432 142.046 71.369 1 75.55 ? CA2 ONM 501 A 1 
HETATM 8 C CA1 ONM . . . F 3 140.051 141.793 70.162 1 75.55 ? CA1 ONM 501 A 1 
HETATM 9 C CA ONM . . . F 3 139.306 140.88 69.108 1 75.55 ? CA ONM 501 A 1 
HETATM 10 O OA ONM . . . F 3 139.825 140.608 68.068 1 75.55 ? OA ONM 501 A 1 
HETATM 11 O O3' ONM . . . F 3 137.998 140.398 69.44 1 75.55 ? O3' ONM 501 A 1 
HETATM 12 C C3' ONM . . . F 3 137.381 139.582 68.536 1 75.55 ? C3' ONM 501 A 1 
HETATM 13 C C2' ONM . . . F 3 137.5 138.159 68.973 1 75.55 ? C2' ONM 501 A 1 
HETATM 14 O O2' ONM . . . F 3 138.836 137.895 69.594 1 75.55 ? O2' ONM 501 A 1 
HETATM 15 C C4' ONM . . . F 3 135.812 139.843 68.563 1 75.55 ? C4' ONM 501 A 1 
HETATM 16 C C5' ONM . . . F 3 135.233 139.877 67.127 1 75.55 ? C5' ONM 501 A 1 
HETATM 17 O O5' ONM . . . F 3 135.401 138.623 66.511 1 75.55 ? O5' ONM 501 A 1 
HETATM 18 P PA ONM . . . F 3 134.081 137.935 65.831 1 75.55 ? PA ONM 501 A 1 
HETATM 19 O O3A ONM . . . F 3 134.376 136.484 65.538 1 75.55 ? O3A ONM 501 A 1 
HETATM 20 O O2A ONM . . . F 3 132.913 138.038 66.774 1 75.55 ? O2A ONM 501 A 1 
HETATM 21 O O1A ONM . . . F 3 133.708 138.723 64.411 1 75.55 ? O1A ONM 501 A 1 
HETATM 22 P PB ONM . . . F 3 133.638 140.36 64.234 1 75.55 ? PB ONM 501 A 1 
HETATM 23 O O3B ONM . . . F 3 132.876 140.975 65.38 1 75.55 ? O3B ONM 501 A 1 
HETATM 24 O O2B ONM . . . F 3 135.024 140.933 64.19 1 75.55 ? O2B ONM 501 A 1 
HETATM 25 O O1B ONM . . . F 3 132.845 140.701 62.834 1 75.55 ? O1B ONM 501 A 1 
HETATM 26 P PG ONM . . . F 3 131.36 140.053 62.514 0.45 75.55 ? PG ONM 501 A 1 
HETATM 27 O O2G ONM . . . F 3 130.313 141.138 62.576 1 75.55 ? O2G ONM 501 A 1 
HETATM 28 O O3G ONM . . . F 3 131.056 138.999 63.568 1 75.55 ? O3G ONM 501 A 1 
HETATM 29 O O1G ONM . . . F 3 131.364 139.413 61.141 1 75.55 ? O1G ONM 501 A 1 
HETATM 30 O O4' ONM . . . F 3 135.296 138.856 69.208 1 75.55 ? O4' ONM 501 A 1 
HETATM 31 C C1' ONM . . . F 3 136.535 138.08 69.885 1 75.55 ? C1' ONM 501 A 1 
HETATM 32 N N9 ONM . . . F 3 136.189 136.725 70.179 1 75.55 ? N9 ONM 501 A 1 
HETATM 33 C C8 ONM . . . F 3 135.514 135.9 69.36 1 75.55 ? C8 ONM 501 A 1 
HETATM 34 N N7 ONM . . . F 3 135.376 134.71 69.987 1 75.55 ? N7 ONM 501 A 1 
HETATM 35 C C5 ONM . . . F 3 135.957 134.808 71.177 1 75.55 ? C5 ONM 501 A 1 
HETATM 36 C C4 ONM . . . F 3 136.462 136.065 71.295 1 75.55 ? C4 ONM 501 A 1 
HETATM 37 N N3 ONM . . . F 3 137.182 136.493 72.534 1 75.55 ? N3 ONM 501 A 1 
HETATM 38 C C2 ONM . . . F 3 137.347 135.546 73.631 1 75.55 ? C2 ONM 501 A 1 
HETATM 39 N N2 ONM . . . F 3 138.046 135.951 74.84 1 75.55 ? N2 ONM 501 A 1 
HETATM 40 N N1 ONM . . . F 3 136.817 134.21 73.52 1 75.55 ? N1 ONM 501 A 1 
HETATM 41 C C6 ONM . . . F 3 136.128 133.809 72.332 1 75.55 ? C6 ONM 501 A 1 
HETATM 42 O O6 ONM . . . F 3 135.691 132.71 72.237 1 75.55 ? O6 ONM 501 A 1 
HETATM 43 H HA71 ONM . . . F 3 143.872 142.683 68.91 1 64.97 ? HA71 ONM 501 A 1 
HETATM 44 H HA72 ONM . . . F 3 143.436 142.641 67.387 1 64.97 ? HA72 ONM 501 A 1 
HETATM 45 H HA73 ONM . . . F 3 142.945 143.822 68.319 1 64.97 ? HA73 ONM 501 A 1 
HETATM 46 H HA1 ONM . . . F 3 141.646 141.488 68.121 1 64.97 ? HA1 ONM 501 A 1 
HETATM 47 H HA5 ONM . . . F 3 142.751 143.497 70.676 1 64.97 ? HA5 ONM 501 A 1 
HETATM 48 H HA4 ONM . . . F 3 141.712 143.913 72.689 1 64.97 ? HA4 ONM 501 A 1 
HETATM 49 H HA3 ONM . . . F 3 139.629 143.004 73.128 1 64.97 ? HA3 ONM 501 A 1 
HETATM 50 H HA2 ONM . . . F 3 138.597 141.679 71.543 1 64.97 ? HA2 ONM 501 A 1 
HETATM 51 H H3' ONM . . . F 3 137.732 139.7 67.643 1 64.97 ? H3' ONM 501 A 1 
HETATM 52 H H1 ONM . . . F 3 137.325 137.561 68.233 1 64.97 ? H1 ONM 501 A 1 
HETATM 53 H H2' ONM . . . F 3 138.863 137.089 69.862 1 64.97 ? H2' ONM 501 A 1 
HETATM 54 H H4' ONM . . . F 3 135.627 140.675 69.024 1 64.97 ? H4' ONM 501 A 1 
HETATM 55 H "H5'1" ONM . . . F 3 134.288 140.091 67.16 1 64.97 ? "H5'1" ONM 501 A 1 
HETATM 56 H "H5'2" ONM . . . F 3 135.697 140.552 66.61 1 64.97 ? "H5'2" ONM 501 A 1 
HETATM 57 H H1' ONM . . . F 3 136.814 138.538 70.692 1 64.97 ? H1' ONM 501 A 1 
HETATM 58 H H8 ONM . . . F 3 135.201 136.11 68.511 1 64.97 ? H8 ONM 501 A 1 
HETATM 59 H HN21 ONM . . . F 3 138.36 136.749 74.902 1 64.97 ? HN21 ONM 501 A 1 
HETATM 60 H HN22 ONM . . . F 3 138.144 135.395 75.488 1 64.97 ? HN22 ONM 501 A 1 
HETATM 61 H HN1 ONM . . . F 3 136.916 133.658 74.17 1 64.97 ? HN1 ONM 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           61 
#