data_7Z0P
#
_model_server_result.job_id            BzLpx2oOoh_wsUczuz4dDw 
_model_server_result.datetime_utc      '2024-11-21 08:44:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7Z0P 
#
_exptl.entry_id    7Z0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              564.717 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},2~{S},5~{S})-3-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-~{N}-[(2~{S},3~{R})-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.335 
_cell.angle_gamma         90 
_cell.entry_id            7Z0P 
_cell.length_a            113.716 
_cell.length_b            51.667 
_cell.length_c            45.451 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -10.483008 0 44.225557 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 AAA CYS 145 1_555 B C18 I8H . AAA I8H 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
metalc ? metalc1 A OD2 ASP 187 AAA ASP 187 1_555 C NA NA . AAA NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
#
_chem_comp.formula           'C28 H48 N6 O6' 
_chem_comp.formula_weight    564.717 
_chem_comp.id                I8H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},2~{S},5~{S})-3-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-~{N}-[(2~{S},3~{R})-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 I8H sing 152 n n 
C2 C26 I8H sing 153 n n 
C2 C1 I8H sing 154 n n 
C3 N1 I8H sing 155 n n 
C12 C8 I8H sing 156 n n 
C11 C8 I8H sing 157 n n 
O3 C13 I8H doub 158 n n 
C15 C14 I8H sing 159 n n 
C26 C28 I8H sing 160 n n 
C26 C1 I8H sing 161 n n 
C26 C27 I8H sing 162 n n 
C8 C7 I8H sing 163 n n 
C8 C10 I8H sing 164 n n 
C7 N2 I8H sing 165 n n 
C7 C5 I8H sing 166 n n 
C13 N2 I8H sing 167 n n 
C13 N4 I8H sing 168 n n 
O1 C6 I8H doub 169 n n 
C1 C4 I8H sing 170 n n 
N1 C5 I8H sing 171 n n 
N1 C4 I8H sing 172 n n 
N4 C14 I8H sing 173 n n 
C17 C14 I8H sing 174 n n 
C14 C16 I8H sing 175 n n 
C5 O2 I8H doub 176 n n 
C25 N5 I8H sing 177 n n 
C4 C6 I8H sing 178 n n 
C6 N3 I8H sing 179 n n 
O5 C18 I8H sing 180 n n 
N5 C19 I8H sing 181 n n 
N3 C9 I8H sing 182 n n 
C24 C23 I8H sing 183 n n 
C24 C21 I8H sing 184 n n 
C9 C18 I8H sing 185 n n 
C9 C20 I8H sing 186 n n 
C18 C19 I8H sing 187 n n 
C19 O4 I8H doub 188 n n 
C23 N6 I8H sing 189 n n 
C21 C20 I8H sing 190 n n 
C21 C22 I8H sing 191 n n 
N6 C22 I8H sing 192 n n 
C22 O6 I8H doub 193 n n 
N3 H1 I8H sing 194 n n 
C4 H2 I8H sing 195 n n 
C7 H3 I8H sing 196 n n 
C10 H4 I8H sing 197 n n 
C10 H5 I8H sing 198 n n 
C10 H6 I8H sing 199 n n 
C15 H7 I8H sing 200 n n 
C15 H8 I8H sing 201 n n 
C15 H9 I8H sing 202 n n 
C17 H10 I8H sing 203 n n 
C17 H11 I8H sing 204 n n 
C17 H12 I8H sing 205 n n 
C20 H13 I8H sing 206 n n 
C20 H14 I8H sing 207 n n 
C21 H15 I8H sing 208 n n 
C24 H16 I8H sing 209 n n 
C24 H17 I8H sing 210 n n 
C28 H18 I8H sing 211 n n 
C28 H19 I8H sing 212 n n 
C28 H20 I8H sing 213 n n 
C1 H21 I8H sing 214 n n 
C2 H22 I8H sing 215 n n 
C3 H23 I8H sing 216 n n 
C3 H24 I8H sing 217 n n 
N2 H25 I8H sing 218 n n 
C9 H26 I8H sing 219 n n 
C11 H27 I8H sing 220 n n 
C11 H28 I8H sing 221 n n 
C11 H29 I8H sing 222 n n 
C12 H30 I8H sing 223 n n 
C12 H31 I8H sing 224 n n 
C12 H32 I8H sing 225 n n 
N4 H33 I8H sing 226 n n 
C16 H34 I8H sing 227 n n 
C16 H35 I8H sing 228 n n 
C16 H36 I8H sing 229 n n 
C18 H37 I8H sing 230 n n 
N5 H38 I8H sing 231 n n 
N6 H39 I8H sing 232 n n 
C23 H40 I8H sing 233 n n 
C23 H41 I8H sing 234 n n 
O5 H42 I8H sing 235 n n 
C25 H43 I8H sing 236 n n 
C25 H44 I8H sing 237 n n 
C25 H45 I8H sing 238 n n 
C27 H46 I8H sing 239 n n 
C27 H47 I8H sing 240 n n 
C27 H48 I8H sing 241 n n 
#
_atom_sites.entry_id                     7Z0P 
_atom_sites.fract_transf_matrix[1][1]    0.008794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002084 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 I8H AAA 1 401 401 I8H LIG . 
C 3 NA AAA 1 402 1 NA NA . 
D 4 HOH AAA 1 501 21 HOH HOH . 
D 4 HOH AAA 2 502 26 HOH HOH . 
D 4 HOH AAA 3 503 24 HOH HOH . 
D 4 HOH AAA 4 504 30 HOH HOH . 
D 4 HOH AAA 5 505 27 HOH HOH . 
D 4 HOH AAA 6 506 23 HOH HOH . 
D 4 HOH AAA 7 507 28 HOH HOH . 
D 4 HOH AAA 8 508 39 HOH HOH . 
D 4 HOH AAA 9 509 37 HOH HOH . 
D 4 HOH AAA 10 510 3 HOH HOH . 
D 4 HOH AAA 11 511 35 HOH HOH . 
D 4 HOH AAA 12 512 43 HOH HOH . 
D 4 HOH AAA 13 513 32 HOH HOH . 
D 4 HOH AAA 14 514 25 HOH HOH . 
D 4 HOH AAA 15 515 34 HOH HOH . 
D 4 HOH AAA 16 516 36 HOH HOH . 
D 4 HOH AAA 17 517 4 HOH HOH . 
D 4 HOH AAA 18 518 1 HOH HOH . 
D 4 HOH AAA 19 519 13 HOH HOH . 
D 4 HOH AAA 20 520 19 HOH HOH . 
D 4 HOH AAA 21 521 10 HOH HOH . 
D 4 HOH AAA 22 522 22 HOH HOH . 
D 4 HOH AAA 23 523 18 HOH HOH . 
D 4 HOH AAA 24 524 40 HOH HOH . 
D 4 HOH AAA 25 525 16 HOH HOH . 
D 4 HOH AAA 26 526 20 HOH HOH . 
D 4 HOH AAA 27 527 17 HOH HOH . 
D 4 HOH AAA 28 528 33 HOH HOH . 
D 4 HOH AAA 29 529 44 HOH HOH . 
D 4 HOH AAA 30 530 46 HOH HOH . 
D 4 HOH AAA 31 531 31 HOH HOH . 
D 4 HOH AAA 32 532 38 HOH HOH . 
D 4 HOH AAA 33 533 42 HOH HOH . 
D 4 HOH AAA 34 534 14 HOH HOH . 
D 4 HOH AAA 35 535 41 HOH HOH . 
D 4 HOH AAA 36 536 15 HOH HOH . 
D 4 HOH AAA 37 537 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 I8H . . . B 2 -15.697 1.18 -0.776 1 42.19 0 N1 I8H 401 AAA 1 
HETATM 2 N N3 I8H . . . B 2 -14.046 -1.021 1.386 1 39.62 0 N3 I8H 401 AAA 1 
HETATM 3 C C4 I8H . . . B 2 -15.791 -0.057 -0.003 1 40.67 0 C4 I8H 401 AAA 1 
HETATM 4 C C5 I8H . . . B 2 -15.278 2.283 -0.133 1 41.9 0 C5 I8H 401 AAA 1 
HETATM 5 C C6 I8H . . . B 2 -14.419 -0.705 0.142 1 39.75 0 C6 I8H 401 AAA 1 
HETATM 6 C C7 I8H . . . B 2 -15.097 3.575 -0.942 1 39.04 0 C7 I8H 401 AAA 1 
HETATM 7 C C8 I8H . . . B 2 -13.636 3.943 -1.185 1 36.16 0 C8 I8H 401 AAA 1 
HETATM 8 C C10 I8H . . . B 2 -12.923 4.185 0.143 1 34.25 0 C10 I8H 401 AAA 1 
HETATM 9 C C13 I8H . . . B 2 -16.81 5.361 -0.872 1 42.97 0 C13 I8H 401 AAA 1 
HETATM 10 C C15 I8H . . . B 2 -18.589 7.528 -1.602 1 42.47 0 C15 I8H 401 AAA 1 
HETATM 11 C C17 I8H . . . B 2 -19.715 5.97 -0.182 1 43.82 0 C17 I8H 401 AAA 1 
HETATM 12 C C20 I8H . . . B 2 -12.154 -0.934 2.931 1 34.57 0 C20 I8H 401 AAA 1 
HETATM 13 C C21 I8H . . . B 2 -11.739 0.492 2.605 1 34.79 0 C21 I8H 401 AAA 1 
HETATM 14 C C22 I8H . . . B 2 -11.354 1.29 3.832 1 34.99 0 C22 I8H 401 AAA 1 
HETATM 15 C C24 I8H . . . B 2 -10.526 0.676 1.698 1 34.74 0 C24 I8H 401 AAA 1 
HETATM 16 C C26 I8H . . . B 2 -18.096 -0.444 -1.326 1 41.96 0 C26 I8H 401 AAA 1 
HETATM 17 C C28 I8H . . . B 2 -18.972 -1.682 -1.291 1 41.85 0 C28 I8H 401 AAA 1 
HETATM 18 C C1 I8H . . . B 2 -16.732 -0.923 -0.832 1 41.96 0 C1 I8H 401 AAA 1 
HETATM 19 C C2 I8H . . . B 2 -16.859 -0.287 -2.196 1 42.19 0 C2 I8H 401 AAA 1 
HETATM 20 C C3 I8H . . . B 2 -16.088 1.019 -2.184 1 42.95 0 C3 I8H 401 AAA 1 
HETATM 21 N N2 I8H . . . B 2 -15.773 4.7 -0.305 1 42.68 0 N2 I8H 401 AAA 1 
HETATM 22 C C9 I8H . . . B 2 -12.755 -1.643 1.721 1 38.38 0 C9 I8H 401 AAA 1 
HETATM 23 O O1 I8H . . . B 2 -13.708 -0.888 -0.842 1 43.78 0 O1 I8H 401 AAA 1 
HETATM 24 O O2 I8H . . . B 2 -15.041 2.227 1.076 1 41.85 0 O2 I8H 401 AAA 1 
HETATM 25 C C11 I8H . . . B 2 -12.888 2.83 -1.931 1 39.28 0 C11 I8H 401 AAA 1 
HETATM 26 C C12 I8H . . . B 2 -13.574 5.224 -2.025 1 36.47 0 C12 I8H 401 AAA 1 
HETATM 27 N N4 I8H . . . B 2 -17.22 6.481 -0.223 1 43.51 0 N4 I8H 401 AAA 1 
HETATM 28 C C14 I8H . . . B 2 -18.599 6.993 -0.172 1 42.95 0 C14 I8H 401 AAA 1 
HETATM 29 O O3 I8H . . . B 2 -17.336 4.959 -1.925 1 43.52 0 O3 I8H 401 AAA 1 
HETATM 30 C C16 I8H . . . B 2 -18.931 8.238 0.618 1 37.31 0 C16 I8H 401 AAA 1 
HETATM 31 C C18 I8H . . . B 2 -12.934 -3.167 1.926 1 40.92 0 C18 I8H 401 AAA 1 
HETATM 32 C C19 I8H . . . B 2 -11.627 -3.933 2.121 1 41.76 0 C19 I8H 401 AAA 1 
HETATM 33 N N5 I8H . . . B 2 -11.326 -4.907 1.281 1 44.44 0 N5 I8H 401 AAA 1 
HETATM 34 N N6 I8H . . . B 2 -10.385 2.147 3.503 1 34.62 0 N6 I8H 401 AAA 1 
HETATM 35 C C23 I8H . . . B 2 -9.926 2.019 2.126 1 32.64 0 C23 I8H 401 AAA 1 
HETATM 36 O O4 I8H . . . B 2 -10.88 -3.606 3.036 1 47.37 0 O4 I8H 401 AAA 1 
HETATM 37 O O5 I8H . . . B 2 -13.653 -3.697 0.818 1 37.56 0 O5 I8H 401 AAA 1 
HETATM 38 O O6 I8H . . . B 2 -11.874 1.18 4.944 1 35.37 0 O6 I8H 401 AAA 1 
HETATM 39 C C25 I8H . . . B 2 -10.949 -4.665 -0.098 1 47.74 0 C25 I8H 401 AAA 1 
HETATM 40 C C27 I8H . . . B 2 -18.612 0.64 -0.401 1 42.72 0 C27 I8H 401 AAA 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#