data_7Z0Q # _model_server_result.job_id hW66EBADg9iLgmXKVBcuaQ _model_server_result.datetime_utc '2025-01-10 15:16:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 7Z0Q # _exptl.entry_id 7Z0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z0Q _cell.length_a 134.094 _cell.length_b 134.094 _cell.length_c 72.178 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 C CYS 107 1_555 A SG CYS 163 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 14 D CYS 15 1_555 B SG CYS 78 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 B SG CYS 116 D CYS 117 1_555 B SG CYS 172 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7Z0Q _atom_sites.fract_transf_matrix[1][1] 0.007457 _atom_sites.fract_transf_matrix[1][2] 0.004306 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO C 1 301 301 EDO EDO . E 4 EDO C 1 302 302 EDO EDO . F 4 EDO C 1 303 303 EDO EDO . G 4 EDO C 1 304 304 EDO EDO . H 4 EDO C 1 305 305 EDO EDO . I 4 EDO C 1 306 307 EDO EDO . J 4 EDO D 1 201 306 EDO EDO . K 4 EDO D 1 202 308 EDO EDO . L 4 EDO G 1 101 309 EDO EDO . M 5 HOH C 1 401 7 HOH HOH . M 5 HOH C 2 402 63 HOH HOH . M 5 HOH C 3 403 2 HOH HOH . M 5 HOH C 4 404 13 HOH HOH . M 5 HOH C 5 405 11 HOH HOH . M 5 HOH C 6 406 99 HOH HOH . M 5 HOH C 7 407 93 HOH HOH . M 5 HOH C 8 408 1 HOH HOH . M 5 HOH C 9 409 98 HOH HOH . M 5 HOH C 10 410 9 HOH HOH . M 5 HOH C 11 411 4 HOH HOH . M 5 HOH C 12 412 51 HOH HOH . M 5 HOH C 13 413 84 HOH HOH . M 5 HOH C 14 414 71 HOH HOH . M 5 HOH C 15 415 69 HOH HOH . M 5 HOH C 16 416 67 HOH HOH . M 5 HOH C 17 417 61 HOH HOH . M 5 HOH C 18 418 116 HOH HOH . M 5 HOH C 19 419 81 HOH HOH . M 5 HOH C 20 420 12 HOH HOH . M 5 HOH C 21 421 76 HOH HOH . M 5 HOH C 22 422 46 HOH HOH . M 5 HOH C 23 423 21 HOH HOH . M 5 HOH C 24 424 57 HOH HOH . M 5 HOH C 25 425 101 HOH HOH . M 5 HOH C 26 426 37 HOH HOH . M 5 HOH C 27 427 20 HOH HOH . M 5 HOH C 28 428 41 HOH HOH . M 5 HOH C 29 429 40 HOH HOH . M 5 HOH C 30 430 65 HOH HOH . M 5 HOH C 31 431 60 HOH HOH . M 5 HOH C 32 432 122 HOH HOH . M 5 HOH C 33 433 35 HOH HOH . M 5 HOH C 34 434 75 HOH HOH . M 5 HOH C 35 435 45 HOH HOH . M 5 HOH C 36 436 87 HOH HOH . M 5 HOH C 37 437 90 HOH HOH . M 5 HOH C 38 438 47 HOH HOH . M 5 HOH C 39 439 33 HOH HOH . M 5 HOH C 40 440 25 HOH HOH . M 5 HOH C 41 441 42 HOH HOH . M 5 HOH C 42 442 36 HOH HOH . M 5 HOH C 43 443 95 HOH HOH . M 5 HOH C 44 444 70 HOH HOH . M 5 HOH C 45 445 119 HOH HOH . M 5 HOH C 46 446 52 HOH HOH . M 5 HOH C 47 447 121 HOH HOH . M 5 HOH C 48 448 125 HOH HOH . M 5 HOH C 49 449 92 HOH HOH . M 5 HOH C 50 450 77 HOH HOH . M 5 HOH C 51 451 26 HOH HOH . M 5 HOH C 52 452 72 HOH HOH . M 5 HOH C 53 453 115 HOH HOH . M 5 HOH C 54 454 109 HOH HOH . M 5 HOH C 55 455 111 HOH HOH . M 5 HOH C 56 456 31 HOH HOH . M 5 HOH C 57 457 86 HOH HOH . M 5 HOH C 58 458 83 HOH HOH . M 5 HOH C 59 459 19 HOH HOH . M 5 HOH C 60 460 105 HOH HOH . M 5 HOH C 61 461 14 HOH HOH . M 5 HOH C 62 462 110 HOH HOH . M 5 HOH C 63 463 100 HOH HOH . M 5 HOH C 64 464 85 HOH HOH . M 5 HOH C 65 465 39 HOH HOH . M 5 HOH C 66 466 29 HOH HOH . M 5 HOH C 67 467 27 HOH HOH . M 5 HOH C 68 468 97 HOH HOH . M 5 HOH C 69 469 103 HOH HOH . N 5 HOH D 1 301 3 HOH HOH . N 5 HOH D 2 302 16 HOH HOH . N 5 HOH D 3 303 59 HOH HOH . N 5 HOH D 4 304 117 HOH HOH . N 5 HOH D 5 305 8 HOH HOH . N 5 HOH D 6 306 58 HOH HOH . N 5 HOH D 7 307 24 HOH HOH . N 5 HOH D 8 308 43 HOH HOH . N 5 HOH D 9 309 49 HOH HOH . N 5 HOH D 10 310 114 HOH HOH . N 5 HOH D 11 311 44 HOH HOH . N 5 HOH D 12 312 48 HOH HOH . N 5 HOH D 13 313 74 HOH HOH . N 5 HOH D 14 314 123 HOH HOH . N 5 HOH D 15 315 50 HOH HOH . N 5 HOH D 16 316 23 HOH HOH . N 5 HOH D 17 317 5 HOH HOH . N 5 HOH D 18 318 120 HOH HOH . N 5 HOH D 19 319 113 HOH HOH . N 5 HOH D 20 320 107 HOH HOH . N 5 HOH D 21 321 62 HOH HOH . N 5 HOH D 22 322 106 HOH HOH . N 5 HOH D 23 323 6 HOH HOH . N 5 HOH D 24 324 124 HOH HOH . N 5 HOH D 25 325 32 HOH HOH . N 5 HOH D 26 326 108 HOH HOH . N 5 HOH D 27 327 30 HOH HOH . N 5 HOH D 28 328 66 HOH HOH . N 5 HOH D 29 329 88 HOH HOH . N 5 HOH D 30 330 18 HOH HOH . N 5 HOH D 31 331 10 HOH HOH . N 5 HOH D 32 332 34 HOH HOH . N 5 HOH D 33 333 89 HOH HOH . N 5 HOH D 34 334 118 HOH HOH . N 5 HOH D 35 335 91 HOH HOH . N 5 HOH D 36 336 38 HOH HOH . N 5 HOH D 37 337 17 HOH HOH . N 5 HOH D 38 338 15 HOH HOH . N 5 HOH D 39 339 79 HOH HOH . N 5 HOH D 40 340 80 HOH HOH . N 5 HOH D 41 341 112 HOH HOH . N 5 HOH D 42 342 96 HOH HOH . N 5 HOH D 43 343 28 HOH HOH . N 5 HOH D 44 344 94 HOH HOH . N 5 HOH D 45 345 22 HOH HOH . N 5 HOH D 46 346 104 HOH HOH . N 5 HOH D 47 347 82 HOH HOH . O 5 HOH G 1 201 64 HOH HOH . O 5 HOH G 2 202 78 HOH HOH . O 5 HOH G 3 203 55 HOH HOH . O 5 HOH G 4 204 54 HOH HOH . O 5 HOH G 5 205 53 HOH HOH . O 5 HOH G 6 206 56 HOH HOH . O 5 HOH G 7 207 73 HOH HOH . O 5 HOH G 8 208 68 HOH HOH . O 5 HOH G 9 209 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -19.724 17.18 4.24 1 77.49 ? C1 EDO 302 C 1 HETATM 2 O O1 EDO . . . E 4 -20.377 16.135 4.95 1 76.93 ? O1 EDO 302 C 1 HETATM 3 C C2 EDO . . . E 4 -20.781 18.096 3.541 1 79.77 ? C2 EDO 302 C 1 HETATM 4 O O2 EDO . . . E 4 -21.506 18.875 4.497 1 80.36 ? O2 EDO 302 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #