data_7Z14 # _model_server_result.job_id 9zTjB753I-whMz2R1oWu8Q _model_server_result.datetime_utc '2024-11-21 14:20:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":601}' # _entry.id 7Z14 # _exptl.entry_id 7Z14 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z14 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 6 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 6 5 4 MAN MAN C1 O1 . O6 HO6 . sing 5 ? 6 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 6 7 4 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 6 8 3 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 6 9 8 MAN MAN C1 O1 . O2 HO2 . sing 9 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 8 3 2 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 8 4 3 MAN NAG C1 O1 . O6 HO6 . sing 13 ? 8 5 4 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n H NAG 1 H 1 NAG D 501 NAG 6 n H NAG 2 H 2 NAG D 502 NAG 6 n H BMA 3 H 3 BMA D 503 BMA 6 n H MAN 4 H 4 MAN D 504 MAN 6 n H MAN 5 H 5 MAN D 509 MAN 6 n H MAN 6 H 6 MAN D 510 MAN 6 n H MAN 7 H 7 MAN D 505 MAN 6 n H MAN 8 H 8 MAN D 506 MAN 6 n H MAN 9 H 9 MAN D 507 MAN 7 n I NAG 1 I 1 NAG C 601 NAG 7 n I NAG 2 I 2 NAG C 602 NAG 7 n J NAG 1 J 1 NAG B 702 NAG 7 n J NAG 2 J 2 NAG B 703 NAG 6 n K NAG 1 K 1 NAG A 501 NAG 6 n K NAG 2 K 2 NAG A 502 NAG 6 n K BMA 3 K 3 BMA A 503 BMA 6 n K MAN 4 K 4 MAN A 504 MAN 6 n K MAN 5 K 5 MAN A 509 MAN 6 n K MAN 6 K 6 MAN A 510 MAN 6 n K MAN 7 K 7 MAN A 505 MAN 6 n K MAN 8 K 8 MAN A 506 MAN 6 n K MAN 9 K 9 MAN A 507 MAN 8 n L NAG 1 L 1 NAG E 501 NAG 8 n L NAG 2 L 2 NAG E 502 NAG 8 n L NAG 3 L 3 NAG E 503 NAG 8 n L MAN 4 L 4 MAN E 504 MAN 8 n L MAN 5 L 5 MAN E 505 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 192 A CYS 192 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 B SG CYS 128 B CYS 128 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 D SG CYS 128 D CYS 128 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 D SG CYS 192 D CYS 192 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 E SG CYS 128 E CYS 128 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 F SG CYS 3 F CYS 3 1_555 F SG CYS 22 F CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 F SG CYS 17 F CYS 17 1_555 F SG CYS 39 F CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 F SG CYS 41 F CYS 41 1_555 F SG CYS 52 F CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 F SG CYS 53 F CYS 53 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 G SG CYS 3 G CYS 3 1_555 G SG CYS 22 G CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 G SG CYS 17 G CYS 17 1_555 G SG CYS 39 G CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 G SG CYS 41 G CYS 41 1_555 G SG CYS 52 G CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 G SG CYS 53 G CYS 53 1_555 G SG CYS 58 G CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 141 B ASN 141 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 C ND2 ASN 143 C ASN 143 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 C ND2 ASN 208 C ASN 208 1_555 M C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 D ND2 ASN 141 D ASN 141 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 E ND2 ASN 141 E ASN 141 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale10 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 H O6 MAN . H MAN 4 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 H O3 MAN . H MAN 4 1_555 H C1 MAN . H MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 H O2 MAN . H MAN 5 1_555 H C1 MAN . H MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 H O2 MAN . H MAN 8 1_555 H C1 MAN . H MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale18 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale19 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale20 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale21 K O6 MAN . K MAN 4 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale22 K O3 MAN . K MAN 4 1_555 K C1 MAN . K MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale23 K O2 MAN . K MAN 5 1_555 K C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale24 K O2 MAN . K MAN 8 1_555 K C1 MAN . K MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale25 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale26 L O4 NAG . L NAG 2 1_555 L C1 NAG . L NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale27 L O6 NAG . L NAG 3 1_555 L C1 MAN . L MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale28 L O6 MAN . L MAN 4 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7Z14 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id M _pdbx_nonpoly_scheme.entity_id 9 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 605 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 9 113.078 162.924 174.507 1 108.89 ? C1 NAG 601 C 1 HETATM 2 C C2 NAG . . . M 9 112.315 161.691 174.983 1 108.89 ? C2 NAG 601 C 1 HETATM 3 C C3 NAG . . . M 9 110.951 161.624 174.305 1 108.89 ? C3 NAG 601 C 1 HETATM 4 C C4 NAG . . . M 9 110.19 162.927 174.516 1 108.89 ? C4 NAG 601 C 1 HETATM 5 C C5 NAG . . . M 9 111.04 164.114 174.073 1 108.89 ? C5 NAG 601 C 1 HETATM 6 C C6 NAG . . . M 9 110.395 165.447 174.373 1 108.89 ? C6 NAG 601 C 1 HETATM 7 C C7 NAG . . . M 9 113.635 159.751 175.699 1 108.89 ? C7 NAG 601 C 1 HETATM 8 C C8 NAG . . . M 9 114.382 158.53 175.256 1 108.89 ? C8 NAG 601 C 1 HETATM 9 N N2 NAG . . . M 9 113.073 160.478 174.728 1 108.89 ? N2 NAG 601 C 1 HETATM 10 O O3 NAG . . . M 9 110.208 160.536 174.841 1 108.89 ? O3 NAG 601 C 1 HETATM 11 O O4 NAG . . . M 9 108.979 162.91 173.768 1 108.89 ? O4 NAG 601 C 1 HETATM 12 O O5 NAG . . . M 9 112.3 164.1 174.761 1 108.89 ? O5 NAG 601 C 1 HETATM 13 O O6 NAG . . . M 9 109.132 165.281 175.003 1 108.89 ? O6 NAG 601 C 1 HETATM 14 O O7 NAG . . . M 9 113.545 160.065 176.881 1 108.89 ? O7 NAG 601 C 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #