data_7Z09 # _model_server_result.job_id Kc5dFaLO5hMwiw3N3z2MuQ _model_server_result.datetime_utc '2024-11-02 21:37:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":811}' # _entry.id 7Z09 # _exptl.entry_id 7Z09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z09 _cell.length_a 60.73 _cell.length_b 60.73 _cell.length_c 110.27 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 L N N ? 3 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 215 A ALA 215 1_555 A N LYR 216 A LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C LYR 216 A LYR 216 1_555 A N VAL 217 A VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 389 n n C10 C9 OLC doub 390 n n C10 C11 OLC sing 391 n n C9 C8 OLC sing 392 n n C17 C16 OLC sing 393 z n C11 C12 OLC sing 394 n n C8 C7 OLC sing 395 n n C24 C22 OLC sing 396 n n C24 O25 OLC sing 397 n n C16 C15 OLC sing 398 n n C12 C13 OLC sing 399 n n C7 C6 OLC sing 400 n n C15 C14 OLC sing 401 n n C13 C14 OLC sing 402 n n C6 C5 OLC sing 403 n n C5 C4 OLC sing 404 n n C4 C3 OLC sing 405 n n C3 C2 OLC sing 406 n n C2 C1 OLC sing 407 n n C21 C22 OLC sing 408 n n C21 O20 OLC sing 409 n n C1 O19 OLC doub 410 n n C1 O20 OLC sing 411 n n C22 O23 OLC sing 412 n n C18 H18 OLC sing 413 n n C18 H18A OLC sing 414 n n C18 H18B OLC sing 415 n n C10 H10 OLC sing 416 n n C9 H9 OLC sing 417 n n C17 H17 OLC sing 418 n n C17 H17A OLC sing 419 n n C11 H11 OLC sing 420 n n C11 H11A OLC sing 421 n n C8 H8 OLC sing 422 n n C8 H8A OLC sing 423 n n C24 H24 OLC sing 424 n n C24 H24A OLC sing 425 n n C16 H16 OLC sing 426 n n C16 H16A OLC sing 427 n n C12 H12 OLC sing 428 n n C12 H12A OLC sing 429 n n C7 H7 OLC sing 430 n n C7 H7A OLC sing 431 n n C15 H15 OLC sing 432 n n C15 H15A OLC sing 433 n n C13 H13 OLC sing 434 n n C13 H13A OLC sing 435 n n C6 H6 OLC sing 436 n n C6 H6A OLC sing 437 n n C14 H14 OLC sing 438 n n C14 H14A OLC sing 439 n n C5 H5 OLC sing 440 n n C5 H5A OLC sing 441 n n C4 H4 OLC sing 442 n n C4 H4A OLC sing 443 n n C3 H3 OLC sing 444 n n C3 H3A OLC sing 445 n n C2 H2 OLC sing 446 n n C2 H2A OLC sing 447 n n C21 H21 OLC sing 448 n n C21 H21A OLC sing 449 n n C22 H22 OLC sing 450 n n O25 HO25 OLC sing 451 n n O23 HO23 OLC sing 452 n n # _atom_sites.entry_id 7Z09 _atom_sites.fract_transf_matrix[1][1] 0.016466 _atom_sites.fract_transf_matrix[1][2] 0.009507 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 801 801 LFA LFA . C 2 LFA A 1 802 1001 LFA LFA . D 3 OLC A 1 803 1101 OLC OLC . E 2 LFA A 1 804 1201 LFA LFA . F 2 LFA A 1 805 1301 LFA LFA . G 2 LFA A 1 806 1401 LFA LFA . H 2 LFA A 1 807 1501 LFA LFA . I 2 LFA A 1 808 1601 LFA LFA . J 2 LFA A 1 809 1701 LFA LFA . K 2 LFA A 1 810 1801 LFA LFA . L 3 OLC A 1 811 1901 OLC OLC . M 2 LFA A 1 812 2101 LFA LFA . N 2 LFA A 1 813 2301 LFA LFA . O 2 LFA A 1 814 2401 LFA LFA . P 2 LFA A 1 815 2601 LFA LFA . Q 2 LFA A 1 816 2701 LFA LFA . R 2 LFA A 1 817 2801 LFA LFA . S 2 LFA A 1 818 3001 LFA LFA . T 2 LFA A 1 819 3101 LFA LFA . U 2 LFA A 1 820 3201 LFA LFA . V 2 LFA A 1 821 3301 LFA LFA . W 2 LFA A 1 822 3401 LFA LFA . X 2 LFA A 1 823 3501 LFA LFA . Y 3 OLC A 1 824 3601 OLC OLC . Z 2 LFA A 1 825 3701 LFA LFA . AA 4 OLA A 1 826 3801 OLA OLA . BA 2 LFA A 1 827 3901 LFA LFA . CA 2 LFA A 1 828 4001 LFA LFA . DA 5 HOH A 1 901 50 HOH HOH . DA 5 HOH A 2 902 72 HOH HOH . DA 5 HOH A 3 903 54 HOH HOH . DA 5 HOH A 4 904 44 HOH HOH . DA 5 HOH A 5 905 408 HOH HOH . DA 5 HOH A 6 906 51 HOH HOH . DA 5 HOH A 7 907 404 HOH HOH . DA 5 HOH A 8 908 59 HOH HOH . DA 5 HOH A 9 909 34 HOH HOH . DA 5 HOH A 10 910 83 HOH HOH . DA 5 HOH A 11 911 503 HOH HOH . DA 5 HOH A 12 912 402 HOH HOH . DA 5 HOH A 13 913 60 HOH HOH . DA 5 HOH A 14 914 47 HOH HOH . DA 5 HOH A 15 915 55 HOH HOH . DA 5 HOH A 16 916 49 HOH HOH . DA 5 HOH A 17 917 406 HOH HOH . DA 5 HOH A 18 918 65 HOH HOH . DA 5 HOH A 19 919 403 HOH HOH . DA 5 HOH A 20 920 37 HOH HOH . DA 5 HOH A 21 921 401 HOH HOH . DA 5 HOH A 22 922 32 HOH HOH . DA 5 HOH A 23 923 12 HOH HOH . DA 5 HOH A 24 924 405 HOH HOH . DA 5 HOH A 25 925 43 HOH HOH . DA 5 HOH A 26 926 29 HOH HOH . DA 5 HOH A 27 927 38 HOH HOH . DA 5 HOH A 28 928 21 HOH HOH . DA 5 HOH A 29 929 71 HOH HOH . DA 5 HOH A 30 930 17 HOH HOH . DA 5 HOH A 31 931 64 HOH HOH . DA 5 HOH A 32 932 30 HOH HOH . DA 5 HOH A 33 933 35 HOH HOH . DA 5 HOH A 34 934 24 HOH HOH . DA 5 HOH A 35 935 58 HOH HOH . DA 5 HOH A 36 936 42 HOH HOH . DA 5 HOH A 37 937 13 HOH HOH . DA 5 HOH A 38 938 31 HOH HOH . DA 5 HOH A 39 939 502 HOH HOH . DA 5 HOH A 40 940 16 HOH HOH . DA 5 HOH A 41 941 407 HOH HOH . DA 5 HOH A 42 942 82 HOH HOH . DA 5 HOH A 43 943 52 HOH HOH . DA 5 HOH A 44 944 46 HOH HOH . DA 5 HOH A 45 945 23 HOH HOH . DA 5 HOH A 46 946 8 HOH HOH . DA 5 HOH A 47 947 511 HOH HOH . DA 5 HOH A 48 948 26 HOH HOH . DA 5 HOH A 49 949 70 HOH HOH . DA 5 HOH A 50 950 67 HOH HOH . DA 5 HOH A 51 951 501 HOH HOH . DA 5 HOH A 52 952 73 HOH HOH . DA 5 HOH A 53 953 56 HOH HOH . DA 5 HOH A 54 954 62 HOH HOH . DA 5 HOH A 55 955 78 HOH HOH . DA 5 HOH A 56 956 9 HOH HOH . DA 5 HOH A 57 957 61 HOH HOH . DA 5 HOH A 58 958 3 HOH HOH . DA 5 HOH A 59 959 11 HOH HOH . DA 5 HOH A 60 960 63 HOH HOH . DA 5 HOH A 61 961 66 HOH HOH . DA 5 HOH A 62 962 57 HOH HOH . DA 5 HOH A 63 963 53 HOH HOH . DA 5 HOH A 64 964 80 HOH HOH . DA 5 HOH A 65 965 74 HOH HOH . DA 5 HOH A 66 966 76 HOH HOH . DA 5 HOH A 67 967 77 HOH HOH . DA 5 HOH A 68 968 68 HOH HOH . DA 5 HOH A 69 969 18 HOH HOH . DA 5 HOH A 70 970 36 HOH HOH . DA 5 HOH A 71 971 69 HOH HOH . DA 5 HOH A 72 972 75 HOH HOH . DA 5 HOH A 73 973 20 HOH HOH . DA 5 HOH A 74 974 81 HOH HOH . DA 5 HOH A 75 975 33 HOH HOH . DA 5 HOH A 76 976 45 HOH HOH . DA 5 HOH A 77 977 41 HOH HOH . DA 5 HOH A 78 978 79 HOH HOH . DA 5 HOH A 79 979 2 HOH HOH . DA 5 HOH A 80 980 40 HOH HOH . DA 5 HOH A 81 981 19 HOH HOH . DA 5 HOH A 82 982 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . L 3 28.188 29.806 8.285 1 41.43 ? C10 OLC 811 A 1 HETATM 2 C C9 OLC . . . L 3 28.121 28.56 8.701 1 42.99 ? C9 OLC 811 A 1 HETATM 3 C C11 OLC . . . L 3 28.565 30.911 9.272 1 37.72 ? C11 OLC 811 A 1 HETATM 4 C C8 OLC . . . L 3 27.744 27.435 7.734 1 42.31 ? C8 OLC 811 A 1 HETATM 5 C C24 OLC . . . L 3 29.38 21.893 17.724 1 59.85 ? C24 OLC 811 A 1 HETATM 6 C C12 OLC . . . L 3 28.64 32.247 8.537 1 34.32 ? C12 OLC 811 A 1 HETATM 7 C C7 OLC . . . L 3 28.114 26.096 8.367 1 43.36 ? C7 OLC 811 A 1 HETATM 8 C C13 OLC . . . L 3 29.774 33.075 9.127 1 33.47 ? C13 OLC 811 A 1 HETATM 9 C C6 OLC . . . L 3 26.866 25.311 8.752 1 42.83 ? C6 OLC 811 A 1 HETATM 10 C C5 OLC . . . L 3 26.826 25.07 10.274 1 43.35 ? C5 OLC 811 A 1 HETATM 11 C C4 OLC . . . L 3 28.201 24.708 10.829 1 44.49 ? C4 OLC 811 A 1 HETATM 12 C C3 OLC . . . L 3 28.269 24.974 12.345 1 47.24 ? C3 OLC 811 A 1 HETATM 13 C C2 OLC . . . L 3 29.253 24.015 13.012 1 51.65 ? C2 OLC 811 A 1 HETATM 14 C C21 OLC . . . L 3 30.385 23.911 16.602 1 63.61 ? C21 OLC 811 A 1 HETATM 15 C C1 OLC . . . L 3 29.588 24.468 14.446 1 56.76 ? C1 OLC 811 A 1 HETATM 16 C C22 OLC . . . L 3 29.905 23.309 17.931 1 63.63 ? C22 OLC 811 A 1 HETATM 17 O O19 OLC . . . L 3 29.878 25.595 14.651 1 55.63 ? O19 OLC 811 A 1 HETATM 18 O O25 OLC . . . L 3 28.231 21.712 18.511 1 56.5 ? O25 OLC 811 A 1 HETATM 19 O O23 OLC . . . L 3 30.95 23.291 18.864 1 66.24 ? O23 OLC 811 A 1 HETATM 20 O O20 OLC . . . L 3 29.556 23.562 15.523 1 61.38 ? O20 OLC 811 A 1 HETATM 21 H H10 OLC . . . L 3 27.969 30.224 7.304 1 49.42 ? H10 OLC 811 A 1 HETATM 22 H H11 OLC . . . L 3 27.818 30.974 10.061 1 44.96 ? H11 OLC 811 A 1 HETATM 23 H H11A OLC . . . L 3 29.531 30.684 9.719 1 44.96 ? H11A OLC 811 A 1 HETATM 24 H H8 OLC . a . L 3 28.317 27.522 6.804 0.5 50.47 ? H8 OLC 811 A 1 HETATM 25 H H8 OLC . b . L 3 26.679 27.484 7.501 0.5 50.47 ? H8 OLC 811 A 1 HETATM 26 H H8A OLC . . . L 3 27.864 28.649 7.652 1 51.29 ? H8A OLC 811 A 1 HETATM 27 H H24 OLC . . . L 3 30.142 21.18 18.035 1 71.53 ? H24 OLC 811 A 1 HETATM 28 H H24A OLC . . . L 3 29.13 21.715 16.681 1 71.53 ? H24A OLC 811 A 1 HETATM 29 H H12 OLC . . . L 3 27.702 32.782 8.664 1 40.89 ? H12 OLC 811 A 1 HETATM 30 H H12A OLC . . . L 3 28.831 32.094 7.474 1 40.89 ? H12A OLC 811 A 1 HETATM 31 H H7 OLC . . . L 3 28.707 26.435 9.198 1 51.74 ? H7 OLC 811 A 1 HETATM 32 H H7A OLC . . . L 3 28.729 25.511 7.68 1 51.74 ? H7A OLC 811 A 1 HETATM 33 H H13 OLC . . . L 3 30.682 32.471 9.192 1 39.86 ? H13 OLC 811 A 1 HETATM 34 H H13A OLC . . . L 3 29.493 33.423 10.119 1 39.86 ? H13A OLC 811 A 1 HETATM 35 H H6 OLC . . . L 3 25.97 25.852 8.469 1 51.1 ? H6 OLC 811 A 1 HETATM 36 H H6A OLC . . . L 3 26.874 24.348 8.236 1 51.1 ? H6A OLC 811 A 1 HETATM 37 H H5 OLC . . . L 3 26.135 24.251 10.477 1 51.73 ? H5 OLC 811 A 1 HETATM 38 H H5A OLC . . . L 3 26.469 25.968 10.77 1 51.73 ? H5A OLC 811 A 1 HETATM 39 H H4 OLC . . . L 3 29.071 25.173 10.398 1 53.1 ? H4 OLC 811 A 1 HETATM 40 H H4A OLC . . . L 3 28.318 23.633 10.691 1 53.1 ? H4A OLC 811 A 1 HETATM 41 H H3 OLC . . . L 3 28.579 26.001 12.524 1 56.39 ? H3 OLC 811 A 1 HETATM 42 H H3A OLC . . . L 3 27.28 24.819 12.777 1 56.39 ? H3A OLC 811 A 1 HETATM 43 H H2 OLC . . . L 3 28.761 23.045 13.072 1 61.68 ? H2 OLC 811 A 1 HETATM 44 H H2A OLC . . . L 3 30.165 23.915 12.425 1 61.68 ? H2A OLC 811 A 1 HETATM 45 H H21 OLC . . . L 3 30.459 24.989 16.709 1 76.04 ? H21 OLC 811 A 1 HETATM 46 H H21A OLC . . . L 3 31.37 23.497 16.404 1 76.04 ? H21A OLC 811 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 46 #