data_7Z0F # _model_server_result.job_id cDaH6KfP_crkrqiQpO2dCg _model_server_result.datetime_utc '2024-11-26 05:40:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 7Z0F # _exptl.entry_id 7Z0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.61 _cell.angle_gamma 90 _cell.entry_id 7Z0F _cell.length_a 54.28 _cell.length_b 86.71 _cell.length_c 137.61 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2G GTP . A GTP 600 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 E O1B GTP . A GTP 600 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc3 F MG MG . A MG 601 1_555 I O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc4 F MG MG . A MG 601 1_555 I O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc5 F MG MG . A MG 601 1_555 I O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc6 F MG MG . A MG 601 1_555 I O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 187 n n PG O2G GTP sing 188 n n PG O3G GTP sing 189 n n PG O3B GTP sing 190 n n O2G HOG2 GTP sing 191 n n O3G HOG3 GTP sing 192 n n O3B PB GTP sing 193 n n PB O1B GTP doub 194 n n PB O2B GTP sing 195 n n PB O3A GTP sing 196 n n O2B HOB2 GTP sing 197 n n O3A PA GTP sing 198 n n PA O1A GTP doub 199 n n PA O2A GTP sing 200 n n PA O5' GTP sing 201 n n O2A HOA2 GTP sing 202 n n O5' C5' GTP sing 203 n n C5' C4' GTP sing 204 n n C5' H5' GTP sing 205 n n C5' "H5''" GTP sing 206 n n C4' O4' GTP sing 207 n n C4' C3' GTP sing 208 n n C4' H4' GTP sing 209 n n O4' C1' GTP sing 210 n n C3' O3' GTP sing 211 n n C3' C2' GTP sing 212 n n C3' H3' GTP sing 213 n n O3' HO3' GTP sing 214 n n C2' O2' GTP sing 215 n n C2' C1' GTP sing 216 n n C2' H2' GTP sing 217 n n O2' HO2' GTP sing 218 n n C1' N9 GTP sing 219 n n C1' H1' GTP sing 220 n n N9 C8 GTP sing 221 n y N9 C4 GTP sing 222 n y C8 N7 GTP doub 223 n y C8 H8 GTP sing 224 n n N7 C5 GTP sing 225 n y C5 C6 GTP sing 226 n n C5 C4 GTP doub 227 n y C6 O6 GTP doub 228 n n C6 N1 GTP sing 229 n n N1 C2 GTP sing 230 n n N1 HN1 GTP sing 231 n n C2 N2 GTP sing 232 n n C2 N3 GTP doub 233 n n N2 HN21 GTP sing 234 n n N2 HN22 GTP sing 235 n n N3 C4 GTP sing 236 n n # _atom_sites.entry_id 7Z0F _atom_sites.fract_transf_matrix[1][1] 0.018423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 600 600 GTP GTP . F 6 MG A 1 601 601 MG MG . G 7 GDP B 1 600 600 GDP GDP . H 8 GOL C 1 500 500 GOL GOL . I 9 HOH A 1 701 143 HOH HOH . I 9 HOH A 2 702 107 HOH HOH . I 9 HOH A 3 703 602 HOH HOH . I 9 HOH A 4 704 13 HOH HOH . I 9 HOH A 5 705 79 HOH HOH . I 9 HOH A 6 706 19 HOH HOH . I 9 HOH A 7 707 145 HOH HOH . I 9 HOH A 8 708 66 HOH HOH . I 9 HOH A 9 709 51 HOH HOH . I 9 HOH A 10 710 59 HOH HOH . I 9 HOH A 11 711 80 HOH HOH . I 9 HOH A 12 712 121 HOH HOH . I 9 HOH A 13 713 604 HOH HOH . I 9 HOH A 14 714 92 HOH HOH . I 9 HOH A 15 715 14 HOH HOH . I 9 HOH A 16 716 603 HOH HOH . I 9 HOH A 17 717 1 HOH HOH . I 9 HOH A 18 718 128 HOH HOH . I 9 HOH A 19 719 2 HOH HOH . I 9 HOH A 20 720 81 HOH HOH . I 9 HOH A 21 721 605 HOH HOH . I 9 HOH A 22 722 106 HOH HOH . I 9 HOH A 23 723 17 HOH HOH . I 9 HOH A 24 724 43 HOH HOH . I 9 HOH A 25 725 83 HOH HOH . I 9 HOH A 26 726 88 HOH HOH . I 9 HOH A 27 727 18 HOH HOH . I 9 HOH A 28 728 30 HOH HOH . I 9 HOH A 29 729 103 HOH HOH . I 9 HOH A 30 730 87 HOH HOH . I 9 HOH A 31 731 38 HOH HOH . I 9 HOH A 32 732 151 HOH HOH . I 9 HOH A 33 733 16 HOH HOH . I 9 HOH A 34 734 86 HOH HOH . I 9 HOH A 35 735 54 HOH HOH . I 9 HOH A 36 736 91 HOH HOH . I 9 HOH A 37 737 85 HOH HOH . I 9 HOH A 38 738 144 HOH HOH . I 9 HOH A 39 739 77 HOH HOH . I 9 HOH A 40 740 117 HOH HOH . I 9 HOH A 41 741 4 HOH HOH . I 9 HOH A 42 742 31 HOH HOH . I 9 HOH A 43 743 37 HOH HOH . I 9 HOH A 44 744 12 HOH HOH . I 9 HOH A 45 745 95 HOH HOH . I 9 HOH A 46 746 41 HOH HOH . I 9 HOH A 47 747 135 HOH HOH . I 9 HOH A 48 748 125 HOH HOH . I 9 HOH A 49 749 25 HOH HOH . I 9 HOH A 50 750 137 HOH HOH . I 9 HOH A 51 751 55 HOH HOH . I 9 HOH A 52 752 46 HOH HOH . I 9 HOH A 53 753 29 HOH HOH . I 9 HOH A 54 754 8 HOH HOH . I 9 HOH A 55 755 39 HOH HOH . I 9 HOH A 56 756 5 HOH HOH . I 9 HOH A 57 757 120 HOH HOH . I 9 HOH A 58 758 28 HOH HOH . I 9 HOH A 59 759 24 HOH HOH . I 9 HOH A 60 760 67 HOH HOH . I 9 HOH A 61 761 148 HOH HOH . I 9 HOH A 62 762 23 HOH HOH . I 9 HOH A 63 763 32 HOH HOH . I 9 HOH A 64 764 147 HOH HOH . I 9 HOH A 65 765 138 HOH HOH . I 9 HOH A 66 766 132 HOH HOH . I 9 HOH A 67 767 113 HOH HOH . I 9 HOH A 68 768 26 HOH HOH . I 9 HOH A 69 769 11 HOH HOH . I 9 HOH A 70 770 9 HOH HOH . I 9 HOH A 71 771 6 HOH HOH . I 9 HOH A 72 772 15 HOH HOH . I 9 HOH A 73 773 108 HOH HOH . I 9 HOH A 74 774 105 HOH HOH . I 9 HOH A 75 775 61 HOH HOH . I 9 HOH A 76 776 33 HOH HOH . I 9 HOH A 77 777 94 HOH HOH . I 9 HOH A 78 778 69 HOH HOH . I 9 HOH A 79 779 74 HOH HOH . I 9 HOH A 80 780 127 HOH HOH . I 9 HOH A 81 781 56 HOH HOH . I 9 HOH A 82 782 20 HOH HOH . I 9 HOH A 83 783 136 HOH HOH . I 9 HOH A 84 784 21 HOH HOH . I 9 HOH A 85 785 90 HOH HOH . I 9 HOH A 86 786 64 HOH HOH . I 9 HOH A 87 787 142 HOH HOH . I 9 HOH A 88 788 118 HOH HOH . I 9 HOH A 89 789 82 HOH HOH . I 9 HOH A 90 790 34 HOH HOH . I 9 HOH A 91 791 129 HOH HOH . I 9 HOH A 92 792 114 HOH HOH . I 9 HOH A 93 793 40 HOH HOH . I 9 HOH A 94 794 45 HOH HOH . I 9 HOH A 95 795 48 HOH HOH . I 9 HOH A 96 796 116 HOH HOH . I 9 HOH A 97 797 65 HOH HOH . I 9 HOH A 98 798 98 HOH HOH . I 9 HOH A 99 799 62 HOH HOH . I 9 HOH A 100 800 27 HOH HOH . I 9 HOH A 101 801 50 HOH HOH . I 9 HOH A 102 802 93 HOH HOH . I 9 HOH A 103 803 22 HOH HOH . I 9 HOH A 104 804 71 HOH HOH . I 9 HOH A 105 805 49 HOH HOH . I 9 HOH A 106 806 140 HOH HOH . I 9 HOH A 107 807 149 HOH HOH . I 9 HOH A 108 808 101 HOH HOH . I 9 HOH A 109 809 124 HOH HOH . I 9 HOH A 110 810 60 HOH HOH . I 9 HOH A 111 811 139 HOH HOH . I 9 HOH A 112 812 109 HOH HOH . I 9 HOH A 113 813 131 HOH HOH . I 9 HOH A 114 814 123 HOH HOH . J 9 HOH C 1 601 99 HOH HOH . J 9 HOH C 2 602 150 HOH HOH . J 9 HOH C 3 603 153 HOH HOH . J 9 HOH C 4 604 146 HOH HOH . J 9 HOH C 5 605 141 HOH HOH . J 9 HOH C 6 606 44 HOH HOH . J 9 HOH C 7 607 47 HOH HOH . J 9 HOH C 8 608 3 HOH HOH . J 9 HOH C 9 609 133 HOH HOH . J 9 HOH C 10 610 110 HOH HOH . J 9 HOH C 11 611 119 HOH HOH . J 9 HOH C 12 612 70 HOH HOH . J 9 HOH C 13 613 111 HOH HOH . J 9 HOH C 14 614 57 HOH HOH . J 9 HOH C 15 615 7 HOH HOH . J 9 HOH C 16 616 97 HOH HOH . J 9 HOH C 17 617 10 HOH HOH . J 9 HOH C 18 618 122 HOH HOH . J 9 HOH C 19 619 89 HOH HOH . J 9 HOH C 20 620 102 HOH HOH . J 9 HOH C 21 621 42 HOH HOH . J 9 HOH C 22 622 63 HOH HOH . J 9 HOH C 23 623 84 HOH HOH . J 9 HOH C 24 624 73 HOH HOH . J 9 HOH C 25 625 68 HOH HOH . J 9 HOH C 26 626 155 HOH HOH . J 9 HOH C 27 627 115 HOH HOH . J 9 HOH C 28 628 52 HOH HOH . J 9 HOH C 29 629 72 HOH HOH . J 9 HOH C 30 630 134 HOH HOH . J 9 HOH C 31 631 96 HOH HOH . J 9 HOH C 32 632 130 HOH HOH . J 9 HOH C 33 633 75 HOH HOH . J 9 HOH C 34 634 36 HOH HOH . J 9 HOH C 35 635 154 HOH HOH . J 9 HOH C 36 636 104 HOH HOH . J 9 HOH C 37 637 58 HOH HOH . J 9 HOH C 38 638 35 HOH HOH . J 9 HOH C 39 639 78 HOH HOH . J 9 HOH C 40 640 152 HOH HOH . J 9 HOH C 41 641 112 HOH HOH . J 9 HOH C 42 642 100 HOH HOH . J 9 HOH C 43 643 76 HOH HOH . J 9 HOH C 44 644 53 HOH HOH . K 9 HOH P 1 401 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 -8.053 3.47 -30.078 1 73.43 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . E 5 -6.622 3.005 -30.092 1 73.47 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . E 5 -8.223 4.967 -29.943 1 73.52 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . E 5 -8.853 3.014 -31.282 1 73.1 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . E 5 -8.718 2.87 -28.761 1 72.93 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . E 5 -8.908 3.515 -27.317 1 71.88 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . E 5 -7.987 4.644 -27.108 1 71.79 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . E 5 -8.785 2.436 -26.243 1 71.2 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . E 5 -10.403 4.038 -27.482 1 72.35 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . E 5 -11.49 4.832 -26.633 1 72.11 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . E 5 -11.496 6.24 -27.076 1 71.7 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . E 5 -11.183 4.676 -25.145 1 72.47 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . E 5 -12.789 3.921 -26.949 1 72.02 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . E 5 -13.977 4.474 -27.543 1 71.45 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . E 5 -15.134 4.211 -26.608 1 71.17 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . E 5 -14.851 4.71 -25.28 1 70.85 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . E 5 -16.46 4.85 -27.003 1 71.68 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . E 5 -17.514 4.011 -26.546 1 72.48 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . E 5 -16.416 6.198 -26.273 1 71.61 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . E 5 -17.726 6.698 -26.013 1 72.41 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . E 5 -15.685 5.816 -24.979 1 70.37 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . E 5 -14.865 6.896 -24.379 1 68.66 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . E 5 -13.731 7.497 -24.871 1 67.96 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . E 5 -13.203 8.38 -24.05 1 67.36 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . E 5 -14.047 8.362 -22.947 1 67.24 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . E 5 -14.002 9.065 -21.688 1 67.04 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . E 5 -13.165 9.868 -21.299 1 66.74 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . E 5 -15.063 8.738 -20.87 1 67.37 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . E 5 -16.05 7.852 -21.169 1 66.9 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . E 5 -16.946 7.612 -20.217 1 66.42 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . E 5 -16.112 7.185 -22.318 1 67.18 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . E 5 -15.087 7.469 -23.147 1 67.64 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #