data_7Z1B # _model_server_result.job_id G0W_ugd9a5wM151geRIdwA _model_server_result.datetime_utc '2024-10-11 19:22:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 7Z1B # _exptl.entry_id 7Z1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z1B _cell.length_a 58.49 _cell.length_b 120.86 _cell.length_c 171.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J,K 1 1 D,E,F,H,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 336 1_555 A SG CYS 32 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 A SG CYS 50 A CYS 379 1_555 A SG CYS 103 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 62 A CYS 391 1_555 A SG CYS 196 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf4 A SG CYS 151 A CYS 480 1_555 A SG CYS 159 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf6 C SG CYS 22 F CYS 22 1_555 C SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf7 D SG CYS 7 C CYS 336 1_555 D SG CYS 32 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf8 D SG CYS 50 C CYS 379 1_555 D SG CYS 103 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf9 D SG CYS 62 C CYS 391 1_555 D SG CYS 196 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf10 D SG CYS 151 C CYS 480 1_555 D SG CYS 159 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf11 E SG CYS 22 D CYS 22 1_555 E SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf12 F SG CYS 22 E CYS 22 1_555 F SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 14 A ASN 343 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 D ND2 ASN 14 C ASN 343 1_555 H C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7Z1B _atom_sites.fract_transf_matrix[1][1] 0.017097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 601 601 NAG NAG . H 4 NAG C 1 601 601 NAG NAG . I 5 HOH A 1 701 113 HOH HOH . I 5 HOH A 2 702 7 HOH HOH . I 5 HOH A 3 703 60 HOH HOH . I 5 HOH A 4 704 12 HOH HOH . I 5 HOH A 5 705 138 HOH HOH . I 5 HOH A 6 706 74 HOH HOH . I 5 HOH A 7 707 14 HOH HOH . I 5 HOH A 8 708 140 HOH HOH . I 5 HOH A 9 709 73 HOH HOH . I 5 HOH A 10 710 44 HOH HOH . I 5 HOH A 11 711 147 HOH HOH . I 5 HOH A 12 712 142 HOH HOH . I 5 HOH A 13 713 16 HOH HOH . I 5 HOH A 14 714 120 HOH HOH . I 5 HOH A 15 715 145 HOH HOH . I 5 HOH A 16 716 153 HOH HOH . I 5 HOH A 17 717 61 HOH HOH . I 5 HOH A 18 718 3 HOH HOH . I 5 HOH A 19 719 15 HOH HOH . I 5 HOH A 20 720 4 HOH HOH . I 5 HOH A 21 721 62 HOH HOH . I 5 HOH A 22 722 53 HOH HOH . I 5 HOH A 23 723 52 HOH HOH . I 5 HOH A 24 724 63 HOH HOH . I 5 HOH A 25 725 77 HOH HOH . I 5 HOH A 26 726 71 HOH HOH . I 5 HOH A 27 727 1 HOH HOH . I 5 HOH A 28 728 45 HOH HOH . I 5 HOH A 29 729 130 HOH HOH . I 5 HOH A 30 730 66 HOH HOH . I 5 HOH A 31 731 33 HOH HOH . I 5 HOH A 32 732 39 HOH HOH . I 5 HOH A 33 733 81 HOH HOH . I 5 HOH A 34 734 75 HOH HOH . I 5 HOH A 35 735 122 HOH HOH . I 5 HOH A 36 736 76 HOH HOH . I 5 HOH A 37 737 30 HOH HOH . I 5 HOH A 38 738 42 HOH HOH . I 5 HOH A 39 739 23 HOH HOH . I 5 HOH A 40 740 13 HOH HOH . I 5 HOH A 41 741 79 HOH HOH . I 5 HOH A 42 742 72 HOH HOH . I 5 HOH A 43 743 80 HOH HOH . I 5 HOH A 44 744 28 HOH HOH . I 5 HOH A 45 745 55 HOH HOH . I 5 HOH A 46 746 117 HOH HOH . I 5 HOH A 47 747 57 HOH HOH . I 5 HOH A 48 748 37 HOH HOH . I 5 HOH A 49 749 116 HOH HOH . I 5 HOH A 50 750 118 HOH HOH . I 5 HOH A 51 751 158 HOH HOH . I 5 HOH A 52 752 143 HOH HOH . I 5 HOH A 53 753 119 HOH HOH . I 5 HOH A 54 754 155 HOH HOH . I 5 HOH A 55 755 132 HOH HOH . I 5 HOH A 56 756 126 HOH HOH . I 5 HOH A 57 757 68 HOH HOH . I 5 HOH A 58 758 104 HOH HOH . I 5 HOH A 59 759 160 HOH HOH . I 5 HOH A 60 760 150 HOH HOH . I 5 HOH A 61 761 99 HOH HOH . I 5 HOH A 62 762 98 HOH HOH . I 5 HOH A 63 763 59 HOH HOH . I 5 HOH A 64 764 11 HOH HOH . I 5 HOH A 65 765 78 HOH HOH . I 5 HOH A 66 766 58 HOH HOH . I 5 HOH A 67 767 159 HOH HOH . J 5 HOH B 1 201 92 HOH HOH . J 5 HOH B 2 202 137 HOH HOH . J 5 HOH B 3 203 22 HOH HOH . J 5 HOH B 4 204 34 HOH HOH . J 5 HOH B 5 205 97 HOH HOH . J 5 HOH B 6 206 100 HOH HOH . J 5 HOH B 7 207 90 HOH HOH . J 5 HOH B 8 208 43 HOH HOH . J 5 HOH B 9 209 38 HOH HOH . J 5 HOH B 10 210 50 HOH HOH . J 5 HOH B 11 211 56 HOH HOH . J 5 HOH B 12 212 95 HOH HOH . J 5 HOH B 13 213 21 HOH HOH . J 5 HOH B 14 214 41 HOH HOH . J 5 HOH B 15 215 19 HOH HOH . J 5 HOH B 16 216 20 HOH HOH . J 5 HOH B 17 217 94 HOH HOH . J 5 HOH B 18 218 96 HOH HOH . J 5 HOH B 19 219 67 HOH HOH . J 5 HOH B 20 220 151 HOH HOH . J 5 HOH B 21 221 157 HOH HOH . J 5 HOH B 22 222 131 HOH HOH . J 5 HOH B 23 223 35 HOH HOH . J 5 HOH B 24 224 51 HOH HOH . J 5 HOH B 25 225 105 HOH HOH . J 5 HOH B 26 226 133 HOH HOH . J 5 HOH B 27 227 129 HOH HOH . J 5 HOH B 28 228 141 HOH HOH . J 5 HOH B 29 229 127 HOH HOH . J 5 HOH B 30 230 115 HOH HOH . J 5 HOH B 31 231 101 HOH HOH . J 5 HOH B 32 232 125 HOH HOH . J 5 HOH B 33 233 103 HOH HOH . J 5 HOH B 34 234 102 HOH HOH . K 5 HOH F 1 201 26 HOH HOH . K 5 HOH F 2 202 106 HOH HOH . K 5 HOH F 3 203 107 HOH HOH . K 5 HOH F 4 204 31 HOH HOH . K 5 HOH F 5 205 64 HOH HOH . K 5 HOH F 6 206 54 HOH HOH . K 5 HOH F 7 207 136 HOH HOH . K 5 HOH F 8 208 139 HOH HOH . K 5 HOH F 9 209 40 HOH HOH . K 5 HOH F 10 210 111 HOH HOH . K 5 HOH F 11 211 112 HOH HOH . K 5 HOH F 12 212 108 HOH HOH . K 5 HOH F 13 213 144 HOH HOH . K 5 HOH F 14 214 27 HOH HOH . K 5 HOH F 15 215 148 HOH HOH . K 5 HOH F 16 216 134 HOH HOH . L 5 HOH C 1 701 10 HOH HOH . L 5 HOH C 2 702 156 HOH HOH . L 5 HOH C 3 703 123 HOH HOH . L 5 HOH C 4 704 2 HOH HOH . L 5 HOH C 5 705 84 HOH HOH . L 5 HOH C 6 706 70 HOH HOH . L 5 HOH C 7 707 91 HOH HOH . L 5 HOH C 8 708 93 HOH HOH . L 5 HOH C 9 709 152 HOH HOH . L 5 HOH C 10 710 146 HOH HOH . L 5 HOH C 11 711 89 HOH HOH . L 5 HOH C 12 712 121 HOH HOH . L 5 HOH C 13 713 128 HOH HOH . L 5 HOH C 14 714 124 HOH HOH . L 5 HOH C 15 715 83 HOH HOH . L 5 HOH C 16 716 135 HOH HOH . L 5 HOH C 17 717 85 HOH HOH . L 5 HOH C 18 718 82 HOH HOH . L 5 HOH C 19 719 86 HOH HOH . L 5 HOH C 20 720 88 HOH HOH . L 5 HOH C 21 721 69 HOH HOH . L 5 HOH C 22 722 87 HOH HOH . M 5 HOH D 1 201 18 HOH HOH . M 5 HOH D 2 202 29 HOH HOH . M 5 HOH D 3 203 17 HOH HOH . M 5 HOH D 4 204 25 HOH HOH . M 5 HOH D 5 205 109 HOH HOH . N 5 HOH E 1 201 9 HOH HOH . N 5 HOH E 2 202 36 HOH HOH . N 5 HOH E 3 203 149 HOH HOH . N 5 HOH E 4 204 32 HOH HOH . N 5 HOH E 5 205 110 HOH HOH . N 5 HOH E 6 206 154 HOH HOH . N 5 HOH E 7 207 8 HOH HOH . N 5 HOH E 8 208 114 HOH HOH . N 5 HOH E 9 209 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 -10.799 -23.77 -7.544 1 83.47 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . G 4 -11.591 -24.667 -8.483 1 93.85 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . G 4 -10.813 -25.812 -9.113 1 94.07 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . G 4 -9.429 -25.436 -9.603 1 86.61 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . G 4 -8.659 -24.375 -8.806 1 90.19 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . G 4 -8.194 -23.254 -9.746 1 88.88 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . G 4 -13.914 -25.364 -8.353 1 81.9 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . G 4 -14.951 -25.994 -7.478 1 79.92 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . G 4 -12.736 -25.197 -7.755 1 61.13 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . G 4 -11.493 -26.243 -10.291 1 110.93 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . G 4 -8.694 -26.659 -9.608 1 52.58 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . G 4 -9.361 -23.802 -7.675 1 131.83 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . G 4 -7.437 -23.758 -10.862 1 61.49 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . G 4 -14.134 -25.071 -9.533 1 63.29 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #