data_7Z09 # _model_server_result.job_id toh5lyjbShLLrjatdTjF-g _model_server_result.datetime_utc '2024-11-02 21:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":817}' # _entry.id 7Z09 # _exptl.entry_id 7Z09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z09 _cell.length_a 60.73 _cell.length_b 60.73 _cell.length_c 110.27 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Z N N ? 2 BA N N ? 2 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 215 A ALA 215 1_555 A N LYR 216 A LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C LYR 216 A LYR 216 1_555 A N VAL 217 A VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 160 n n C1 H11 LFA sing 161 n n C1 H12 LFA sing 162 n n C1 H13 LFA sing 163 n n C2 C3 LFA sing 164 n n C2 H21 LFA sing 165 n n C2 H22 LFA sing 166 n n C3 C4 LFA sing 167 n n C3 H31 LFA sing 168 n n C3 H32 LFA sing 169 n n C4 C5 LFA sing 170 n n C4 H41 LFA sing 171 n n C4 H42 LFA sing 172 n n C5 C6 LFA sing 173 n n C5 H51 LFA sing 174 n n C5 H52 LFA sing 175 n n C6 C7 LFA sing 176 n n C6 H61 LFA sing 177 n n C6 H62 LFA sing 178 n n C7 C8 LFA sing 179 n n C7 H71 LFA sing 180 n n C7 H72 LFA sing 181 n n C8 C9 LFA sing 182 n n C8 H81 LFA sing 183 n n C8 H82 LFA sing 184 n n C9 C10 LFA sing 185 n n C9 H91 LFA sing 186 n n C9 H92 LFA sing 187 n n C10 C11 LFA sing 188 n n C10 H101 LFA sing 189 n n C10 H102 LFA sing 190 n n C11 C12 LFA sing 191 n n C11 H111 LFA sing 192 n n C11 H112 LFA sing 193 n n C12 C13 LFA sing 194 n n C12 H121 LFA sing 195 n n C12 H122 LFA sing 196 n n C13 C14 LFA sing 197 n n C13 H131 LFA sing 198 n n C13 H132 LFA sing 199 n n C14 C15 LFA sing 200 n n C14 H141 LFA sing 201 n n C14 H142 LFA sing 202 n n C15 C16 LFA sing 203 n n C15 H151 LFA sing 204 n n C15 H152 LFA sing 205 n n C16 C17 LFA sing 206 n n C16 H161 LFA sing 207 n n C16 H162 LFA sing 208 n n C17 C18 LFA sing 209 n n C17 H171 LFA sing 210 n n C17 H172 LFA sing 211 n n C18 C19 LFA sing 212 n n C18 H181 LFA sing 213 n n C18 H182 LFA sing 214 n n C19 C20 LFA sing 215 n n C19 H191 LFA sing 216 n n C19 H192 LFA sing 217 n n C20 H201 LFA sing 218 n n C20 H202 LFA sing 219 n n C20 H203 LFA sing 220 n n # _atom_sites.entry_id 7Z09 _atom_sites.fract_transf_matrix[1][1] 0.016466 _atom_sites.fract_transf_matrix[1][2] 0.009507 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 801 801 LFA LFA . C 2 LFA A 1 802 1001 LFA LFA . D 3 OLC A 1 803 1101 OLC OLC . E 2 LFA A 1 804 1201 LFA LFA . F 2 LFA A 1 805 1301 LFA LFA . G 2 LFA A 1 806 1401 LFA LFA . H 2 LFA A 1 807 1501 LFA LFA . I 2 LFA A 1 808 1601 LFA LFA . J 2 LFA A 1 809 1701 LFA LFA . K 2 LFA A 1 810 1801 LFA LFA . L 3 OLC A 1 811 1901 OLC OLC . M 2 LFA A 1 812 2101 LFA LFA . N 2 LFA A 1 813 2301 LFA LFA . O 2 LFA A 1 814 2401 LFA LFA . P 2 LFA A 1 815 2601 LFA LFA . Q 2 LFA A 1 816 2701 LFA LFA . R 2 LFA A 1 817 2801 LFA LFA . S 2 LFA A 1 818 3001 LFA LFA . T 2 LFA A 1 819 3101 LFA LFA . U 2 LFA A 1 820 3201 LFA LFA . V 2 LFA A 1 821 3301 LFA LFA . W 2 LFA A 1 822 3401 LFA LFA . X 2 LFA A 1 823 3501 LFA LFA . Y 3 OLC A 1 824 3601 OLC OLC . Z 2 LFA A 1 825 3701 LFA LFA . AA 4 OLA A 1 826 3801 OLA OLA . BA 2 LFA A 1 827 3901 LFA LFA . CA 2 LFA A 1 828 4001 LFA LFA . DA 5 HOH A 1 901 50 HOH HOH . DA 5 HOH A 2 902 72 HOH HOH . DA 5 HOH A 3 903 54 HOH HOH . DA 5 HOH A 4 904 44 HOH HOH . DA 5 HOH A 5 905 408 HOH HOH . DA 5 HOH A 6 906 51 HOH HOH . DA 5 HOH A 7 907 404 HOH HOH . DA 5 HOH A 8 908 59 HOH HOH . DA 5 HOH A 9 909 34 HOH HOH . DA 5 HOH A 10 910 83 HOH HOH . DA 5 HOH A 11 911 503 HOH HOH . DA 5 HOH A 12 912 402 HOH HOH . DA 5 HOH A 13 913 60 HOH HOH . DA 5 HOH A 14 914 47 HOH HOH . DA 5 HOH A 15 915 55 HOH HOH . DA 5 HOH A 16 916 49 HOH HOH . DA 5 HOH A 17 917 406 HOH HOH . DA 5 HOH A 18 918 65 HOH HOH . DA 5 HOH A 19 919 403 HOH HOH . DA 5 HOH A 20 920 37 HOH HOH . DA 5 HOH A 21 921 401 HOH HOH . DA 5 HOH A 22 922 32 HOH HOH . DA 5 HOH A 23 923 12 HOH HOH . DA 5 HOH A 24 924 405 HOH HOH . DA 5 HOH A 25 925 43 HOH HOH . DA 5 HOH A 26 926 29 HOH HOH . DA 5 HOH A 27 927 38 HOH HOH . DA 5 HOH A 28 928 21 HOH HOH . DA 5 HOH A 29 929 71 HOH HOH . DA 5 HOH A 30 930 17 HOH HOH . DA 5 HOH A 31 931 64 HOH HOH . DA 5 HOH A 32 932 30 HOH HOH . DA 5 HOH A 33 933 35 HOH HOH . DA 5 HOH A 34 934 24 HOH HOH . DA 5 HOH A 35 935 58 HOH HOH . DA 5 HOH A 36 936 42 HOH HOH . DA 5 HOH A 37 937 13 HOH HOH . DA 5 HOH A 38 938 31 HOH HOH . DA 5 HOH A 39 939 502 HOH HOH . DA 5 HOH A 40 940 16 HOH HOH . DA 5 HOH A 41 941 407 HOH HOH . DA 5 HOH A 42 942 82 HOH HOH . DA 5 HOH A 43 943 52 HOH HOH . DA 5 HOH A 44 944 46 HOH HOH . DA 5 HOH A 45 945 23 HOH HOH . DA 5 HOH A 46 946 8 HOH HOH . DA 5 HOH A 47 947 511 HOH HOH . DA 5 HOH A 48 948 26 HOH HOH . DA 5 HOH A 49 949 70 HOH HOH . DA 5 HOH A 50 950 67 HOH HOH . DA 5 HOH A 51 951 501 HOH HOH . DA 5 HOH A 52 952 73 HOH HOH . DA 5 HOH A 53 953 56 HOH HOH . DA 5 HOH A 54 954 62 HOH HOH . DA 5 HOH A 55 955 78 HOH HOH . DA 5 HOH A 56 956 9 HOH HOH . DA 5 HOH A 57 957 61 HOH HOH . DA 5 HOH A 58 958 3 HOH HOH . DA 5 HOH A 59 959 11 HOH HOH . DA 5 HOH A 60 960 63 HOH HOH . DA 5 HOH A 61 961 66 HOH HOH . DA 5 HOH A 62 962 57 HOH HOH . DA 5 HOH A 63 963 53 HOH HOH . DA 5 HOH A 64 964 80 HOH HOH . DA 5 HOH A 65 965 74 HOH HOH . DA 5 HOH A 66 966 76 HOH HOH . DA 5 HOH A 67 967 77 HOH HOH . DA 5 HOH A 68 968 68 HOH HOH . DA 5 HOH A 69 969 18 HOH HOH . DA 5 HOH A 70 970 36 HOH HOH . DA 5 HOH A 71 971 69 HOH HOH . DA 5 HOH A 72 972 75 HOH HOH . DA 5 HOH A 73 973 20 HOH HOH . DA 5 HOH A 74 974 81 HOH HOH . DA 5 HOH A 75 975 33 HOH HOH . DA 5 HOH A 76 976 45 HOH HOH . DA 5 HOH A 77 977 41 HOH HOH . DA 5 HOH A 78 978 79 HOH HOH . DA 5 HOH A 79 979 2 HOH HOH . DA 5 HOH A 80 980 40 HOH HOH . DA 5 HOH A 81 981 19 HOH HOH . DA 5 HOH A 82 982 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . R 2 32.127 25.919 -10.476 1 56.44 ? C1 LFA 817 A 1 HETATM 2 C C2 LFA . . . R 2 32.921 25.582 -9.208 1 57.38 ? C2 LFA 817 A 1 HETATM 3 C C3 LFA . . . R 2 32.261 24.418 -8.476 1 57.03 ? C3 LFA 817 A 1 HETATM 4 C C4 LFA . . . R 2 33.097 24.024 -7.256 1 56.36 ? C4 LFA 817 A 1 HETATM 5 C C5 LFA . . . R 2 32.872 25.008 -6.104 1 55.19 ? C5 LFA 817 A 1 HETATM 6 C C6 LFA . . . R 2 32.974 24.257 -4.772 1 54.26 ? C6 LFA 817 A 1 HETATM 7 C C7 LFA . . . R 2 32.9 25.225 -3.586 1 53.37 ? C7 LFA 817 A 1 HETATM 8 C C8 LFA . . . R 2 32.49 24.458 -2.324 1 52.91 ? C8 LFA 817 A 1 HETATM 9 C C9 LFA . . . R 2 33.17 25.051 -1.087 1 53.38 ? C9 LFA 817 A 1 HETATM 10 C C10 LFA . . . R 2 32.895 26.545 -1.021 1 54.49 ? C10 LFA 817 A 1 HETATM 11 C C11 LFA . . . R 2 33.578 27.126 0.219 1 55.38 ? C11 LFA 817 A 1 HETATM 12 C C12 LFA . . . R 2 32.544 27.814 1.106 1 56.68 ? C12 LFA 817 A 1 HETATM 13 C C13 LFA . . . R 2 32.717 27.348 2.558 1 57.04 ? C13 LFA 817 A 1 HETATM 14 C C14 LFA . . . R 2 32.317 28.468 3.516 1 57.42 ? C14 LFA 817 A 1 HETATM 15 H H11 LFA . . . R 2 32.642 26.699 -11.029 1 67.43 ? H11 LFA 817 A 1 HETATM 16 H H12 LFA . . . R 2 32.042 25.032 -11.096 1 67.43 ? H12 LFA 817 A 1 HETATM 17 H H13 LFA . . . R 2 31.135 26.265 -10.201 1 67.43 ? H13 LFA 817 A 1 HETATM 18 H H21 LFA . . . R 2 32.943 26.446 -8.555 1 68.56 ? H21 LFA 817 A 1 HETATM 19 H H22 LFA . . . R 2 33.939 25.313 -9.47 1 68.56 ? H22 LFA 817 A 1 HETATM 20 H H31 LFA . . . R 2 32.168 23.566 -9.141 1 68.13 ? H31 LFA 817 A 1 HETATM 21 H H32 LFA . . . R 2 31.273 24.727 -8.153 1 68.13 ? H32 LFA 817 A 1 HETATM 22 H H41 LFA . . . R 2 34.148 24.028 -7.526 1 67.34 ? H41 LFA 817 A 1 HETATM 23 H H42 LFA . . . R 2 32.823 23.026 -6.931 1 67.34 ? H42 LFA 817 A 1 HETATM 24 H H51 LFA . . . R 2 33.629 25.784 -6.143 1 65.93 ? H51 LFA 817 A 1 HETATM 25 H H52 LFA . . . R 2 31.889 25.459 -6.185 1 65.93 ? H52 LFA 817 A 1 HETATM 26 H H61 LFA . . . R 2 32.157 23.547 -4.705 1 64.81 ? H61 LFA 817 A 1 HETATM 27 H H62 LFA . . . R 2 33.916 23.72 -4.733 1 64.81 ? H62 LFA 817 A 1 HETATM 28 H H71 LFA . . . R 2 33.869 25.691 -3.44 1 63.75 ? H71 LFA 817 A 1 HETATM 29 H H72 LFA . . . R 2 32.16 25.991 -3.792 1 63.75 ? H72 LFA 817 A 1 HETATM 30 H H81 LFA . . . R 2 32.747 23.408 -2.419 1 63.19 ? H81 LFA 817 A 1 HETATM 31 H H82 LFA . . . R 2 31.418 24.561 -2.208 1 63.19 ? H82 LFA 817 A 1 HETATM 32 H H91 LFA . . . R 2 32.791 24.572 -0.19 1 63.76 ? H91 LFA 817 A 1 HETATM 33 H H92 LFA . . . R 2 34.239 24.892 -1.146 1 63.76 ? H92 LFA 817 A 1 HETATM 34 H H101 LFA . . . R 2 33.29 27.057 -1.89 1 65.09 ? H101 LFA 817 A 1 HETATM 35 H H102 LFA . . . R 2 31.824 26.695 -0.981 1 65.09 ? H102 LFA 817 A 1 HETATM 36 H H111 LFA . . . R 2 34.318 27.855 -0.093 1 66.16 ? H111 LFA 817 A 1 HETATM 37 H H112 LFA . . . R 2 34.072 26.331 0.767 1 66.16 ? H112 LFA 817 A 1 HETATM 38 H H121 LFA . . . R 2 32.69 28.888 1.052 1 67.71 ? H121 LFA 817 A 1 HETATM 39 H H122 LFA . . . R 2 31.536 27.575 0.79 1 67.71 ? H122 LFA 817 A 1 HETATM 40 H H131 LFA . . . R 2 32.098 26.475 2.736 1 68.15 ? H131 LFA 817 A 1 HETATM 41 H H132 LFA . . . R 2 33.756 27.096 2.74 1 68.15 ? H132 LFA 817 A 1 HETATM 42 H H142 LFA . a . R 2 32.635 28.213 4.522 0.5 68.61 ? H142 LFA 817 A 1 HETATM 43 H H142 LFA . b . R 2 32.792 29.395 3.213 0.5 68.61 ? H142 LFA 817 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #