data_7Z0D # _model_server_result.job_id wsGlvHWNwLj0_EIhQEJgag _model_server_result.datetime_utc '2024-11-23 05:01:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":821}' # _entry.id 7Z0D # _exptl.entry_id 7Z0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z0D _cell.length_a 60.92 _cell.length_b 60.92 _cell.length_c 110.18 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 Y N N ? 2 AA N N ? 2 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 215 A ALA 215 1_555 A N LYR 216 A LYR 216 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C ALA 215 A ALA 215 1_555 A N LYR 216 A LYR 216 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C LYR 216 A LYR 216 1_555 A N VAL 217 A VAL 217 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C LYR 216 A LYR 216 1_555 A N VAL 217 A VAL 217 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 160 n n C1 H11 LFA sing 161 n n C1 H12 LFA sing 162 n n C1 H13 LFA sing 163 n n C2 C3 LFA sing 164 n n C2 H21 LFA sing 165 n n C2 H22 LFA sing 166 n n C3 C4 LFA sing 167 n n C3 H31 LFA sing 168 n n C3 H32 LFA sing 169 n n C4 C5 LFA sing 170 n n C4 H41 LFA sing 171 n n C4 H42 LFA sing 172 n n C5 C6 LFA sing 173 n n C5 H51 LFA sing 174 n n C5 H52 LFA sing 175 n n C6 C7 LFA sing 176 n n C6 H61 LFA sing 177 n n C6 H62 LFA sing 178 n n C7 C8 LFA sing 179 n n C7 H71 LFA sing 180 n n C7 H72 LFA sing 181 n n C8 C9 LFA sing 182 n n C8 H81 LFA sing 183 n n C8 H82 LFA sing 184 n n C9 C10 LFA sing 185 n n C9 H91 LFA sing 186 n n C9 H92 LFA sing 187 n n C10 C11 LFA sing 188 n n C10 H101 LFA sing 189 n n C10 H102 LFA sing 190 n n C11 C12 LFA sing 191 n n C11 H111 LFA sing 192 n n C11 H112 LFA sing 193 n n C12 C13 LFA sing 194 n n C12 H121 LFA sing 195 n n C12 H122 LFA sing 196 n n C13 C14 LFA sing 197 n n C13 H131 LFA sing 198 n n C13 H132 LFA sing 199 n n C14 C15 LFA sing 200 n n C14 H141 LFA sing 201 n n C14 H142 LFA sing 202 n n C15 C16 LFA sing 203 n n C15 H151 LFA sing 204 n n C15 H152 LFA sing 205 n n C16 C17 LFA sing 206 n n C16 H161 LFA sing 207 n n C16 H162 LFA sing 208 n n C17 C18 LFA sing 209 n n C17 H171 LFA sing 210 n n C17 H172 LFA sing 211 n n C18 C19 LFA sing 212 n n C18 H181 LFA sing 213 n n C18 H182 LFA sing 214 n n C19 C20 LFA sing 215 n n C19 H191 LFA sing 216 n n C19 H192 LFA sing 217 n n C20 H201 LFA sing 218 n n C20 H202 LFA sing 219 n n C20 H203 LFA sing 220 n n # _atom_sites.entry_id 7Z0D _atom_sites.fract_transf_matrix[1][1] 0.016415 _atom_sites.fract_transf_matrix[1][2] 0.009477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 801 801 LFA LFA . C 2 LFA A 1 802 1001 LFA LFA . D 3 OLC A 1 803 1101 OLC OLC . E 2 LFA A 1 804 1201 LFA LFA . F 2 LFA A 1 805 1301 LFA LFA . G 2 LFA A 1 806 1401 LFA LFA . H 2 LFA A 1 807 1501 LFA LFA . I 2 LFA A 1 808 1601 LFA LFA . J 2 LFA A 1 809 1701 LFA LFA . K 2 LFA A 1 810 1801 LFA LFA . L 3 OLC A 1 811 1901 OLC OLC . M 2 LFA A 1 812 2101 LFA LFA . N 2 LFA A 1 813 2301 LFA LFA . O 2 LFA A 1 814 2401 LFA LFA . P 2 LFA A 1 815 2601 LFA LFA . Q 2 LFA A 1 816 2701 LFA LFA . R 2 LFA A 1 817 2801 LFA LFA . S 2 LFA A 1 818 3001 LFA LFA . T 2 LFA A 1 819 3101 LFA LFA . U 2 LFA A 1 820 3201 LFA LFA . V 2 LFA A 1 821 3401 LFA LFA . W 2 LFA A 1 822 3501 LFA LFA . X 3 OLC A 1 823 3601 OLC OLC . Y 2 LFA A 1 824 3701 LFA LFA . Z 4 OLA A 1 825 3801 OLA OLA . AA 2 LFA A 1 826 4001 LFA LFA . BA 2 LFA A 1 827 4101 LFA LFA . CA 5 HOH A 1 901 50 HOH HOH . CA 5 HOH A 2 902 72 HOH HOH . CA 5 HOH A 3 903 54 HOH HOH . CA 5 HOH A 4 904 44 HOH HOH . CA 5 HOH A 5 905 83 HOH HOH . CA 5 HOH A 6 906 408 HOH HOH . CA 5 HOH A 7 907 404 HOH HOH . CA 5 HOH A 8 908 51 HOH HOH . CA 5 HOH A 9 909 34 HOH HOH . CA 5 HOH A 10 910 47 HOH HOH . CA 5 HOH A 11 911 59 HOH HOH . CA 5 HOH A 12 912 503 HOH HOH . CA 5 HOH A 13 913 60 HOH HOH . CA 5 HOH A 14 914 402 HOH HOH . CA 5 HOH A 15 915 49 HOH HOH . CA 5 HOH A 16 916 406 HOH HOH . CA 5 HOH A 17 917 12 HOH HOH . CA 5 HOH A 18 918 65 HOH HOH . CA 5 HOH A 19 919 37 HOH HOH . CA 5 HOH A 20 920 403 HOH HOH . CA 5 HOH A 21 921 35 HOH HOH . CA 5 HOH A 22 922 55 HOH HOH . CA 5 HOH A 23 923 401 HOH HOH . CA 5 HOH A 24 924 32 HOH HOH . CA 5 HOH A 25 925 29 HOH HOH . CA 5 HOH A 26 926 405 HOH HOH . CA 5 HOH A 27 927 38 HOH HOH . CA 5 HOH A 28 928 84 HOH HOH . CA 5 HOH A 29 929 17 HOH HOH . CA 5 HOH A 30 930 71 HOH HOH . CA 5 HOH A 31 931 407 HOH HOH . CA 5 HOH A 32 932 21 HOH HOH . CA 5 HOH A 33 933 82 HOH HOH . CA 5 HOH A 34 934 67 HOH HOH . CA 5 HOH A 35 935 58 HOH HOH . CA 5 HOH A 36 936 43 HOH HOH . CA 5 HOH A 37 937 13 HOH HOH . CA 5 HOH A 38 938 42 HOH HOH . CA 5 HOH A 39 939 23 HOH HOH . CA 5 HOH A 40 940 52 HOH HOH . CA 5 HOH A 41 941 511 HOH HOH . CA 5 HOH A 42 942 31 HOH HOH . CA 5 HOH A 43 943 30 HOH HOH . CA 5 HOH A 44 944 46 HOH HOH . CA 5 HOH A 45 945 502 HOH HOH . CA 5 HOH A 46 946 8 HOH HOH . CA 5 HOH A 47 947 24 HOH HOH . CA 5 HOH A 48 948 73 HOH HOH . CA 5 HOH A 49 949 61 HOH HOH . CA 5 HOH A 50 950 26 HOH HOH . CA 5 HOH A 51 951 56 HOH HOH . CA 5 HOH A 52 952 62 HOH HOH . CA 5 HOH A 53 953 16 HOH HOH . CA 5 HOH A 54 954 501 HOH HOH . CA 5 HOH A 55 955 11 HOH HOH . CA 5 HOH A 56 956 9 HOH HOH . CA 5 HOH A 57 957 3 HOH HOH . CA 5 HOH A 58 958 78 HOH HOH . CA 5 HOH A 59 959 504 HOH HOH . CA 5 HOH A 60 960 63 HOH HOH . CA 5 HOH A 61 961 57 HOH HOH . CA 5 HOH A 62 962 66 HOH HOH . CA 5 HOH A 63 963 64 HOH HOH . CA 5 HOH A 64 964 74 HOH HOH . CA 5 HOH A 65 965 53 HOH HOH . CA 5 HOH A 66 966 77 HOH HOH . CA 5 HOH A 67 967 76 HOH HOH . CA 5 HOH A 68 968 80 HOH HOH . CA 5 HOH A 69 969 18 HOH HOH . CA 5 HOH A 70 970 68 HOH HOH . CA 5 HOH A 71 971 36 HOH HOH . CA 5 HOH A 72 972 81 HOH HOH . CA 5 HOH A 73 973 75 HOH HOH . CA 5 HOH A 74 974 70 HOH HOH . CA 5 HOH A 75 975 33 HOH HOH . CA 5 HOH A 76 976 45 HOH HOH . CA 5 HOH A 77 977 20 HOH HOH . CA 5 HOH A 78 978 41 HOH HOH . CA 5 HOH A 79 979 2 HOH HOH . CA 5 HOH A 80 980 40 HOH HOH . CA 5 HOH A 81 981 39 HOH HOH . CA 5 HOH A 82 982 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . V 2 5.116 38.121 -11.77 1 49.58 ? C1 LFA 821 A 1 HETATM 2 C C2 LFA . . . V 2 4.573 37.254 -10.657 1 48.66 ? C2 LFA 821 A 1 HETATM 3 C C3 LFA . . . V 2 5.604 36.775 -9.666 1 47.38 ? C3 LFA 821 A 1 HETATM 4 C C4 LFA . . . V 2 5.069 36.053 -8.461 1 45.72 ? C4 LFA 821 A 1 HETATM 5 C C5 LFA . . . V 2 5.444 36.653 -7.139 1 44.1 ? C5 LFA 821 A 1 HETATM 6 C C6 LFA . . . V 2 4.891 35.912 -5.953 1 44.31 ? C6 LFA 821 A 1 HETATM 7 C C7 LFA . . . V 2 5.123 36.572 -4.617 1 42.96 ? C7 LFA 821 A 1 HETATM 8 C C8 LFA . . . V 2 5.488 35.615 -3.519 1 43.21 ? C8 LFA 821 A 1 HETATM 9 C C9 LFA . . . V 2 5.279 36.092 -2.105 1 44.29 ? C9 LFA 821 A 1 HETATM 10 C C10 LFA . . . V 2 4.641 35.046 -1.229 1 46.82 ? C10 LFA 821 A 1 HETATM 11 C C11 LFA . . . V 2 4.259 35.49 0.148 1 48.75 ? C11 LFA 821 A 1 HETATM 12 C C12 LFA . . . V 2 3.154 34.684 0.791 1 49.75 ? C12 LFA 821 A 1 HETATM 13 C C13 LFA . . . V 2 3.11 33.237 0.38 1 50.11 ? C13 LFA 821 A 1 HETATM 14 C C14 LFA . . . V 2 2.385 32.332 1.341 1 49.35 ? C14 LFA 821 A 1 HETATM 15 C C15 LFA . . . V 2 2.791 30.886 1.254 1 48.39 ? C15 LFA 821 A 1 HETATM 16 H H11 LFA . . . V 2 5.53 38.912 -11.391 1 59.5 ? H11 LFA 821 A 1 HETATM 17 H H12 LFA . . . V 2 5.776 37.622 -12.275 1 59.5 ? H12 LFA 821 A 1 HETATM 18 H H13 LFA . . . V 2 4.391 38.385 -12.357 1 59.5 ? H13 LFA 821 A 1 HETATM 19 H H21 LFA . . . V 2 3.9 37.76 -10.176 1 58.39 ? H21 LFA 821 A 1 HETATM 20 H H22 LFA . . . V 2 4.148 36.478 -11.054 1 58.39 ? H22 LFA 821 A 1 HETATM 21 H H31 LFA . . . V 2 6.214 36.179 -10.129 1 56.86 ? H31 LFA 821 A 1 HETATM 22 H H32 LFA . . . V 2 6.107 37.545 -9.358 1 56.86 ? H32 LFA 821 A 1 HETATM 23 H H41 LFA . . . V 2 4.101 36.034 -8.523 1 54.86 ? H41 LFA 821 A 1 HETATM 24 H H42 LFA . . . V 2 5.395 35.14 -8.484 1 54.86 ? H42 LFA 821 A 1 HETATM 25 H H51 LFA . . . V 2 5.118 37.566 -7.111 1 52.92 ? H51 LFA 821 A 1 HETATM 26 H H52 LFA . . . V 2 6.411 36.667 -7.07 1 52.92 ? H52 LFA 821 A 1 HETATM 27 H H61 LFA . . . V 2 3.935 35.808 -6.079 1 53.17 ? H61 LFA 821 A 1 HETATM 28 H H62 LFA . . . V 2 5.294 35.03 -5.931 1 53.17 ? H62 LFA 821 A 1 HETATM 29 H H71 LFA . . . V 2 5.839 37.219 -4.713 1 51.56 ? H71 LFA 821 A 1 HETATM 30 H H72 LFA . . . V 2 4.314 37.042 -4.362 1 51.56 ? H72 LFA 821 A 1 HETATM 31 H H81 LFA . . . V 2 6.425 35.388 -3.621 1 51.85 ? H81 LFA 821 A 1 HETATM 32 H H82 LFA . . . V 2 4.967 34.806 -3.643 1 51.85 ? H82 LFA 821 A 1 HETATM 33 H H91 LFA . . . V 2 6.139 36.335 -1.727 1 53.15 ? H91 LFA 821 A 1 HETATM 34 H H92 LFA . . . V 2 4.71 36.877 -2.119 1 53.15 ? H92 LFA 821 A 1 HETATM 35 H H101 LFA . . . V 2 3.841 34.733 -1.679 1 56.19 ? H101 LFA 821 A 1 HETATM 36 H H102 LFA . . . V 2 5.257 34.301 -1.148 1 56.19 ? H102 LFA 821 A 1 HETATM 37 H H111 LFA . . . V 2 4.006 36.426 0.127 1 58.5 ? H111 LFA 821 A 1 HETATM 38 H H112 LFA . . . V 2 5.053 35.381 0.687 1 58.5 ? H112 LFA 821 A 1 HETATM 39 H H121 LFA . . . V 2 3.266 34.727 1.753 1 59.7 ? H121 LFA 821 A 1 HETATM 40 H H122 LFA . . . V 2 2.305 35.093 0.562 1 59.7 ? H122 LFA 821 A 1 HETATM 41 H H131 LFA . . . V 2 2.674 33.176 -0.484 1 60.13 ? H131 LFA 821 A 1 HETATM 42 H H132 LFA . . . V 2 4.02 32.914 0.29 1 60.13 ? H132 LFA 821 A 1 HETATM 43 H H141 LFA . . . V 2 1.433 32.395 1.164 1 59.22 ? H141 LFA 821 A 1 HETATM 44 H H142 LFA . . . V 2 2.552 32.643 2.244 1 59.22 ? H142 LFA 821 A 1 HETATM 45 H H152 LFA . a . V 2 2.715 30.584 0.335 0.5 58.07 ? H152 LFA 821 A 1 HETATM 46 H H152 LFA . b . V 2 3.709 30.79 1.551 0.5 58.07 ? H152 LFA 821 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #