data_7Z02 # _model_server_result.job_id WGIfIFZ7hX_3eOXB1CudLg _model_server_result.datetime_utc '2024-11-05 04:37:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7Z02 # _exptl.entry_id 7Z02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.39 _cell.angle_gamma 90 _cell.entry_id 7Z02 _cell.length_a 73.683 _cell.length_b 91.615 _cell.length_c 83.11 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc3 D O1G GTP . A GTP 501 1_555 F MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 D O2B GTP . A GTP 501 1_555 F MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 7Z02 _atom_sites.fract_transf_matrix[1][1] 0.013572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001761 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 5 MG A 1 503 1 MG MG . G 6 GDP B 1 501 501 GDP GDP . H 7 I8N B 1 502 601 I8N 558 . I 8 HOH A 1 601 6 HOH HOH . I 8 HOH A 2 602 7 HOH HOH . I 8 HOH A 3 603 5 HOH HOH . J 8 HOH B 1 601 9 HOH HOH . J 8 HOH B 2 602 8 HOH HOH . J 8 HOH B 3 603 2 HOH HOH . J 8 HOH B 4 604 3 HOH HOH . J 8 HOH B 5 605 1 HOH HOH . J 8 HOH B 6 606 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 2.275 -12.613 18.013 1 35.49 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . D 4 1.69 -13.988 17.776 1 32 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . D 4 2.132 -11.772 16.766 1 33.73 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . D 4 3.733 -12.72 18.402 1 34.08 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . D 4 1.463 -11.912 19.213 1 32.27 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . D 4 0.926 -12.82 20.423 1 33.1 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . D 4 0.064 -11.969 21.324 1 31.08 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . D 4 0.162 -14.005 19.879 1 33.87 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . D 4 2.263 -13.282 21.201 1 33.61 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . D 4 2.238 -13.574 22.789 1 34.73 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . D 4 0.861 -13.31 23.349 1 32.47 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . D 4 2.71 -14.983 23.065 1 32.22 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . D 4 3.269 -12.527 23.439 1 31.33 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . D 4 4.501 -12.967 23.961 1 30.58 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . D 4 4.471 -12.861 25.477 1 31.27 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . D 4 3.282 -13.442 25.969 1 32.63 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . D 4 5.633 -13.601 26.112 1 32.56 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . D 4 6.325 -12.747 26.996 1 32.2 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . D 4 4.999 -14.742 26.876 1 33.3 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . D 4 5.679 -14.946 28.086 1 34.56 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . D 4 3.561 -14.285 27.072 1 32.76 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . D 4 2.597 -15.4 27.092 1 32.93 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . D 4 2.201 -16.159 26.02 1 33.12 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . D 4 1.29 -17.062 26.45 1 30.7 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . D 4 1.09 -16.881 27.773 1 32.79 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . D 4 0.273 -17.528 28.69 1 34.05 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . D 4 -0.446 -18.455 28.321 1 31.62 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . D 4 0.273 -17.124 30.011 1 32.69 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . D 4 1.087 -16.082 30.41 1 32.07 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . D 4 1.091 -15.689 31.682 1 32.76 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . D 4 1.896 -15.445 29.49 1 33.7 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . D 4 1.9 -15.837 28.192 1 33.19 ? C4 GTP 501 A 1 HETATM 33 H H4' GTP . . . D 4 4.527 -11.803 25.731 1 59.2 ? H4' GTP 501 A 1 HETATM 34 H H3' GTP . . . D 4 6.357 -13.949 25.375 1 65.52 ? H3' GTP 501 A 1 HETATM 35 H H2' GTP . . . D 4 5.045 -15.704 26.366 1 76.89 ? H2' GTP 501 A 1 HETATM 36 H HO2' GTP . . . D 4 5.057 -14.826 28.834 1 66.97 ? HO2' GTP 501 A 1 HETATM 37 H H1' GTP . . . D 4 3.473 -13.79 28.039 1 61.62 ? H1' GTP 501 A 1 HETATM 38 H H8 GTP . . . D 4 2.56 -16.053 24.997 1 74.36 ? H8 GTP 501 A 1 HETATM 39 H HN1 GTP . . . D 4 -0.337 -17.604 30.703 1 64.33 ? HN1 GTP 501 A 1 HETATM 40 H HN21 GTP . . . D 4 1.688 -14.922 31.975 1 77.84 ? HN21 GTP 501 A 1 HETATM 41 H HN22 GTP . . . D 4 0.496 -16.156 32.359 1 74.85 ? HN22 GTP 501 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #