data_7YZK # _model_server_result.job_id inJEzYq8MJgWJ14VRTCI5A _model_server_result.datetime_utc '2024-10-27 06:30:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 7YZK # _exptl.entry_id 7YZK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 656.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YZK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 24 C CYS 27 1_555 C SG CYS 97 C CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 24 D CYS 27 1_555 D SG CYS 97 D CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD2 ASP 282 A ASP 256 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A OD1 ASP 282 A ASP 256 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A O ILE 283 A ILE 257 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A OD2 ASP 326 A ASP 300 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc5 A OD1 ASP 326 A ASP 300 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A OD2 ASP 326 A ASP 300 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 E O2G ONM . A ONM 501 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 E O2A ONM . A ONM 501 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc9 B OD2 ASP 282 B ASP 256 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 B OD1 ASP 282 B ASP 256 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc11 B O ILE 283 B ILE 257 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc12 B OD2 ASP 326 B ASP 300 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc13 B OD1 ASP 326 B ASP 300 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc14 B OD2 ASP 326 B ASP 300 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc15 H O2G ONM . B ONM 501 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc16 H O2A ONM . B ONM 501 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? # _chem_comp.formula 'C18 H23 N6 O15 P3' _chem_comp.formula_weight 656.328 _chem_comp.id ONM _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YZK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ONM A 1 501 429 ONM ONM . F 4 MN A 1 502 431 MN MN . G 4 MN A 1 503 432 MN MN . H 3 ONM B 1 501 429 ONM ONM . I 4 MN B 1 502 431 MN MN . J 4 MN B 1 503 432 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA7 ONM . . . H 3 120.004 120.709 71.812 1 38.94 ? CA7 ONM 501 B 1 HETATM 2 N NA1 ONM . . . H 3 121.183 121.523 72.205 1 38.94 ? NA1 ONM 501 B 1 HETATM 3 C CA6 ONM . . . H 3 121.821 121.298 73.463 1 38.94 ? CA6 ONM 501 B 1 HETATM 4 C CA5 ONM . . . H 3 121.206 120.52 74.422 1 38.94 ? CA5 ONM 501 B 1 HETATM 5 C CA4 ONM . . . H 3 121.823 120.302 75.639 1 38.94 ? CA4 ONM 501 B 1 HETATM 6 C CA3 ONM . . . H 3 123.062 120.863 75.899 1 38.94 ? CA3 ONM 501 B 1 HETATM 7 C CA2 ONM . . . H 3 123.68 121.641 74.94 1 38.94 ? CA2 ONM 501 B 1 HETATM 8 C CA1 ONM . . . H 3 123.063 121.861 73.722 1 38.94 ? CA1 ONM 501 B 1 HETATM 9 C CA ONM . . . H 3 123.788 122.756 72.637 1 38.94 ? CA ONM 501 B 1 HETATM 10 O OA ONM . . . H 3 123.207 123.087 71.648 1 38.94 ? OA ONM 501 B 1 HETATM 11 O O3' ONM . . . H 3 125.145 123.15 72.866 1 38.94 ? O3' ONM 501 B 1 HETATM 12 C C3' ONM . . . H 3 125.7 123.998 71.95 1 38.94 ? C3' ONM 501 B 1 HETATM 13 C C2' ONM . . . H 3 125.559 125.416 72.409 1 38.94 ? C2' ONM 501 B 1 HETATM 14 O O2' ONM . . . H 3 124.256 125.628 73.118 1 38.94 ? O2' ONM 501 B 1 HETATM 15 C C4' ONM . . . H 3 127.274 123.769 71.906 1 38.94 ? C4' ONM 501 B 1 HETATM 16 C C5' ONM . . . H 3 127.773 123.694 70.44 1 38.94 ? C5' ONM 501 B 1 HETATM 17 O O5' ONM . . . H 3 127.556 124.927 69.792 1 38.94 ? O5' ONM 501 B 1 HETATM 18 P PA ONM . . . H 3 128.844 125.671 69.106 1 38.94 ? PA ONM 501 B 1 HETATM 19 O O3A ONM . . . H 3 128.481 127.103 68.788 1 38.94 ? O3A ONM 501 B 1 HETATM 20 O O2A ONM . . . H 3 130.01 125.645 70.058 1 38.94 ? O2A ONM 501 B 1 HETATM 21 O O1A ONM . . . H 3 129.262 124.884 67.697 1 38.94 ? O1A ONM 501 B 1 HETATM 22 P PB ONM . . . H 3 129.273 123.247 67.496 1 38.94 ? PB ONM 501 B 1 HETATM 23 O O3B ONM . . . H 3 130.018 122.595 68.634 1 38.94 ? O3B ONM 501 B 1 HETATM 24 O O2B ONM . . . H 3 127.864 122.723 67.439 1 38.94 ? O2B ONM 501 B 1 HETATM 25 O O1B ONM . . . H 3 130.052 122.901 66.086 1 38.94 ? O1B ONM 501 B 1 HETATM 26 P PG ONM . . . H 3 131.555 123.5 65.741 0.45 38.94 ? PG ONM 501 B 1 HETATM 27 O O2G ONM . . . H 3 132.594 122.434 65.991 1 38.94 ? O2G ONM 501 B 1 HETATM 28 O O3G ONM . . . H 3 131.83 124.692 66.647 1 38.94 ? O3G ONM 501 B 1 HETATM 29 O O1G ONM . . . H 3 131.611 123.941 64.293 1 38.94 ? O1G ONM 501 B 1 HETATM 30 O O4' ONM . . . H 3 127.797 124.788 72.498 1 38.94 ? O4' ONM 501 B 1 HETATM 31 C C1' ONM . . . H 3 126.581 125.527 73.257 1 38.94 ? C1' ONM 501 B 1 HETATM 32 N N9 ONM . . . H 3 126.905 126.894 73.526 1 38.94 ? N9 ONM 501 B 1 HETATM 33 C C8 ONM . . . H 3 127.536 127.713 72.666 1 38.94 ? C8 ONM 501 B 1 HETATM 34 N N7 ONM . . . H 3 127.674 128.919 73.261 1 38.94 ? N7 ONM 501 B 1 HETATM 35 C C5 ONM . . . H 3 127.138 128.841 74.474 1 38.94 ? C5 ONM 501 B 1 HETATM 36 C C4 ONM . . . H 3 126.659 127.577 74.64 1 38.94 ? C4 ONM 501 B 1 HETATM 37 N N3 ONM . . . H 3 125.991 127.177 75.92 1 38.94 ? N3 ONM 501 B 1 HETATM 38 C C2 ONM . . . H 3 125.85 128.151 77.002 1 38.94 ? C2 ONM 501 B 1 HETATM 39 N N2 ONM . . . H 3 125.2 127.765 78.248 1 38.94 ? N2 ONM 501 B 1 HETATM 40 N N1 ONM . . . H 3 126.354 129.494 76.836 1 38.94 ? N1 ONM 501 B 1 HETATM 41 C C6 ONM . . . H 3 126.992 129.87 75.61 1 38.94 ? C6 ONM 501 B 1 HETATM 42 O O6 ONM . . . H 3 127.409 130.973 75.468 1 38.94 ? O6 ONM 501 B 1 HETATM 43 H HA71 ONM . . . H 3 119.274 120.88 72.427 1 36.56 ? HA71 ONM 501 B 1 HETATM 44 H HA72 ONM . . . H 3 119.732 120.946 70.912 1 36.56 ? HA72 ONM 501 B 1 HETATM 45 H HA73 ONM . . . H 3 120.238 119.768 71.841 1 36.56 ? HA73 ONM 501 B 1 HETATM 46 H HA1 ONM . . . H 3 121.48 122.131 71.675 1 36.56 ? HA1 ONM 501 B 1 HETATM 47 H HA5 ONM . . . H 3 120.375 120.142 74.252 1 36.56 ? HA5 ONM 501 B 1 HETATM 48 H HA4 ONM . . . H 3 121.407 119.778 76.284 1 36.56 ? HA4 ONM 501 B 1 HETATM 49 H HA3 ONM . . . H 3 123.477 120.716 76.718 1 36.56 ? HA3 ONM 501 B 1 HETATM 50 H HA2 ONM . . . H 3 124.511 122.019 75.113 1 36.56 ? HA2 ONM 501 B 1 HETATM 51 H H3' ONM . . . H 3 125.315 123.881 71.069 1 36.56 ? H3' ONM 501 B 1 HETATM 52 H H1 ONM . . . H 3 125.659 126.027 71.664 1 36.56 ? H1 ONM 501 B 1 HETATM 53 H H2' ONM . . . H 3 124.19 126.443 73.347 1 36.56 ? H2' ONM 501 B 1 HETATM 54 H H4' ONM . . . H 3 127.502 122.956 72.383 1 36.56 ? H4' ONM 501 B 1 HETATM 55 H "H5'1" ONM . . . H 3 128.721 123.491 70.429 1 36.56 ? "H5'1" ONM 501 B 1 HETATM 56 H "H5'2" ONM . . . H 3 127.29 122.997 69.971 1 36.56 ? "H5'2" ONM 501 B 1 HETATM 57 H H1' ONM . . . H 3 126.371 125.062 74.082 1 36.56 ? H1' ONM 501 B 1 HETATM 58 H H8 ONM . . . H 3 127.823 127.489 71.811 1 36.56 ? H8 ONM 501 B 1 HETATM 59 H HN21 ONM . . . H 3 124.9 126.965 78.345 1 36.56 ? HN21 ONM 501 B 1 HETATM 60 H HN22 ONM . . . H 3 125.116 128.337 78.885 1 36.56 ? HN22 ONM 501 B 1 HETATM 61 H HN1 ONM . . . H 3 126.269 130.064 77.471 1 36.56 ? HN1 ONM 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 61 #