data_7Z10 # _model_server_result.job_id DXyxjTKTFm3xrMge-QPcgA _model_server_result.datetime_utc '2024-11-04 23:12:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":602}' # _entry.id 7Z10 # _exptl.entry_id 7Z10 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 852.837 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEME-A _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z10 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 K N N ? 11 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 a HIS 62 1_555 K FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 A ND1 HIS 241 a HIS 241 1_555 J CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A NE2 HIS 290 a HIS 290 1_555 J CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 A NE2 HIS 291 a HIS 291 1_555 J CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc5 A OD2 ASP 369 a ASP 369 1_555 M MG MG . a MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc6 A NE2 HIS 376 a HIS 376 1_555 L FE HEA . a HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc7 A NE2 HIS 378 a HIS 378 1_555 K FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc8 M MG MG . a MG 604 1_555 B OE1 GLU 208 b GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc9 B ND1 HIS 171 b HIS 186 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 B SG CYS 206 b CYS 221 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc11 B SG CYS 206 b CYS 221 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc12 B O GLU 208 b GLU 223 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc13 B SG CYS 210 b CYS 225 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc14 B SG CYS 210 b CYS 225 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc15 B ND1 HIS 214 b HIS 229 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc16 B SD MET 217 b MET 232 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 D SG CYS 83 d CYS 111 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc18 D NE2 HIS 91 d HIS 119 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc19 D SG CYS 106 d CYS 134 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc20 D SG CYS 109 d CYS 137 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? # _chem_comp.formula 'C49 H56 Fe N4 O6' _chem_comp.formula_weight 852.837 _chem_comp.id HEA _chem_comp.mon_nstd_flag . _chem_comp.name HEME-A _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEA sing 130 n n FE NB HEA sing 131 n n FE NC HEA sing 132 n n FE ND HEA sing 133 n n CHA C1A HEA doub 134 n n CHA C4D HEA sing 135 n n CHA HHA HEA sing 136 n n CHB C4A HEA doub 137 n n CHB C1B HEA sing 138 n n CHB HHB HEA sing 139 n n CHC C4B HEA doub 140 n n CHC C1C HEA sing 141 n n CHC HHC HEA sing 142 n n CHD C4C HEA sing 143 n n CHD C1D HEA doub 144 n n CHD HHD HEA sing 145 n n NA C1A HEA sing 146 n y NA C4A HEA sing 147 n y C1A C2A HEA sing 148 n y C2A C3A HEA doub 149 n y C2A CAA HEA sing 150 n n C3A C4A HEA sing 151 n y C3A CMA HEA sing 152 n n CMA OMA HEA doub 153 n n CMA HMA HEA sing 154 n n CAA CBA HEA sing 155 n n CAA HAA1 HEA sing 156 n n CAA HAA2 HEA sing 157 n n CBA CGA HEA sing 158 n n CBA HBA1 HEA sing 159 n n CBA HBA2 HEA sing 160 n n CGA O1A HEA doub 161 n n CGA O2A HEA sing 162 n n O2A H2A HEA sing 163 n n NB C1B HEA doub 164 n n NB C4B HEA sing 165 n n C1B C2B HEA sing 166 n n C2B C3B HEA doub 167 n n C2B CMB HEA sing 168 n n C3B C4B HEA sing 169 n n C3B C11 HEA sing 170 n n CMB HMB1 HEA sing 171 n n CMB HMB2 HEA sing 172 n n CMB HMB3 HEA sing 173 n n NC C1C HEA sing 174 n y NC C4C HEA sing 175 n y C1C C2C HEA doub 176 n y C2C C3C HEA sing 177 n y C2C CMC HEA sing 178 n n C3C C4C HEA doub 179 n y C3C CAC HEA sing 180 n n CMC HMC1 HEA sing 181 n n CMC HMC2 HEA sing 182 n n CMC HMC3 HEA sing 183 n n CAC CBC HEA doub 184 n n CAC HAC HEA sing 185 n n CBC HBC1 HEA sing 186 n n CBC HBC2 HEA sing 187 n n ND C1D HEA sing 188 n n ND C4D HEA doub 189 n n C1D C2D HEA sing 190 n n C2D C3D HEA doub 191 n n C2D CMD HEA sing 192 n n C3D C4D HEA sing 193 n n C3D CAD HEA sing 194 n n CMD HMD1 HEA sing 195 n n CMD HMD2 HEA sing 196 n n CMD HMD3 HEA sing 197 n n CAD CBD HEA sing 198 n n CAD HAD1 HEA sing 199 n n CAD HAD2 HEA sing 200 n n CBD CGD HEA sing 201 n n CBD HBD1 HEA sing 202 n n CBD HBD2 HEA sing 203 n n CGD O1D HEA doub 204 n n CGD O2D HEA sing 205 n n O2D H2D HEA sing 206 n n C11 O11 HEA sing 207 n n C11 C12 HEA sing 208 n n C11 H11 HEA sing 209 n n O11 HO1 HEA sing 210 n n C12 C13 HEA sing 211 n n C12 H121 HEA sing 212 n n C12 H122 HEA sing 213 n n C13 C14 HEA sing 214 n n C13 H131 HEA sing 215 n n C13 H132 HEA sing 216 n n C14 C15 HEA doub 217 e n C14 H14 HEA sing 218 n n C15 C16 HEA sing 219 n n C15 C26 HEA sing 220 n n C16 C17 HEA sing 221 n n C16 H161 HEA sing 222 n n C16 H162 HEA sing 223 n n C17 C18 HEA sing 224 n n C17 H171 HEA sing 225 n n C17 H172 HEA sing 226 n n C18 C19 HEA doub 227 e n C18 H18 HEA sing 228 n n C19 C20 HEA sing 229 n n C19 C27 HEA sing 230 n n C20 C21 HEA sing 231 n n C20 H201 HEA sing 232 n n C20 H202 HEA sing 233 n n C21 C22 HEA sing 234 n n C21 H211 HEA sing 235 n n C21 H212 HEA sing 236 n n C22 C23 HEA doub 237 n n C22 H22 HEA sing 238 n n C23 C24 HEA sing 239 n n C23 C25 HEA sing 240 n n C24 H241 HEA sing 241 n n C24 H242 HEA sing 242 n n C24 H243 HEA sing 243 n n C25 H251 HEA sing 244 n n C25 H252 HEA sing 245 n n C25 H253 HEA sing 246 n n C26 H261 HEA sing 247 n n C26 H262 HEA sing 248 n n C26 H263 HEA sing 249 n n C27 H271 HEA sing 250 n n C27 H272 HEA sing 251 n n C27 H273 HEA sing 252 n n # _atom_sites.entry_id 7Z10 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 CU a 1 601 601 CU CU . K 11 HEA a 1 602 602 HEA HEA . L 11 HEA a 1 603 603 HEA HEA . M 12 MG a 1 604 604 MG MG . N 13 PEF a 1 605 605 PEF PEF . O 13 PEF a 1 606 606 PEF PEF . P 14 CUA b 1 301 301 CUA CUA . Q 13 PEF c 1 301 301 PEF PEF . R 15 ZN d 1 201 201 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEA . . . K 11 111.909 93.481 114.827 1 135.86 ? FE HEA 602 a 1 HETATM 2 C CHA HEA . . . K 11 110.49 93.05 117.899 1 135.86 ? CHA HEA 602 a 1 HETATM 3 C CHB HEA . . . K 11 114.443 91.337 115.394 1 135.86 ? CHB HEA 602 a 1 HETATM 4 C CHC HEA . . . K 11 112.64 93.401 111.446 1 135.86 ? CHC HEA 602 a 1 HETATM 5 C CHD HEA . . . K 11 110.028 96.317 114.322 1 135.86 ? CHD HEA 602 a 1 HETATM 6 N NA HEA . . . K 11 112.531 92.579 116.46 1 135.86 ? NA HEA 602 a 1 HETATM 7 C C1A HEA . . . K 11 111.502 92.12 117.388 1 135.86 ? C1A HEA 602 a 1 HETATM 8 C C2A HEA . . . K 11 111.616 90.701 117.821 1 135.86 ? C2A HEA 602 a 1 HETATM 9 C C3A HEA . . . K 11 112.79 90.227 117.069 1 135.86 ? C3A HEA 602 a 1 HETATM 10 C C4A HEA . . . K 11 113.279 91.356 116.265 1 135.86 ? C4A HEA 602 a 1 HETATM 11 C CMA HEA . . . K 11 113.371 88.868 117.058 1 135.86 ? CMA HEA 602 a 1 HETATM 12 O OMA HEA . . . K 11 113.646 88.336 116 1 135.86 ? OMA HEA 602 a 1 HETATM 13 C CAA HEA . . . K 11 110.718 89.958 118.782 1 135.86 ? CAA HEA 602 a 1 HETATM 14 C CBA HEA . . . K 11 111.516 89.432 119.971 1 135.86 ? CBA HEA 602 a 1 HETATM 15 C CGA HEA . . . K 11 111.016 89.971 121.284 1 135.86 ? CGA HEA 602 a 1 HETATM 16 O O1A HEA . . . K 11 111.711 90.831 121.86 1 135.86 ? O1A HEA 602 a 1 HETATM 17 O O2A HEA . . . K 11 109.943 89.537 121.752 1 135.86 ? O2A HEA 602 a 1 HETATM 18 N NB HEA . . . K 11 113.323 92.511 113.614 1 135.86 ? NB HEA 602 a 1 HETATM 19 C C1B HEA . . . K 11 114.289 91.672 113.988 1 135.86 ? C1B HEA 602 a 1 HETATM 20 C C2B HEA . . . K 11 115.152 91.126 112.924 1 135.86 ? C2B HEA 602 a 1 HETATM 21 C C3B HEA . . . K 11 114.6 91.752 111.728 1 135.86 ? C3B HEA 602 a 1 HETATM 22 C C4B HEA . . . K 11 113.495 92.571 112.284 1 135.86 ? C4B HEA 602 a 1 HETATM 23 C CMB HEA . . . K 11 116.306 90.173 113.05 1 135.86 ? CMB HEA 602 a 1 HETATM 24 N NC HEA . . . K 11 111.416 94.657 113.162 1 135.86 ? NC HEA 602 a 1 HETATM 25 C C1C HEA . . . K 11 111.798 94.509 111.883 1 135.86 ? C1C HEA 602 a 1 HETATM 26 C C2C HEA . . . K 11 111.304 95.502 110.905 1 135.86 ? C2C HEA 602 a 1 HETATM 27 C C3C HEA . . . K 11 110.513 96.369 111.785 1 135.86 ? C3C HEA 602 a 1 HETATM 28 C C4C HEA . . . K 11 110.662 95.768 113.123 1 135.86 ? C4C HEA 602 a 1 HETATM 29 C CMC HEA . . . K 11 111.605 95.52 109.432 1 135.86 ? CMC HEA 602 a 1 HETATM 30 C CAC HEA . . . K 11 109.725 97.592 111.512 1 135.86 ? CAC HEA 602 a 1 HETATM 31 C CBC HEA . . . K 11 109.337 97.962 110.309 1 135.86 ? CBC HEA 602 a 1 HETATM 32 N ND HEA . . . K 11 110.475 94.515 115.947 1 135.86 ? ND HEA 602 a 1 HETATM 33 C C1D HEA . . . K 11 109.81 95.625 115.597 1 135.86 ? C1D HEA 602 a 1 HETATM 34 C C2D HEA . . . K 11 108.853 96.132 116.591 1 135.86 ? C2D HEA 602 a 1 HETATM 35 C C3D HEA . . . K 11 108.983 95.176 117.697 1 135.86 ? C3D HEA 602 a 1 HETATM 36 C C4D HEA . . . K 11 110.01 94.235 117.175 1 135.86 ? C4D HEA 602 a 1 HETATM 37 C CMD HEA . . . K 11 107.967 97.336 116.462 1 135.86 ? CMD HEA 602 a 1 HETATM 38 C CAD HEA . . . K 11 108.199 95.17 118.985 1 135.86 ? CAD HEA 602 a 1 HETATM 39 C CBD HEA . . . K 11 109.031 95.228 120.251 1 135.86 ? CBD HEA 602 a 1 HETATM 40 C CGD HEA . . . K 11 108.36 94.311 121.24 1 135.86 ? CGD HEA 602 a 1 HETATM 41 O O1D HEA . . . K 11 108.463 94.575 122.451 1 135.86 ? O1D HEA 602 a 1 HETATM 42 O O2D HEA . . . K 11 107.72 93.328 120.809 1 135.86 ? O2D HEA 602 a 1 HETATM 43 C C11 HEA . . . K 11 115.088 91.587 110.349 1 135.86 ? C11 HEA 602 a 1 HETATM 44 O O11 HEA . . . K 11 114.042 91.518 109.38 1 135.86 ? O11 HEA 602 a 1 HETATM 45 C C12 HEA . . . K 11 115.964 92.79 110.047 1 135.86 ? C12 HEA 602 a 1 HETATM 46 C C13 HEA . . . K 11 116.428 92.721 108.605 1 135.86 ? C13 HEA 602 a 1 HETATM 47 C C14 HEA . . . K 11 115.715 93.8 107.841 1 135.86 ? C14 HEA 602 a 1 HETATM 48 C C15 HEA . . . K 11 116.219 94.33 106.728 1 135.86 ? C15 HEA 602 a 1 HETATM 49 C C16 HEA . . . K 11 115.418 95.405 106.046 1 135.86 ? C16 HEA 602 a 1 HETATM 50 C C17 HEA . . . K 11 116.233 96.183 105.027 1 135.86 ? C17 HEA 602 a 1 HETATM 51 C C18 HEA . . . K 11 116.876 97.355 105.713 1 135.86 ? C18 HEA 602 a 1 HETATM 52 C C19 HEA . . . K 11 116.579 98.619 105.403 1 135.86 ? C19 HEA 602 a 1 HETATM 53 C C20 HEA . . . K 11 115.561 98.953 104.349 1 135.86 ? C20 HEA 602 a 1 HETATM 54 C C21 HEA . . . K 11 116.104 100.08 103.49 1 135.86 ? C21 HEA 602 a 1 HETATM 55 C C22 HEA . . . K 11 114.967 100.78 102.788 1 135.86 ? C22 HEA 602 a 1 HETATM 56 C C23 HEA . . . K 11 115.195 101.836 102.002 1 135.86 ? C23 HEA 602 a 1 HETATM 57 C C24 HEA . . . K 11 114.067 102.518 101.31 1 135.86 ? C24 HEA 602 a 1 HETATM 58 C C25 HEA . . . K 11 116.577 102.351 101.783 1 135.86 ? C25 HEA 602 a 1 HETATM 59 C C26 HEA . . . K 11 117.523 93.841 106.177 1 135.86 ? C26 HEA 602 a 1 HETATM 60 C C27 HEA . . . K 11 117.274 99.724 106.132 1 135.86 ? C27 HEA 602 a 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 60 #