data_7Z1F # _model_server_result.job_id EamIVKO5gbbJSF-u44iMJA _model_server_result.datetime_utc '2025-01-10 17:15:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7Z1F # _exptl.entry_id 7Z1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z1F _cell.length_a 86.001 _cell.length_b 86.001 _cell.length_c 237.735 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 190 A SER 215 1_555 A N PTR 191 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PTR 191 A PTR 216 1_555 A N ILE 192 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C SER 190 B SER 215 1_555 B N PTR 191 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C PTR 191 B PTR 216 1_555 B N ILE 192 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD2 ASP 156 A ASP 181 1_555 E Y YT3 . A YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc2 A OD2 ASP 175 A ASP 200 1_555 E Y YT3 . A YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc3 A OD2 ASP 235 A ASP 260 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc4 A OD1 ASP 239 A ASP 264 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc5 A OD2 ASP 239 A ASP 264 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A OE2 GLU 243 A GLU 268 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 E Y YT3 . A YT3 403 1_555 J O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc8 F Y YT3 . A YT3 404 1_555 J O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc9 F Y YT3 . A YT3 404 1_655 B O HIS 356 B HIS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.269 ? metalc ? metalc10 B OD2 ASP 156 B ASP 181 1_555 H Y YT3 . B YT3 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc11 B OD2 ASP 175 B ASP 200 1_555 H Y YT3 . B YT3 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc12 B OD1 ASP 239 B ASP 264 1_555 I Y YT3 . B YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.217 ? metalc ? metalc13 B OD2 ASP 239 B ASP 264 1_555 I Y YT3 . B YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc14 B OE2 GLU 243 B GLU 268 1_555 I Y YT3 . B YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc15 H Y YT3 . B YT3 402 1_555 K O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc16 I Y YT3 . B YT3 403 1_555 K O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 213 n y N1 C5 IMD sing 214 n y N1 HN1 IMD sing 215 n n C2 N3 IMD doub 216 n y C2 H2 IMD sing 217 n n N3 C4 IMD sing 218 n y N3 HN3 IMD sing 219 n n C4 C5 IMD doub 220 n y C4 H4 IMD sing 221 n n C5 H5 IMD sing 222 n n # _atom_sites.entry_id 7Z1F _atom_sites.fract_transf_matrix[1][1] 0.011628 _atom_sites.fract_transf_matrix[1][2] 0.006713 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3NG A 1 401 403 3NG 3NG . D 3 IMD A 1 402 405 IMD IMD . E 4 YT3 A 1 403 410 YT3 YT3 . F 4 YT3 A 1 404 411 YT3 YT3 . G 2 3NG B 1 401 403 3NG 3NG . H 4 YT3 B 1 402 410 YT3 YT3 . I 4 YT3 B 1 403 411 YT3 YT3 . J 5 HOH A 1 501 24 HOH HOH . J 5 HOH A 2 502 23 HOH HOH . J 5 HOH A 3 503 26 HOH HOH . J 5 HOH A 4 504 13 HOH HOH . J 5 HOH A 5 505 2 HOH HOH . J 5 HOH A 6 506 46 HOH HOH . J 5 HOH A 7 507 9 HOH HOH . J 5 HOH A 8 508 33 HOH HOH . J 5 HOH A 9 509 19 HOH HOH . J 5 HOH A 10 510 17 HOH HOH . J 5 HOH A 11 511 27 HOH HOH . J 5 HOH A 12 512 28 HOH HOH . J 5 HOH A 13 513 43 HOH HOH . J 5 HOH A 14 514 11 HOH HOH . J 5 HOH A 15 515 34 HOH HOH . J 5 HOH A 16 516 12 HOH HOH . J 5 HOH A 17 517 36 HOH HOH . J 5 HOH A 18 518 37 HOH HOH . J 5 HOH A 19 519 7 HOH HOH . J 5 HOH A 20 520 39 HOH HOH . J 5 HOH A 21 521 14 HOH HOH . J 5 HOH A 22 522 51 HOH HOH . J 5 HOH A 23 523 29 HOH HOH . J 5 HOH A 24 524 18 HOH HOH . J 5 HOH A 25 525 1 HOH HOH . J 5 HOH A 26 526 38 HOH HOH . K 5 HOH B 1 501 32 HOH HOH . K 5 HOH B 2 502 5 HOH HOH . K 5 HOH B 3 503 10 HOH HOH . K 5 HOH B 4 504 15 HOH HOH . K 5 HOH B 5 505 8 HOH HOH . K 5 HOH B 6 506 30 HOH HOH . K 5 HOH B 7 507 16 HOH HOH . K 5 HOH B 8 508 22 HOH HOH . K 5 HOH B 9 509 47 HOH HOH . K 5 HOH B 10 510 21 HOH HOH . K 5 HOH B 11 511 52 HOH HOH . K 5 HOH B 12 512 4 HOH HOH . K 5 HOH B 13 513 6 HOH HOH . K 5 HOH B 14 514 25 HOH HOH . K 5 HOH B 15 515 42 HOH HOH . K 5 HOH B 16 516 41 HOH HOH . K 5 HOH B 17 517 20 HOH HOH . K 5 HOH B 18 518 48 HOH HOH . K 5 HOH B 19 519 44 HOH HOH . K 5 HOH B 20 520 40 HOH HOH . K 5 HOH B 21 521 35 HOH HOH . K 5 HOH B 22 522 31 HOH HOH . K 5 HOH B 23 523 49 HOH HOH . K 5 HOH B 24 524 53 HOH HOH . K 5 HOH B 25 525 45 HOH HOH . K 5 HOH B 26 526 3 HOH HOH . K 5 HOH B 27 527 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 3 21.409 -4.009 -0.164 1 88.24 ? N1 IMD 402 A 1 HETATM 2 C C2 IMD . . . D 3 22.412 -4.554 -0.887 1 85.13 ? C2 IMD 402 A 1 HETATM 3 N N3 IMD . . . D 3 23.589 -4.111 -0.395 1 84.51 ? N3 IMD 402 A 1 HETATM 4 C C4 IMD . . . D 3 23.331 -3.285 0.641 1 80.12 ? C4 IMD 402 A 1 HETATM 5 C C5 IMD . . . D 3 21.953 -3.221 0.787 1 82.94 ? C5 IMD 402 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 671 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #