data_7Z09
#
_model_server_result.job_id            GZWyIeRltvHwpz2MVFP59w 
_model_server_result.datetime_utc      '2024-11-26 22:02:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z09 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":809}' 
#
_entry.id    7Z09 
#
_exptl.entry_id    7Z09 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7Z09 
_cell.length_a            60.73 
_cell.length_b            60.73 
_cell.length_c            110.27 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z09 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Z N N 
? 2 BA N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 215 A ALA 215 1_555 A N LYR 216 A LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C LYR 216 A LYR 216 1_555 A N VAL 217 A VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 160 n n 
C1 H11 LFA sing 161 n n 
C1 H12 LFA sing 162 n n 
C1 H13 LFA sing 163 n n 
C2 C3 LFA sing 164 n n 
C2 H21 LFA sing 165 n n 
C2 H22 LFA sing 166 n n 
C3 C4 LFA sing 167 n n 
C3 H31 LFA sing 168 n n 
C3 H32 LFA sing 169 n n 
C4 C5 LFA sing 170 n n 
C4 H41 LFA sing 171 n n 
C4 H42 LFA sing 172 n n 
C5 C6 LFA sing 173 n n 
C5 H51 LFA sing 174 n n 
C5 H52 LFA sing 175 n n 
C6 C7 LFA sing 176 n n 
C6 H61 LFA sing 177 n n 
C6 H62 LFA sing 178 n n 
C7 C8 LFA sing 179 n n 
C7 H71 LFA sing 180 n n 
C7 H72 LFA sing 181 n n 
C8 C9 LFA sing 182 n n 
C8 H81 LFA sing 183 n n 
C8 H82 LFA sing 184 n n 
C9 C10 LFA sing 185 n n 
C9 H91 LFA sing 186 n n 
C9 H92 LFA sing 187 n n 
C10 C11 LFA sing 188 n n 
C10 H101 LFA sing 189 n n 
C10 H102 LFA sing 190 n n 
C11 C12 LFA sing 191 n n 
C11 H111 LFA sing 192 n n 
C11 H112 LFA sing 193 n n 
C12 C13 LFA sing 194 n n 
C12 H121 LFA sing 195 n n 
C12 H122 LFA sing 196 n n 
C13 C14 LFA sing 197 n n 
C13 H131 LFA sing 198 n n 
C13 H132 LFA sing 199 n n 
C14 C15 LFA sing 200 n n 
C14 H141 LFA sing 201 n n 
C14 H142 LFA sing 202 n n 
C15 C16 LFA sing 203 n n 
C15 H151 LFA sing 204 n n 
C15 H152 LFA sing 205 n n 
C16 C17 LFA sing 206 n n 
C16 H161 LFA sing 207 n n 
C16 H162 LFA sing 208 n n 
C17 C18 LFA sing 209 n n 
C17 H171 LFA sing 210 n n 
C17 H172 LFA sing 211 n n 
C18 C19 LFA sing 212 n n 
C18 H181 LFA sing 213 n n 
C18 H182 LFA sing 214 n n 
C19 C20 LFA sing 215 n n 
C19 H191 LFA sing 216 n n 
C19 H192 LFA sing 217 n n 
C20 H201 LFA sing 218 n n 
C20 H202 LFA sing 219 n n 
C20 H203 LFA sing 220 n n 
#
_atom_sites.entry_id                     7Z09 
_atom_sites.fract_transf_matrix[1][1]    0.016466 
_atom_sites.fract_transf_matrix[1][2]    0.009507 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009069 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LFA A 1 801 801 LFA LFA . 
C 2 LFA A 1 802 1001 LFA LFA . 
D 3 OLC A 1 803 1101 OLC OLC . 
E 2 LFA A 1 804 1201 LFA LFA . 
F 2 LFA A 1 805 1301 LFA LFA . 
G 2 LFA A 1 806 1401 LFA LFA . 
H 2 LFA A 1 807 1501 LFA LFA . 
I 2 LFA A 1 808 1601 LFA LFA . 
J 2 LFA A 1 809 1701 LFA LFA . 
K 2 LFA A 1 810 1801 LFA LFA . 
L 3 OLC A 1 811 1901 OLC OLC . 
M 2 LFA A 1 812 2101 LFA LFA . 
N 2 LFA A 1 813 2301 LFA LFA . 
O 2 LFA A 1 814 2401 LFA LFA . 
P 2 LFA A 1 815 2601 LFA LFA . 
Q 2 LFA A 1 816 2701 LFA LFA . 
R 2 LFA A 1 817 2801 LFA LFA . 
S 2 LFA A 1 818 3001 LFA LFA . 
T 2 LFA A 1 819 3101 LFA LFA . 
U 2 LFA A 1 820 3201 LFA LFA . 
V 2 LFA A 1 821 3301 LFA LFA . 
W 2 LFA A 1 822 3401 LFA LFA . 
X 2 LFA A 1 823 3501 LFA LFA . 
Y 3 OLC A 1 824 3601 OLC OLC . 
Z 2 LFA A 1 825 3701 LFA LFA . 
AA 4 OLA A 1 826 3801 OLA OLA . 
BA 2 LFA A 1 827 3901 LFA LFA . 
CA 2 LFA A 1 828 4001 LFA LFA . 
DA 5 HOH A 1 901 50 HOH HOH . 
DA 5 HOH A 2 902 72 HOH HOH . 
DA 5 HOH A 3 903 54 HOH HOH . 
DA 5 HOH A 4 904 44 HOH HOH . 
DA 5 HOH A 5 905 408 HOH HOH . 
DA 5 HOH A 6 906 51 HOH HOH . 
DA 5 HOH A 7 907 404 HOH HOH . 
DA 5 HOH A 8 908 59 HOH HOH . 
DA 5 HOH A 9 909 34 HOH HOH . 
DA 5 HOH A 10 910 83 HOH HOH . 
DA 5 HOH A 11 911 503 HOH HOH . 
DA 5 HOH A 12 912 402 HOH HOH . 
DA 5 HOH A 13 913 60 HOH HOH . 
DA 5 HOH A 14 914 47 HOH HOH . 
DA 5 HOH A 15 915 55 HOH HOH . 
DA 5 HOH A 16 916 49 HOH HOH . 
DA 5 HOH A 17 917 406 HOH HOH . 
DA 5 HOH A 18 918 65 HOH HOH . 
DA 5 HOH A 19 919 403 HOH HOH . 
DA 5 HOH A 20 920 37 HOH HOH . 
DA 5 HOH A 21 921 401 HOH HOH . 
DA 5 HOH A 22 922 32 HOH HOH . 
DA 5 HOH A 23 923 12 HOH HOH . 
DA 5 HOH A 24 924 405 HOH HOH . 
DA 5 HOH A 25 925 43 HOH HOH . 
DA 5 HOH A 26 926 29 HOH HOH . 
DA 5 HOH A 27 927 38 HOH HOH . 
DA 5 HOH A 28 928 21 HOH HOH . 
DA 5 HOH A 29 929 71 HOH HOH . 
DA 5 HOH A 30 930 17 HOH HOH . 
DA 5 HOH A 31 931 64 HOH HOH . 
DA 5 HOH A 32 932 30 HOH HOH . 
DA 5 HOH A 33 933 35 HOH HOH . 
DA 5 HOH A 34 934 24 HOH HOH . 
DA 5 HOH A 35 935 58 HOH HOH . 
DA 5 HOH A 36 936 42 HOH HOH . 
DA 5 HOH A 37 937 13 HOH HOH . 
DA 5 HOH A 38 938 31 HOH HOH . 
DA 5 HOH A 39 939 502 HOH HOH . 
DA 5 HOH A 40 940 16 HOH HOH . 
DA 5 HOH A 41 941 407 HOH HOH . 
DA 5 HOH A 42 942 82 HOH HOH . 
DA 5 HOH A 43 943 52 HOH HOH . 
DA 5 HOH A 44 944 46 HOH HOH . 
DA 5 HOH A 45 945 23 HOH HOH . 
DA 5 HOH A 46 946 8 HOH HOH . 
DA 5 HOH A 47 947 511 HOH HOH . 
DA 5 HOH A 48 948 26 HOH HOH . 
DA 5 HOH A 49 949 70 HOH HOH . 
DA 5 HOH A 50 950 67 HOH HOH . 
DA 5 HOH A 51 951 501 HOH HOH . 
DA 5 HOH A 52 952 73 HOH HOH . 
DA 5 HOH A 53 953 56 HOH HOH . 
DA 5 HOH A 54 954 62 HOH HOH . 
DA 5 HOH A 55 955 78 HOH HOH . 
DA 5 HOH A 56 956 9 HOH HOH . 
DA 5 HOH A 57 957 61 HOH HOH . 
DA 5 HOH A 58 958 3 HOH HOH . 
DA 5 HOH A 59 959 11 HOH HOH . 
DA 5 HOH A 60 960 63 HOH HOH . 
DA 5 HOH A 61 961 66 HOH HOH . 
DA 5 HOH A 62 962 57 HOH HOH . 
DA 5 HOH A 63 963 53 HOH HOH . 
DA 5 HOH A 64 964 80 HOH HOH . 
DA 5 HOH A 65 965 74 HOH HOH . 
DA 5 HOH A 66 966 76 HOH HOH . 
DA 5 HOH A 67 967 77 HOH HOH . 
DA 5 HOH A 68 968 68 HOH HOH . 
DA 5 HOH A 69 969 18 HOH HOH . 
DA 5 HOH A 70 970 36 HOH HOH . 
DA 5 HOH A 71 971 69 HOH HOH . 
DA 5 HOH A 72 972 75 HOH HOH . 
DA 5 HOH A 73 973 20 HOH HOH . 
DA 5 HOH A 74 974 81 HOH HOH . 
DA 5 HOH A 75 975 33 HOH HOH . 
DA 5 HOH A 76 976 45 HOH HOH . 
DA 5 HOH A 77 977 41 HOH HOH . 
DA 5 HOH A 78 978 79 HOH HOH . 
DA 5 HOH A 79 979 2 HOH HOH . 
DA 5 HOH A 80 980 40 HOH HOH . 
DA 5 HOH A 81 981 19 HOH HOH . 
DA 5 HOH A 82 982 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . J 2 14.954 57.727 -11.975 1 38.68 ? C1 LFA 809 A 1 
HETATM 2 C C2 LFA . . . J 2 14.934 58.329 -10.561 1 38.47 ? C2 LFA 809 A 1 
HETATM 3 C C3 LFA . . . J 2 13.79 57.733 -9.741 1 36.94 ? C3 LFA 809 A 1 
HETATM 4 C C4 LFA . . . J 2 14.127 57.824 -8.245 1 34.32 ? C4 LFA 809 A 1 
HETATM 5 C C5 LFA . . . J 2 12.883 58.064 -7.396 1 31.85 ? C5 LFA 809 A 1 
HETATM 6 C C6 LFA . . . J 2 13.177 57.612 -5.962 1 30.17 ? C6 LFA 809 A 1 
HETATM 7 C C7 LFA . . . J 2 12.173 58.178 -4.968 1 28.89 ? C7 LFA 809 A 1 
HETATM 8 C C8 LFA . . . J 2 12.894 58.529 -3.66 1 30.57 ? C8 LFA 809 A 1 
HETATM 9 C C9 LFA . . . J 2 11.884 58.905 -2.572 1 33.04 ? C9 LFA 809 A 1 
HETATM 10 C C10 LFA . . . J 2 10.755 59.736 -3.17 1 37.08 ? C10 LFA 809 A 1 
HETATM 11 H H11 LFA . . . J 2 14.041 57.999 -12.497 1 46.11 ? H11 LFA 809 A 1 
HETATM 12 H H12 LFA . . . J 2 15.811 58.112 -12.52 1 46.11 ? H12 LFA 809 A 1 
HETATM 13 H H13 LFA . . . J 2 15.024 56.645 -11.907 1 46.11 ? H13 LFA 809 A 1 
HETATM 14 H H21 LFA . . . J 2 14.799 59.403 -10.63 1 45.86 ? H21 LFA 809 A 1 
HETATM 15 H H22 LFA . . . J 2 15.876 58.126 -10.063 1 45.86 ? H22 LFA 809 A 1 
HETATM 16 H H31 LFA . . . J 2 13.639 56.694 -10.015 1 44.04 ? H31 LFA 809 A 1 
HETATM 17 H H32 LFA . . . J 2 12.884 58.295 -9.942 1 44.04 ? H32 LFA 809 A 1 
HETATM 18 H H41 LFA . . . J 2 14.594 56.895 -7.936 1 40.89 ? H41 LFA 809 A 1 
HETATM 19 H H42 LFA . . . J 2 14.824 58.639 -8.083 1 40.89 ? H42 LFA 809 A 1 
HETATM 20 H H51 LFA . . . J 2 12.643 59.122 -7.41 1 37.92 ? H51 LFA 809 A 1 
HETATM 21 H H52 LFA . . . J 2 12.048 57.495 -7.792 1 37.92 ? H52 LFA 809 A 1 
HETATM 22 H H61 LFA . . . J 2 13.171 56.529 -5.91 1 35.91 ? H61 LFA 809 A 1 
HETATM 23 H H62 LFA . . . J 2 14.164 57.972 -5.69 1 35.91 ? H62 LFA 809 A 1 
HETATM 24 H H71 LFA . . . J 2 11.733 59.07 -5.401 1 34.37 ? H71 LFA 809 A 1 
HETATM 25 H H72 LFA . . . J 2 11.389 57.455 -4.774 1 34.37 ? H72 LFA 809 A 1 
HETATM 26 H H81 LFA . . . J 2 13.544 59.378 -3.842 1 36.39 ? H81 LFA 809 A 1 
HETATM 27 H H82 LFA . . . J 2 13.492 57.686 -3.329 1 36.39 ? H82 LFA 809 A 1 
HETATM 28 H H91 LFA . . . J 2 12.383 59.473 -1.794 1 39.35 ? H91 LFA 809 A 1 
HETATM 29 H H92 LFA . . . J 2 11.463 58.002 -2.145 1 39.35 ? H92 LFA 809 A 1 
HETATM 30 H H102 LFA . a . J 2 10.062 59.1 -3.712 0.5 44.2 ? H102 LFA 809 A 1 
HETATM 31 H H102 LFA . b . J 2 11.166 60.492 -3.83 0.5 44.2 ? H102 LFA 809 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#