data_7Z10 # _model_server_result.job_id 7CreI489og_a2R69HKoPPQ _model_server_result.datetime_utc '2024-11-04 23:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":605}' # _entry.id 7Z10 # _exptl.entry_id 7Z10 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 691.959 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z10 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 N N N ? 13 O N N ? 13 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 a HIS 62 1_555 K FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 A ND1 HIS 241 a HIS 241 1_555 J CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A NE2 HIS 290 a HIS 290 1_555 J CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 A NE2 HIS 291 a HIS 291 1_555 J CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc5 A OD2 ASP 369 a ASP 369 1_555 M MG MG . a MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc6 A NE2 HIS 376 a HIS 376 1_555 L FE HEA . a HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc7 A NE2 HIS 378 a HIS 378 1_555 K FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc8 M MG MG . a MG 604 1_555 B OE1 GLU 208 b GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc9 B ND1 HIS 171 b HIS 186 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 B SG CYS 206 b CYS 221 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc11 B SG CYS 206 b CYS 221 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc12 B O GLU 208 b GLU 223 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc13 B SG CYS 210 b CYS 225 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc14 B SG CYS 210 b CYS 225 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc15 B ND1 HIS 214 b HIS 229 1_555 P CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc16 B SD MET 217 b MET 232 1_555 P CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 D SG CYS 83 d CYS 111 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc18 D NE2 HIS 91 d HIS 119 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc19 D SG CYS 106 d CYS 134 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc20 D SG CYS 109 d CYS 137 1_555 R ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id PEF _chem_comp.mon_nstd_flag . _chem_comp.name DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 PEF sing 359 n n C2 C3 PEF sing 360 n n C2 O2 PEF sing 361 n n C2 H21 PEF sing 362 n n C1 O3P PEF sing 363 n n C1 H11 PEF sing 364 n n C1 H12 PEF sing 365 n n N C5 PEF sing 366 n n N HN1 PEF sing 367 n n N HN2 PEF sing 368 n n C3 O3 PEF sing 369 n n C3 H31 PEF sing 370 n n C3 H32 PEF sing 371 n n C4 C5 PEF sing 372 n n C4 O4P PEF sing 373 n n C4 H41 PEF sing 374 n n C4 H42 PEF sing 375 n n C5 H51 PEF sing 376 n n C5 H52 PEF sing 377 n n C10 C11 PEF sing 378 n n C10 O4 PEF doub 379 n n C10 O2 PEF sing 380 n n C11 C12 PEF sing 381 n n C11 H112 PEF sing 382 n n C11 H111 PEF sing 383 n n C12 C13 PEF sing 384 n n C12 H122 PEF sing 385 n n C12 H121 PEF sing 386 n n C13 C14 PEF sing 387 n n C13 H132 PEF sing 388 n n C13 H131 PEF sing 389 n n C14 C15 PEF sing 390 n n C14 H142 PEF sing 391 n n C14 H141 PEF sing 392 n n C15 C16 PEF sing 393 n n C15 H152 PEF sing 394 n n C15 H151 PEF sing 395 n n C16 C17 PEF sing 396 n n C16 H162 PEF sing 397 n n C16 H161 PEF sing 398 n n C17 C18 PEF sing 399 n n C17 H172 PEF sing 400 n n C17 H171 PEF sing 401 n n C18 C19 PEF sing 402 n n C18 H182 PEF sing 403 n n C18 H181 PEF sing 404 n n C19 C20 PEF sing 405 n n C19 H192 PEF sing 406 n n C19 H191 PEF sing 407 n n C20 C21 PEF sing 408 n n C20 H202 PEF sing 409 n n C20 H201 PEF sing 410 n n C21 C22 PEF sing 411 n n C21 H212 PEF sing 412 n n C21 H211 PEF sing 413 n n C22 C23 PEF sing 414 n n C22 H222 PEF sing 415 n n C22 H221 PEF sing 416 n n C23 C24 PEF sing 417 n n C23 H232 PEF sing 418 n n C23 H231 PEF sing 419 n n C24 C25 PEF sing 420 n n C24 H242 PEF sing 421 n n C24 H241 PEF sing 422 n n C25 H252 PEF sing 423 n n C25 H251 PEF sing 424 n n C25 H253 PEF sing 425 n n C30 C31 PEF sing 426 n n C30 O5 PEF doub 427 n n C30 O3 PEF sing 428 n n C31 C32 PEF sing 429 n n C31 H312 PEF sing 430 n n C31 H311 PEF sing 431 n n C32 C33 PEF sing 432 n n C32 H322 PEF sing 433 n n C32 H321 PEF sing 434 n n C33 C34 PEF sing 435 n n C33 H332 PEF sing 436 n n C33 H331 PEF sing 437 n n C34 C35 PEF sing 438 n n C34 H342 PEF sing 439 n n C34 H341 PEF sing 440 n n C35 C36 PEF sing 441 n n C35 H352 PEF sing 442 n n C35 H351 PEF sing 443 n n C36 C37 PEF sing 444 n n C36 H362 PEF sing 445 n n C36 H361 PEF sing 446 n n C37 C38 PEF sing 447 n n C37 H372 PEF sing 448 n n C37 H371 PEF sing 449 n n C38 C39 PEF sing 450 n n C38 H382 PEF sing 451 n n C38 H381 PEF sing 452 n n C39 C40 PEF sing 453 n n C39 H392 PEF sing 454 n n C39 H391 PEF sing 455 n n C40 C41 PEF sing 456 n n C40 H402 PEF sing 457 n n C40 H401 PEF sing 458 n n C41 C42 PEF sing 459 n n C41 H412 PEF sing 460 n n C41 H411 PEF sing 461 n n C42 C43 PEF sing 462 n n C42 H422 PEF sing 463 n n C42 H421 PEF sing 464 n n C43 C44 PEF sing 465 n n C43 H432 PEF sing 466 n n C43 H431 PEF sing 467 n n C44 C45 PEF sing 468 n n C44 H442 PEF sing 469 n n C44 H441 PEF sing 470 n n C45 H452 PEF sing 471 n n C45 H451 PEF sing 472 n n C45 H453 PEF sing 473 n n O1P P PEF doub 474 n n O2P P PEF sing 475 n n O2P HOP2 PEF sing 476 n n O3P P PEF sing 477 n n O4P P PEF sing 478 n n # _atom_sites.entry_id 7Z10 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 CU a 1 601 601 CU CU . K 11 HEA a 1 602 602 HEA HEA . L 11 HEA a 1 603 603 HEA HEA . M 12 MG a 1 604 604 MG MG . N 13 PEF a 1 605 605 PEF PEF . O 13 PEF a 1 606 606 PEF PEF . P 14 CUA b 1 301 301 CUA CUA . Q 13 PEF c 1 301 301 PEF PEF . R 15 ZN d 1 201 201 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEF . . . N 13 102.894 128.585 109.849 1 144.66 ? C2 PEF 605 a 1 HETATM 2 C C1 PEF . . . N 13 103.852 129.008 108.759 1 144.66 ? C1 PEF 605 a 1 HETATM 3 N N PEF . . . N 13 102.555 131.598 104.239 1 144.66 ? N PEF 605 a 1 HETATM 4 C C3 PEF . . . N 13 101.579 128.107 109.263 1 144.66 ? C3 PEF 605 a 1 HETATM 5 C C4 PEF . . . N 13 103.936 129.663 103.928 1 144.66 ? C4 PEF 605 a 1 HETATM 6 C C5 PEF . . . N 13 102.858 130.533 103.309 1 144.66 ? C5 PEF 605 a 1 HETATM 7 C C10 PEF . . . N 13 103.711 127.937 111.974 1 144.66 ? C10 PEF 605 a 1 HETATM 8 C C11 PEF . . . N 13 104.977 127.566 112.709 1 144.66 ? C11 PEF 605 a 1 HETATM 9 C C12 PEF . . . N 13 104.772 126.278 113.494 1 144.66 ? C12 PEF 605 a 1 HETATM 10 C C13 PEF . . . N 13 105.798 126.17 114.615 1 144.66 ? C13 PEF 605 a 1 HETATM 11 C C14 PEF . . . N 13 105.626 124.897 115.434 1 144.66 ? C14 PEF 605 a 1 HETATM 12 C C15 PEF . . . N 13 106.645 124.849 116.566 1 144.66 ? C15 PEF 605 a 1 HETATM 13 C C16 PEF . . . N 13 106.331 123.709 117.524 1 144.66 ? C16 PEF 605 a 1 HETATM 14 C C17 PEF . . . N 13 107.276 123.721 118.717 1 144.66 ? C17 PEF 605 a 1 HETATM 15 C C18 PEF . . . N 13 106.765 122.804 119.823 1 144.66 ? C18 PEF 605 a 1 HETATM 16 C C30 PEF . . . N 13 99.652 126.874 110.302 1 144.66 ? C30 PEF 605 a 1 HETATM 17 C C31 PEF . . . N 13 99.23 125.658 111.077 1 144.66 ? C31 PEF 605 a 1 HETATM 18 C C32 PEF . . . N 13 100.091 125.639 112.328 1 144.66 ? C32 PEF 605 a 1 HETATM 19 C C33 PEF . . . N 13 100.205 124.252 112.938 1 144.66 ? C33 PEF 605 a 1 HETATM 20 C C34 PEF . . . N 13 101.165 124.321 114.115 1 144.66 ? C34 PEF 605 a 1 HETATM 21 C C35 PEF . . . N 13 101.37 122.955 114.75 1 144.66 ? C35 PEF 605 a 1 HETATM 22 C C36 PEF . . . N 13 102.362 123.042 115.903 1 144.66 ? C36 PEF 605 a 1 HETATM 23 C C37 PEF . . . N 13 102.329 121.774 116.746 1 144.66 ? C37 PEF 605 a 1 HETATM 24 C C38 PEF . . . N 13 103.058 121.982 118.067 1 144.66 ? C38 PEF 605 a 1 HETATM 25 O O4 PEF . . . N 13 102.831 128.562 112.537 1 144.66 ? O4 PEF 605 a 1 HETATM 26 O O5 PEF . . . N 13 98.841 127.621 109.791 1 144.66 ? O5 PEF 605 a 1 HETATM 27 O O2 PEF . . . N 13 103.505 127.541 110.593 1 144.66 ? O2 PEF 605 a 1 HETATM 28 O O3 PEF . . . N 13 101.07 127.14 110.17 1 144.66 ? O3 PEF 605 a 1 HETATM 29 O O1P PEF . . . N 13 105.225 129.983 106.717 1 144.66 ? O1P PEF 605 a 1 HETATM 30 O O2P PEF . . . N 13 105.304 127.551 105.872 1 144.66 ? O2P PEF 605 a 1 HETATM 31 O O3P PEF . . . N 13 103.556 128.354 107.538 1 144.66 ? O3P PEF 605 a 1 HETATM 32 O O4P PEF . . . N 13 103.453 129.15 105.161 1 144.66 ? O4P PEF 605 a 1 HETATM 33 P P PEF . . . N 13 104.496 128.742 106.304 1 144.66 ? P PEF 605 a 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 33 #