data_7Z1F
#
_model_server_result.job_id            2KxI0LindQr5NgHyDnSl0w 
_model_server_result.datetime_utc      '2025-01-10 17:34:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":403}' 
#
_entry.id    7Z1F 
#
_exptl.entry_id    7Z1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.906 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'YTTRIUM (III) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7Z1F 
_cell.length_a            86.001 
_cell.length_b            86.001 
_cell.length_c            237.735 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 190 A SER 215 1_555 A N PTR 191 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C PTR 191 A PTR 216 1_555 A N ILE 192 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C SER 190 B SER 215 1_555 B N PTR 191 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C PTR 191 B PTR 216 1_555 B N ILE 192 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 A OD2 ASP 156 A ASP 181 1_555 E Y YT3 . A YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc2 A OD2 ASP 175 A ASP 200 1_555 E Y YT3 . A YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc3 A OD2 ASP 235 A ASP 260 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? 
metalc ? metalc4 A OD1 ASP 239 A ASP 264 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? 
metalc ? metalc5 A OD2 ASP 239 A ASP 264 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc6 A OE2 GLU 243 A GLU 268 1_555 F Y YT3 . A YT3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc7 E Y YT3 . A YT3 403 1_555 J O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? 
metalc ? metalc8 F Y YT3 . A YT3 404 1_555 J O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
metalc ? metalc9 F Y YT3 . A YT3 404 1_655 B O HIS 356 B HIS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.269 ? 
metalc ? metalc10 B OD2 ASP 156 B ASP 181 1_555 H Y YT3 . B YT3 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc11 B OD2 ASP 175 B ASP 200 1_555 H Y YT3 . B YT3 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? 
metalc ? metalc12 B OD1 ASP 239 B ASP 264 1_555 I Y YT3 . B YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.217 ? 
metalc ? metalc13 B OD2 ASP 239 B ASP 264 1_555 I Y YT3 . B YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc14 B OE2 GLU 243 B GLU 268 1_555 I Y YT3 . B YT3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc15 H Y YT3 . B YT3 402 1_555 K O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? 
metalc ? metalc16 I Y YT3 . B YT3 403 1_555 K O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
#
_chem_comp.formula           'Y 3' 
_chem_comp.formula_weight    88.906 
_chem_comp.id                YT3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'YTTRIUM (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Z1F 
_atom_sites.fract_transf_matrix[1][1]    0.011628 
_atom_sites.fract_transf_matrix[1][2]    0.006713 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013427 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3NG A 1 401 403 3NG 3NG . 
D 3 IMD A 1 402 405 IMD IMD . 
E 4 YT3 A 1 403 410 YT3 YT3 . 
F 4 YT3 A 1 404 411 YT3 YT3 . 
G 2 3NG B 1 401 403 3NG 3NG . 
H 4 YT3 B 1 402 410 YT3 YT3 . 
I 4 YT3 B 1 403 411 YT3 YT3 . 
J 5 HOH A 1 501 24 HOH HOH . 
J 5 HOH A 2 502 23 HOH HOH . 
J 5 HOH A 3 503 26 HOH HOH . 
J 5 HOH A 4 504 13 HOH HOH . 
J 5 HOH A 5 505 2 HOH HOH . 
J 5 HOH A 6 506 46 HOH HOH . 
J 5 HOH A 7 507 9 HOH HOH . 
J 5 HOH A 8 508 33 HOH HOH . 
J 5 HOH A 9 509 19 HOH HOH . 
J 5 HOH A 10 510 17 HOH HOH . 
J 5 HOH A 11 511 27 HOH HOH . 
J 5 HOH A 12 512 28 HOH HOH . 
J 5 HOH A 13 513 43 HOH HOH . 
J 5 HOH A 14 514 11 HOH HOH . 
J 5 HOH A 15 515 34 HOH HOH . 
J 5 HOH A 16 516 12 HOH HOH . 
J 5 HOH A 17 517 36 HOH HOH . 
J 5 HOH A 18 518 37 HOH HOH . 
J 5 HOH A 19 519 7 HOH HOH . 
J 5 HOH A 20 520 39 HOH HOH . 
J 5 HOH A 21 521 14 HOH HOH . 
J 5 HOH A 22 522 51 HOH HOH . 
J 5 HOH A 23 523 29 HOH HOH . 
J 5 HOH A 24 524 18 HOH HOH . 
J 5 HOH A 25 525 1 HOH HOH . 
J 5 HOH A 26 526 38 HOH HOH . 
K 5 HOH B 1 501 32 HOH HOH . 
K 5 HOH B 2 502 5 HOH HOH . 
K 5 HOH B 3 503 10 HOH HOH . 
K 5 HOH B 4 504 15 HOH HOH . 
K 5 HOH B 5 505 8 HOH HOH . 
K 5 HOH B 6 506 30 HOH HOH . 
K 5 HOH B 7 507 16 HOH HOH . 
K 5 HOH B 8 508 22 HOH HOH . 
K 5 HOH B 9 509 47 HOH HOH . 
K 5 HOH B 10 510 21 HOH HOH . 
K 5 HOH B 11 511 52 HOH HOH . 
K 5 HOH B 12 512 4 HOH HOH . 
K 5 HOH B 13 513 6 HOH HOH . 
K 5 HOH B 14 514 25 HOH HOH . 
K 5 HOH B 15 515 42 HOH HOH . 
K 5 HOH B 16 516 41 HOH HOH . 
K 5 HOH B 17 517 20 HOH HOH . 
K 5 HOH B 18 518 48 HOH HOH . 
K 5 HOH B 19 519 44 HOH HOH . 
K 5 HOH B 20 520 40 HOH HOH . 
K 5 HOH B 21 521 35 HOH HOH . 
K 5 HOH B 22 522 31 HOH HOH . 
K 5 HOH B 23 523 49 HOH HOH . 
K 5 HOH B 24 524 53 HOH HOH . 
K 5 HOH B 25 525 45 HOH HOH . 
K 5 HOH B 26 526 3 HOH HOH . 
K 5 HOH B 27 527 50 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           Y 
_atom_site.label_atom_id         Y 
_atom_site.label_comp_id         YT3 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               63.733 
_atom_site.Cartn_y               -28.985 
_atom_site.Cartn_z               3.552 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        84.17 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          Y 
_atom_site.auth_comp_id          YT3 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           476 
_model_server_stats.create_model_time_ms    163 
_model_server_stats.query_time_ms           1188 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           1 
#