data_7Z09
#
_model_server_result.job_id            pJSBp1GWW6RIIL1zUYzuKg 
_model_server_result.datetime_utc      '2024-11-23 05:31:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z09 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":824}' 
#
_entry.id    7Z09 
#
_exptl.entry_id    7Z09 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7Z09 
_cell.length_a            60.73 
_cell.length_b            60.73 
_cell.length_c            110.27 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z09 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 L N N 
? 3 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 215 A ALA 215 1_555 A N LYR 216 A LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C LYR 216 A LYR 216 1_555 A N VAL 217 A VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 389 n n 
C10 C9 OLC doub 390 n n 
C10 C11 OLC sing 391 n n 
C9 C8 OLC sing 392 n n 
C17 C16 OLC sing 393 z n 
C11 C12 OLC sing 394 n n 
C8 C7 OLC sing 395 n n 
C24 C22 OLC sing 396 n n 
C24 O25 OLC sing 397 n n 
C16 C15 OLC sing 398 n n 
C12 C13 OLC sing 399 n n 
C7 C6 OLC sing 400 n n 
C15 C14 OLC sing 401 n n 
C13 C14 OLC sing 402 n n 
C6 C5 OLC sing 403 n n 
C5 C4 OLC sing 404 n n 
C4 C3 OLC sing 405 n n 
C3 C2 OLC sing 406 n n 
C2 C1 OLC sing 407 n n 
C21 C22 OLC sing 408 n n 
C21 O20 OLC sing 409 n n 
C1 O19 OLC doub 410 n n 
C1 O20 OLC sing 411 n n 
C22 O23 OLC sing 412 n n 
C18 H18 OLC sing 413 n n 
C18 H18A OLC sing 414 n n 
C18 H18B OLC sing 415 n n 
C10 H10 OLC sing 416 n n 
C9 H9 OLC sing 417 n n 
C17 H17 OLC sing 418 n n 
C17 H17A OLC sing 419 n n 
C11 H11 OLC sing 420 n n 
C11 H11A OLC sing 421 n n 
C8 H8 OLC sing 422 n n 
C8 H8A OLC sing 423 n n 
C24 H24 OLC sing 424 n n 
C24 H24A OLC sing 425 n n 
C16 H16 OLC sing 426 n n 
C16 H16A OLC sing 427 n n 
C12 H12 OLC sing 428 n n 
C12 H12A OLC sing 429 n n 
C7 H7 OLC sing 430 n n 
C7 H7A OLC sing 431 n n 
C15 H15 OLC sing 432 n n 
C15 H15A OLC sing 433 n n 
C13 H13 OLC sing 434 n n 
C13 H13A OLC sing 435 n n 
C6 H6 OLC sing 436 n n 
C6 H6A OLC sing 437 n n 
C14 H14 OLC sing 438 n n 
C14 H14A OLC sing 439 n n 
C5 H5 OLC sing 440 n n 
C5 H5A OLC sing 441 n n 
C4 H4 OLC sing 442 n n 
C4 H4A OLC sing 443 n n 
C3 H3 OLC sing 444 n n 
C3 H3A OLC sing 445 n n 
C2 H2 OLC sing 446 n n 
C2 H2A OLC sing 447 n n 
C21 H21 OLC sing 448 n n 
C21 H21A OLC sing 449 n n 
C22 H22 OLC sing 450 n n 
O25 HO25 OLC sing 451 n n 
O23 HO23 OLC sing 452 n n 
#
_atom_sites.entry_id                     7Z09 
_atom_sites.fract_transf_matrix[1][1]    0.016466 
_atom_sites.fract_transf_matrix[1][2]    0.009507 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009069 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LFA A 1 801 801 LFA LFA . 
C 2 LFA A 1 802 1001 LFA LFA . 
D 3 OLC A 1 803 1101 OLC OLC . 
E 2 LFA A 1 804 1201 LFA LFA . 
F 2 LFA A 1 805 1301 LFA LFA . 
G 2 LFA A 1 806 1401 LFA LFA . 
H 2 LFA A 1 807 1501 LFA LFA . 
I 2 LFA A 1 808 1601 LFA LFA . 
J 2 LFA A 1 809 1701 LFA LFA . 
K 2 LFA A 1 810 1801 LFA LFA . 
L 3 OLC A 1 811 1901 OLC OLC . 
M 2 LFA A 1 812 2101 LFA LFA . 
N 2 LFA A 1 813 2301 LFA LFA . 
O 2 LFA A 1 814 2401 LFA LFA . 
P 2 LFA A 1 815 2601 LFA LFA . 
Q 2 LFA A 1 816 2701 LFA LFA . 
R 2 LFA A 1 817 2801 LFA LFA . 
S 2 LFA A 1 818 3001 LFA LFA . 
T 2 LFA A 1 819 3101 LFA LFA . 
U 2 LFA A 1 820 3201 LFA LFA . 
V 2 LFA A 1 821 3301 LFA LFA . 
W 2 LFA A 1 822 3401 LFA LFA . 
X 2 LFA A 1 823 3501 LFA LFA . 
Y 3 OLC A 1 824 3601 OLC OLC . 
Z 2 LFA A 1 825 3701 LFA LFA . 
AA 4 OLA A 1 826 3801 OLA OLA . 
BA 2 LFA A 1 827 3901 LFA LFA . 
CA 2 LFA A 1 828 4001 LFA LFA . 
DA 5 HOH A 1 901 50 HOH HOH . 
DA 5 HOH A 2 902 72 HOH HOH . 
DA 5 HOH A 3 903 54 HOH HOH . 
DA 5 HOH A 4 904 44 HOH HOH . 
DA 5 HOH A 5 905 408 HOH HOH . 
DA 5 HOH A 6 906 51 HOH HOH . 
DA 5 HOH A 7 907 404 HOH HOH . 
DA 5 HOH A 8 908 59 HOH HOH . 
DA 5 HOH A 9 909 34 HOH HOH . 
DA 5 HOH A 10 910 83 HOH HOH . 
DA 5 HOH A 11 911 503 HOH HOH . 
DA 5 HOH A 12 912 402 HOH HOH . 
DA 5 HOH A 13 913 60 HOH HOH . 
DA 5 HOH A 14 914 47 HOH HOH . 
DA 5 HOH A 15 915 55 HOH HOH . 
DA 5 HOH A 16 916 49 HOH HOH . 
DA 5 HOH A 17 917 406 HOH HOH . 
DA 5 HOH A 18 918 65 HOH HOH . 
DA 5 HOH A 19 919 403 HOH HOH . 
DA 5 HOH A 20 920 37 HOH HOH . 
DA 5 HOH A 21 921 401 HOH HOH . 
DA 5 HOH A 22 922 32 HOH HOH . 
DA 5 HOH A 23 923 12 HOH HOH . 
DA 5 HOH A 24 924 405 HOH HOH . 
DA 5 HOH A 25 925 43 HOH HOH . 
DA 5 HOH A 26 926 29 HOH HOH . 
DA 5 HOH A 27 927 38 HOH HOH . 
DA 5 HOH A 28 928 21 HOH HOH . 
DA 5 HOH A 29 929 71 HOH HOH . 
DA 5 HOH A 30 930 17 HOH HOH . 
DA 5 HOH A 31 931 64 HOH HOH . 
DA 5 HOH A 32 932 30 HOH HOH . 
DA 5 HOH A 33 933 35 HOH HOH . 
DA 5 HOH A 34 934 24 HOH HOH . 
DA 5 HOH A 35 935 58 HOH HOH . 
DA 5 HOH A 36 936 42 HOH HOH . 
DA 5 HOH A 37 937 13 HOH HOH . 
DA 5 HOH A 38 938 31 HOH HOH . 
DA 5 HOH A 39 939 502 HOH HOH . 
DA 5 HOH A 40 940 16 HOH HOH . 
DA 5 HOH A 41 941 407 HOH HOH . 
DA 5 HOH A 42 942 82 HOH HOH . 
DA 5 HOH A 43 943 52 HOH HOH . 
DA 5 HOH A 44 944 46 HOH HOH . 
DA 5 HOH A 45 945 23 HOH HOH . 
DA 5 HOH A 46 946 8 HOH HOH . 
DA 5 HOH A 47 947 511 HOH HOH . 
DA 5 HOH A 48 948 26 HOH HOH . 
DA 5 HOH A 49 949 70 HOH HOH . 
DA 5 HOH A 50 950 67 HOH HOH . 
DA 5 HOH A 51 951 501 HOH HOH . 
DA 5 HOH A 52 952 73 HOH HOH . 
DA 5 HOH A 53 953 56 HOH HOH . 
DA 5 HOH A 54 954 62 HOH HOH . 
DA 5 HOH A 55 955 78 HOH HOH . 
DA 5 HOH A 56 956 9 HOH HOH . 
DA 5 HOH A 57 957 61 HOH HOH . 
DA 5 HOH A 58 958 3 HOH HOH . 
DA 5 HOH A 59 959 11 HOH HOH . 
DA 5 HOH A 60 960 63 HOH HOH . 
DA 5 HOH A 61 961 66 HOH HOH . 
DA 5 HOH A 62 962 57 HOH HOH . 
DA 5 HOH A 63 963 53 HOH HOH . 
DA 5 HOH A 64 964 80 HOH HOH . 
DA 5 HOH A 65 965 74 HOH HOH . 
DA 5 HOH A 66 966 76 HOH HOH . 
DA 5 HOH A 67 967 77 HOH HOH . 
DA 5 HOH A 68 968 68 HOH HOH . 
DA 5 HOH A 69 969 18 HOH HOH . 
DA 5 HOH A 70 970 36 HOH HOH . 
DA 5 HOH A 71 971 69 HOH HOH . 
DA 5 HOH A 72 972 75 HOH HOH . 
DA 5 HOH A 73 973 20 HOH HOH . 
DA 5 HOH A 74 974 81 HOH HOH . 
DA 5 HOH A 75 975 33 HOH HOH . 
DA 5 HOH A 76 976 45 HOH HOH . 
DA 5 HOH A 77 977 41 HOH HOH . 
DA 5 HOH A 78 978 79 HOH HOH . 
DA 5 HOH A 79 979 2 HOH HOH . 
DA 5 HOH A 80 980 40 HOH HOH . 
DA 5 HOH A 81 981 19 HOH HOH . 
DA 5 HOH A 82 982 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . Y 3 5.098 32.063 -9.825 1 45.81 ? C24 OLC 824 A 1 
HETATM 2 C C6 OLC . . . Y 3 6.3 30.085 -0.293 1 38.26 ? C6 OLC 824 A 1 
HETATM 3 C C5 OLC . . . Y 3 5.958 29.487 -1.659 1 37.68 ? C5 OLC 824 A 1 
HETATM 4 C C4 OLC . . . Y 3 5.386 30.599 -2.528 1 38.51 ? C4 OLC 824 A 1 
HETATM 5 C C3 OLC . . . Y 3 4.542 30.004 -3.651 1 38.62 ? C3 OLC 824 A 1 
HETATM 6 C C2 OLC . . . Y 3 3.842 31.129 -4.407 1 38.71 ? C2 OLC 824 A 1 
HETATM 7 C C21 OLC . . . Y 3 4.051 32.295 -7.563 1 43.94 ? C21 OLC 824 A 1 
HETATM 8 C C1 OLC . . . Y 3 3.696 30.718 -5.877 1 39.75 ? C1 OLC 824 A 1 
HETATM 9 C C22 OLC . . . Y 3 3.777 32.13 -9.065 1 45.6 ? C22 OLC 824 A 1 
HETATM 10 O O19 OLC . . . Y 3 4.086 29.658 -6.228 1 41.62 ? O19 OLC 824 A 1 
HETATM 11 O O25 OLC . . . Y 3 5.292 33.242 -10.559 1 45.19 ? O25 OLC 824 A 1 
HETATM 12 O O23 OLC . . . Y 3 3.064 30.951 -9.285 1 46.12 ? O23 OLC 824 A 1 
HETATM 13 O O20 OLC . . . Y 3 3.116 31.574 -6.816 1 39.42 ? O20 OLC 824 A 1 
HETATM 14 H H24 OLC . . . Y 3 5.914 31.938 -9.119 1 54.68 ? H24 OLC 824 A 1 
HETATM 15 H H24A OLC . . . Y 3 5.079 31.214 -10.507 1 54.68 ? H24A OLC 824 A 1 
HETATM 16 H H6 OLC . . . Y 3 5.588 30.867 -0.051 1 45.61 ? H6 OLC 824 A 1 
HETATM 17 H H6A OLC . . . Y 3 7.308 30.506 -0.321 1 45.61 ? H6A OLC 824 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#