data_7YZK # _model_server_result.job_id j1RCoCyS2lgOPpD9zpyNTQ _model_server_result.datetime_utc '2024-10-27 06:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7YZK # _exptl.entry_id 7YZK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 656.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YZK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 24 C CYS 27 1_555 C SG CYS 97 C CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 24 D CYS 27 1_555 D SG CYS 97 D CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD2 ASP 282 A ASP 256 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A OD1 ASP 282 A ASP 256 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A O ILE 283 A ILE 257 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A OD2 ASP 326 A ASP 300 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc5 A OD1 ASP 326 A ASP 300 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A OD2 ASP 326 A ASP 300 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 E O2G ONM . A ONM 501 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 E O2A ONM . A ONM 501 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc9 B OD2 ASP 282 B ASP 256 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 B OD1 ASP 282 B ASP 256 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc11 B O ILE 283 B ILE 257 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc12 B OD2 ASP 326 B ASP 300 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc13 B OD1 ASP 326 B ASP 300 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc14 B OD2 ASP 326 B ASP 300 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc15 H O2G ONM . B ONM 501 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc16 H O2A ONM . B ONM 501 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? # _chem_comp.formula 'C18 H23 N6 O15 P3' _chem_comp.formula_weight 656.328 _chem_comp.id ONM _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YZK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ONM A 1 501 429 ONM ONM . F 4 MN A 1 502 431 MN MN . G 4 MN A 1 503 432 MN MN . H 3 ONM B 1 501 429 ONM ONM . I 4 MN B 1 502 431 MN MN . J 4 MN B 1 503 432 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA7 ONM . . . E 3 143.996 143.293 71.813 1 38.94 ? CA7 ONM 501 A 1 HETATM 2 N NA1 ONM . . . E 3 142.817 142.478 72.206 1 38.94 ? NA1 ONM 501 A 1 HETATM 3 C CA6 ONM . . . E 3 142.179 142.703 73.464 1 38.94 ? CA6 ONM 501 A 1 HETATM 4 C CA5 ONM . . . E 3 142.794 143.481 74.423 1 38.94 ? CA5 ONM 501 A 1 HETATM 5 C CA4 ONM . . . E 3 142.177 143.699 75.64 1 38.94 ? CA4 ONM 501 A 1 HETATM 6 C CA3 ONM . . . E 3 140.938 143.138 75.9 1 38.94 ? CA3 ONM 501 A 1 HETATM 7 C CA2 ONM . . . E 3 140.321 142.36 74.941 1 38.94 ? CA2 ONM 501 A 1 HETATM 8 C CA1 ONM . . . E 3 140.937 142.141 73.723 1 38.94 ? CA1 ONM 501 A 1 HETATM 9 C CA ONM . . . E 3 140.213 141.246 72.638 1 38.94 ? CA ONM 501 A 1 HETATM 10 O OA ONM . . . E 3 140.793 140.914 71.649 1 38.94 ? OA ONM 501 A 1 HETATM 11 O O3' ONM . . . E 3 138.855 140.852 72.867 1 38.94 ? O3' ONM 501 A 1 HETATM 12 C C3' ONM . . . E 3 138.3 140.003 71.951 1 38.94 ? C3' ONM 501 A 1 HETATM 13 C C2' ONM . . . E 3 138.441 138.585 72.41 1 38.94 ? C2' ONM 501 A 1 HETATM 14 O O2' ONM . . . E 3 139.745 138.374 73.119 1 38.94 ? O2' ONM 501 A 1 HETATM 15 C C4' ONM . . . E 3 136.726 140.232 71.907 1 38.94 ? C4' ONM 501 A 1 HETATM 16 C C5' ONM . . . E 3 136.227 140.307 70.441 1 38.94 ? C5' ONM 501 A 1 HETATM 17 O O5' ONM . . . E 3 136.445 139.074 69.793 1 38.94 ? O5' ONM 501 A 1 HETATM 18 P PA ONM . . . E 3 135.156 138.33 69.107 1 38.94 ? PA ONM 501 A 1 HETATM 19 O O3A ONM . . . E 3 135.519 136.898 68.789 1 38.94 ? O3A ONM 501 A 1 HETATM 20 O O2A ONM . . . E 3 133.991 138.356 70.059 1 38.94 ? O2A ONM 501 A 1 HETATM 21 O O1A ONM . . . E 3 134.738 139.117 67.698 1 38.94 ? O1A ONM 501 A 1 HETATM 22 P PB ONM . . . E 3 134.727 140.754 67.497 1 38.94 ? PB ONM 501 A 1 HETATM 23 O O3B ONM . . . E 3 133.982 141.406 68.635 1 38.94 ? O3B ONM 501 A 1 HETATM 24 O O2B ONM . . . E 3 136.136 141.278 67.44 1 38.94 ? O2B ONM 501 A 1 HETATM 25 O O1B ONM . . . E 3 133.948 141.099 66.087 1 38.94 ? O1B ONM 501 A 1 HETATM 26 P PG ONM . . . E 3 132.446 140.501 65.742 0.45 38.94 ? PG ONM 501 A 1 HETATM 27 O O2G ONM . . . E 3 131.407 141.567 65.992 1 38.94 ? O2G ONM 501 A 1 HETATM 28 O O3G ONM . . . E 3 132.17 139.309 66.648 1 38.94 ? O3G ONM 501 A 1 HETATM 29 O O1G ONM . . . E 3 132.39 140.059 64.294 1 38.94 ? O1G ONM 501 A 1 HETATM 30 O O4' ONM . . . E 3 136.204 139.213 72.499 1 38.94 ? O4' ONM 501 A 1 HETATM 31 C C1' ONM . . . E 3 137.42 138.474 73.258 1 38.94 ? C1' ONM 501 A 1 HETATM 32 N N9 ONM . . . E 3 137.096 137.107 73.527 1 38.94 ? N9 ONM 501 A 1 HETATM 33 C C8 ONM . . . E 3 136.465 136.288 72.667 1 38.94 ? C8 ONM 501 A 1 HETATM 34 N N7 ONM . . . E 3 136.326 135.082 73.262 1 38.94 ? N7 ONM 501 A 1 HETATM 35 C C5 ONM . . . E 3 136.863 135.16 74.475 1 38.94 ? C5 ONM 501 A 1 HETATM 36 C C4 ONM . . . E 3 137.341 136.424 74.641 1 38.94 ? C4 ONM 501 A 1 HETATM 37 N N3 ONM . . . E 3 138.01 136.824 75.921 1 38.94 ? N3 ONM 501 A 1 HETATM 38 C C2 ONM . . . E 3 138.151 135.85 77.003 1 38.94 ? C2 ONM 501 A 1 HETATM 39 N N2 ONM . . . E 3 138.801 136.236 78.249 1 38.94 ? N2 ONM 501 A 1 HETATM 40 N N1 ONM . . . E 3 137.647 134.507 76.837 1 38.94 ? N1 ONM 501 A 1 HETATM 41 C C6 ONM . . . E 3 137.009 134.131 75.611 1 38.94 ? C6 ONM 501 A 1 HETATM 42 O O6 ONM . . . E 3 136.592 133.028 75.469 1 38.94 ? O6 ONM 501 A 1 HETATM 43 H HA71 ONM . . . E 3 144.726 143.121 72.427 1 36.48 ? HA71 ONM 501 A 1 HETATM 44 H HA72 ONM . . . E 3 144.268 143.055 70.913 1 36.48 ? HA72 ONM 501 A 1 HETATM 45 H HA73 ONM . . . E 3 143.763 144.234 71.842 1 36.48 ? HA73 ONM 501 A 1 HETATM 46 H HA1 ONM . . . E 3 142.52 141.871 71.676 1 36.48 ? HA1 ONM 501 A 1 HETATM 47 H HA5 ONM . . . E 3 143.626 143.859 74.253 1 36.48 ? HA5 ONM 501 A 1 HETATM 48 H HA4 ONM . . . E 3 142.593 144.223 76.285 1 36.48 ? HA4 ONM 501 A 1 HETATM 49 H HA3 ONM . . . E 3 140.523 143.285 76.719 1 36.48 ? HA3 ONM 501 A 1 HETATM 50 H HA2 ONM . . . E 3 139.489 141.982 75.114 1 36.48 ? HA2 ONM 501 A 1 HETATM 51 H H3' ONM . . . E 3 138.686 140.12 71.07 1 36.48 ? H3' ONM 501 A 1 HETATM 52 H H1 ONM . . . E 3 138.341 137.974 71.664 1 36.48 ? H1 ONM 501 A 1 HETATM 53 H H2' ONM . . . E 3 139.811 137.558 73.347 1 36.48 ? H2' ONM 501 A 1 HETATM 54 H H4' ONM . . . E 3 136.499 141.045 72.384 1 36.48 ? H4' ONM 501 A 1 HETATM 55 H "H5'1" ONM . . . E 3 135.279 140.51 70.43 1 36.48 ? "H5'1" ONM 501 A 1 HETATM 56 H "H5'2" ONM . . . E 3 136.71 141.004 69.972 1 36.48 ? "H5'2" ONM 501 A 1 HETATM 57 H H1' ONM . . . E 3 137.629 138.939 74.083 1 36.48 ? H1' ONM 501 A 1 HETATM 58 H H8 ONM . . . E 3 136.177 136.512 71.811 1 36.48 ? H8 ONM 501 A 1 HETATM 59 H HN21 ONM . . . E 3 139.1 137.036 78.346 1 36.48 ? HN21 ONM 501 A 1 HETATM 60 H HN22 ONM . . . E 3 138.884 135.664 78.886 1 36.48 ? HN22 ONM 501 A 1 HETATM 61 H HN1 ONM . . . E 3 137.732 133.937 77.472 1 36.48 ? HN1 ONM 501 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 61 #