data_7Z16
#
_model_server_result.job_id            fxETvYu-Y-uG63QsmIGHJw 
_model_server_result.datetime_utc      '2024-10-25 20:28:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1002}' 
#
_entry.id    7Z16 
#
_exptl.entry_id    7Z16 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Z16 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 T N N 
? 10 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 328 C HIS 328 1_555 M ZN ZN . C ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 C NE2 HIS 333 C HIS 333 1_555 M ZN ZN . C ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc3 D SG CYS 241 D CYS 241 1_555 N ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 D SG CYS 244 D CYS 244 1_555 N ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc5 D SG CYS 266 D CYS 266 1_555 N ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 D SG CYS 272 D CYS 272 1_555 N ZN ZN . D ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc7 G NE2 HIS 328 G HIS 328 1_555 P ZN ZN . G ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc8 G NE2 HIS 333 G HIS 333 1_555 P ZN ZN . G ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc9 H SG CYS 241 H CYS 241 1_555 Q ZN ZN . H ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc10 H SG CYS 244 H CYS 244 1_555 Q ZN ZN . H ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc11 H SG CYS 266 H CYS 266 1_555 Q ZN ZN . H ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc12 H SG CYS 272 H CYS 272 1_555 Q ZN ZN . H ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc13 I OG1 THR 45 I THR 45 1_555 S MG MG . I MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc14 S MG MG . I MG 1001 1_555 T O2G ANP . I ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc15 S MG MG . I MG 1001 1_555 T O2B ANP . I ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc16 S MG MG . I MG 1001 1_555 W O HOH . I HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc17 S MG MG . I MG 1001 1_555 W O HOH . I HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc18 J OG1 THR 45 J THR 45 1_555 U MG MG . J MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc19 U MG MG . J MG 1001 1_555 V O2G ANP . J ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc20 U MG MG . J MG 1001 1_555 V O2B ANP . J ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc21 U MG MG . J MG 1001 1_555 X O HOH . J HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc22 U MG MG . J MG 1001 1_555 X O HOH . J HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     7Z16 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 7 ZN C 1 1000 1000 ZN ZN . 
N 7 ZN D 1 1000 1000 ZN ZN . 
O 8 PO4 D 1 1001 1001 PO4 PO4 . 
P 7 ZN G 1 1000 1000 ZN ZN . 
Q 7 ZN H 1 1000 1000 ZN ZN . 
R 8 PO4 H 1 1001 1001 PO4 PO4 . 
S 9 MG I 1 1001 1001 MG MG . 
T 10 ANP I 1 1002 1004 ANP ANP . 
U 9 MG J 1 1001 1001 MG MG . 
V 10 ANP J 1 1002 1004 ANP ANP . 
W 11 HOH I 1 1101 1005 HOH HOH . 
W 11 HOH I 2 1102 1007 HOH HOH . 
W 11 HOH I 3 1103 1006 HOH HOH . 
X 11 HOH J 1 1101 1005 HOH HOH . 
X 11 HOH J 2 1102 1007 HOH HOH . 
X 11 HOH J 3 1103 1006 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . T 10 210.249 198.136 159.539 1 38.12 ? PG ANP 1002 I 1 
HETATM 2 O O1G ANP . . . T 10 209.471 196.936 159.291 1 38.12 ? O1G ANP 1002 I 1 
HETATM 3 O O2G ANP . . . T 10 209.566 198.955 160.646 1 38.12 ? O2G ANP 1002 I 1 
HETATM 4 O O3G ANP . . . T 10 210.349 198.984 158.219 1 38.12 ? O3G ANP 1002 I 1 
HETATM 5 P PB ANP . . . T 10 213.037 198.775 160.365 1 38.12 ? PB ANP 1002 I 1 
HETATM 6 O O1B ANP . . . T 10 213.965 198.875 159.147 1 38.12 ? O1B ANP 1002 I 1 
HETATM 7 O O2B ANP . . . T 10 212.462 200.104 160.687 1 38.12 ? O2B ANP 1002 I 1 
HETATM 8 N N3B ANP . . . T 10 211.837 197.659 160.06 1 38.12 ? N3B ANP 1002 I 1 
HETATM 9 P PA ANP . . . T 10 214.339 198.973 163.034 1 38.12 ? PA ANP 1002 I 1 
HETATM 10 O O1A ANP . . . T 10 215.084 200.243 162.706 1 38.12 -1 O1A ANP 1002 I 1 
HETATM 11 O O2A ANP . . . T 10 213.12 199.279 163.898 1 38.12 ? O2A ANP 1002 I 1 
HETATM 12 O O3A ANP . . . T 10 213.911 198.177 161.625 1 38.12 ? O3A ANP 1002 I 1 
HETATM 13 O O5' ANP . . . T 10 215.361 197.936 163.83 1 38.12 ? O5' ANP 1002 I 1 
HETATM 14 C C5' ANP . . . T 10 216.428 197.375 163.035 1 38.12 ? C5' ANP 1002 I 1 
HETATM 15 C C4' ANP . . . T 10 216.888 196.203 163.628 1 38.12 ? C4' ANP 1002 I 1 
HETATM 16 O O4' ANP . . . T 10 217.131 196.55 165.07 1 38.12 ? O4' ANP 1002 I 1 
HETATM 17 C C3' ANP . . . T 10 215.796 195.006 163.651 1 38.12 ? C3' ANP 1002 I 1 
HETATM 18 O O3' ANP . . . T 10 216.513 193.626 163.466 1 38.12 ? O3' ANP 1002 I 1 
HETATM 19 C C2' ANP . . . T 10 215.299 195.056 164.769 1 38.12 ? C2' ANP 1002 I 1 
HETATM 20 O O2' ANP . . . T 10 214.891 193.73 165.196 1 38.12 ? O2' ANP 1002 I 1 
HETATM 21 C C1' ANP . . . T 10 216.591 195.573 165.709 1 38.12 ? C1' ANP 1002 I 1 
HETATM 22 N N9 ANP . . . T 10 216.321 195.984 167.047 1 38.12 ? N9 ANP 1002 I 1 
HETATM 23 C C8 ANP . . . T 10 215.463 196.993 166.844 1 38.12 ? C8 ANP 1002 I 1 
HETATM 24 N N7 ANP . . . T 10 215.15 197.473 168.056 1 38.12 ? N7 ANP 1002 I 1 
HETATM 25 C C5 ANP . . . T 10 215.833 196.766 168.985 1 38.12 ? C5 ANP 1002 I 1 
HETATM 26 C C6 ANP . . . T 10 215.903 196.819 170.377 1 38.12 ? C6 ANP 1002 I 1 
HETATM 27 N N6 ANP . . . T 10 215.216 197.708 171.218 1 38.12 ? N6 ANP 1002 I 1 
HETATM 28 N N1 ANP . . . T 10 216.693 195.963 171.045 1 38.12 ? N1 ANP 1002 I 1 
HETATM 29 C C2 ANP . . . T 10 217.418 195.05 170.381 1 38.12 ? C2 ANP 1002 I 1 
HETATM 30 N N3 ANP . . . T 10 217.353 194.993 169.017 1 38.12 ? N3 ANP 1002 I 1 
HETATM 31 C C4 ANP . . . T 10 216.561 195.854 168.347 1 38.12 ? C4 ANP 1002 I 1 
HETATM 32 H HNB1 ANP . . . T 10 211.967 196.722 160.398 1 38.12 ? HNB1 ANP 1002 I 1 
HETATM 33 H "H5'1" ANP . . . T 10 216.075 197.165 162.085 1 38.12 ? "H5'1" ANP 1002 I 1 
HETATM 34 H "H5'2" ANP . . . T 10 217.24 198.085 162.976 1 38.12 ? "H5'2" ANP 1002 I 1 
HETATM 35 H H4' ANP . . . T 10 217.795 195.868 163.162 1 38.12 ? H4' ANP 1002 I 1 
HETATM 36 H H3' ANP . . . T 10 215.04 195.152 162.865 1 38.12 ? H3' ANP 1002 I 1 
HETATM 37 H HO3' ANP . . . T 10 216.173 193.181 162.686 1 38.12 ? HO3' ANP 1002 I 1 
HETATM 38 H H2' ANP . . . T 10 214.492 195.725 164.78 1 38.12 ? H2' ANP 1002 I 1 
HETATM 39 H HO2' ANP . . . T 10 213.96 193.589 164.99 1 38.12 ? HO2' ANP 1002 I 1 
HETATM 40 H H1' ANP . . . T 10 217.325 194.713 165.758 1 38.12 ? H1' ANP 1002 I 1 
HETATM 41 H H8 ANP . . . T 10 215.093 197.328 165.925 1 38.12 ? H8 ANP 1002 I 1 
HETATM 42 H HN61 ANP . . . T 10 214.941 198.585 170.884 1 38.12 ? HN61 ANP 1002 I 1 
HETATM 43 H HN62 ANP . . . T 10 215.032 197.445 172.151 1 38.12 ? HN62 ANP 1002 I 1 
HETATM 44 H H2 ANP . . . T 10 218.086 194.327 170.945 1 38.12 ? H2 ANP 1002 I 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#