data_7Z1Q # _model_server_result.job_id xpyVJZovr-jmczfWUdYA6w _model_server_result.datetime_utc '2024-11-30 01:45:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7Z1Q # _exptl.entry_id 7Z1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z1Q _cell.length_a 87.16 _cell.length_b 87.16 _cell.length_c 55.276 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7Z1Q _atom_sites.fract_transf_matrix[1][1] 0.011473 _atom_sites.fract_transf_matrix[1][2] 0.006624 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NIO A 1 301 301 NIO NIO . C 2 NIO A 1 302 302 NIO NIO . D 3 SO4 A 1 303 303 SO4 SO4 . E 4 GOL A 1 304 304 GOL GOL . F 4 GOL A 1 305 305 GOL GOL . G 5 HOH A 1 401 89 HOH HOH . G 5 HOH A 2 402 78 HOH HOH . G 5 HOH A 3 403 36 HOH HOH . G 5 HOH A 4 404 15 HOH HOH . G 5 HOH A 5 405 29 HOH HOH . G 5 HOH A 6 406 9 HOH HOH . G 5 HOH A 7 407 96 HOH HOH . G 5 HOH A 8 408 86 HOH HOH . G 5 HOH A 9 409 53 HOH HOH . G 5 HOH A 10 410 31 HOH HOH . G 5 HOH A 11 411 63 HOH HOH . G 5 HOH A 12 412 45 HOH HOH . G 5 HOH A 13 413 58 HOH HOH . G 5 HOH A 14 414 95 HOH HOH . G 5 HOH A 15 415 101 HOH HOH . G 5 HOH A 16 416 3 HOH HOH . G 5 HOH A 17 417 55 HOH HOH . G 5 HOH A 18 418 25 HOH HOH . G 5 HOH A 19 419 65 HOH HOH . G 5 HOH A 20 420 14 HOH HOH . G 5 HOH A 21 421 67 HOH HOH . G 5 HOH A 22 422 7 HOH HOH . G 5 HOH A 23 423 37 HOH HOH . G 5 HOH A 24 424 52 HOH HOH . G 5 HOH A 25 425 56 HOH HOH . G 5 HOH A 26 426 42 HOH HOH . G 5 HOH A 27 427 34 HOH HOH . G 5 HOH A 28 428 5 HOH HOH . G 5 HOH A 29 429 16 HOH HOH . G 5 HOH A 30 430 10 HOH HOH . G 5 HOH A 31 431 11 HOH HOH . G 5 HOH A 32 432 70 HOH HOH . G 5 HOH A 33 433 6 HOH HOH . G 5 HOH A 34 434 88 HOH HOH . G 5 HOH A 35 435 72 HOH HOH . G 5 HOH A 36 436 8 HOH HOH . G 5 HOH A 37 437 75 HOH HOH . G 5 HOH A 38 438 1 HOH HOH . G 5 HOH A 39 439 66 HOH HOH . G 5 HOH A 40 440 40 HOH HOH . G 5 HOH A 41 441 54 HOH HOH . G 5 HOH A 42 442 57 HOH HOH . G 5 HOH A 43 443 46 HOH HOH . G 5 HOH A 44 444 68 HOH HOH . G 5 HOH A 45 445 82 HOH HOH . G 5 HOH A 46 446 39 HOH HOH . G 5 HOH A 47 447 71 HOH HOH . G 5 HOH A 48 448 100 HOH HOH . G 5 HOH A 49 449 76 HOH HOH . G 5 HOH A 50 450 94 HOH HOH . G 5 HOH A 51 451 50 HOH HOH . G 5 HOH A 52 452 18 HOH HOH . G 5 HOH A 53 453 13 HOH HOH . G 5 HOH A 54 454 22 HOH HOH . G 5 HOH A 55 455 19 HOH HOH . G 5 HOH A 56 456 23 HOH HOH . G 5 HOH A 57 457 44 HOH HOH . G 5 HOH A 58 458 33 HOH HOH . G 5 HOH A 59 459 51 HOH HOH . G 5 HOH A 60 460 27 HOH HOH . G 5 HOH A 61 461 30 HOH HOH . G 5 HOH A 62 462 102 HOH HOH . G 5 HOH A 63 463 12 HOH HOH . G 5 HOH A 64 464 21 HOH HOH . G 5 HOH A 65 465 64 HOH HOH . G 5 HOH A 66 466 24 HOH HOH . G 5 HOH A 67 467 61 HOH HOH . G 5 HOH A 68 468 74 HOH HOH . G 5 HOH A 69 469 47 HOH HOH . G 5 HOH A 70 470 98 HOH HOH . G 5 HOH A 71 471 73 HOH HOH . G 5 HOH A 72 472 77 HOH HOH . G 5 HOH A 73 473 28 HOH HOH . G 5 HOH A 74 474 4 HOH HOH . G 5 HOH A 75 475 38 HOH HOH . G 5 HOH A 76 476 49 HOH HOH . G 5 HOH A 77 477 84 HOH HOH . G 5 HOH A 78 478 69 HOH HOH . G 5 HOH A 79 479 62 HOH HOH . G 5 HOH A 80 480 83 HOH HOH . G 5 HOH A 81 481 48 HOH HOH . G 5 HOH A 82 482 60 HOH HOH . G 5 HOH A 83 483 35 HOH HOH . G 5 HOH A 84 484 41 HOH HOH . G 5 HOH A 85 485 85 HOH HOH . G 5 HOH A 86 486 32 HOH HOH . G 5 HOH A 87 487 87 HOH HOH . G 5 HOH A 88 488 2 HOH HOH . G 5 HOH A 89 489 91 HOH HOH . G 5 HOH A 90 490 99 HOH HOH . G 5 HOH A 91 491 90 HOH HOH . G 5 HOH A 92 492 93 HOH HOH . G 5 HOH A 93 493 20 HOH HOH . G 5 HOH A 94 494 17 HOH HOH . G 5 HOH A 95 495 81 HOH HOH . G 5 HOH A 96 496 80 HOH HOH . G 5 HOH A 97 497 97 HOH HOH . G 5 HOH A 98 498 79 HOH HOH . G 5 HOH A 99 499 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 7.291 11.748 -16.312 1 49.74 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 4 6.595 10.933 -15.445 1 58.06 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 4 8.805 11.727 -15.956 1 49.37 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 4 9.341 10.467 -15.878 1 56.03 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 4 9.33 12.595 -17.117 1 49 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 4 10.451 13.271 -16.687 1 56.62 ? O3 GOL 304 A 1 HETATM 7 H H11 GOL . . . E 4 6.979 12.666 -16.277 1 59.66 ? H11 GOL 304 A 1 HETATM 8 H H12 GOL . . . E 4 7.188 11.468 -17.235 1 59.66 ? H12 GOL 304 A 1 HETATM 9 H HO1 GOL . . . E 4 6.096 11.444 -15.003 1 69.64 ? HO1 GOL 304 A 1 HETATM 10 H H2 GOL . . . E 4 9.019 12.076 -15.077 1 59.21 ? H2 GOL 304 A 1 HETATM 11 H HO2 GOL . . . E 4 9.243 10.115 -16.614 1 67.21 ? HO2 GOL 304 A 1 HETATM 12 H H31 GOL . . . E 4 8.616 13.186 -17.403 1 58.77 ? H31 GOL 304 A 1 HETATM 13 H H32 GOL . . . E 4 9.504 12.016 -17.876 1 58.77 ? H32 GOL 304 A 1 HETATM 14 H HO3 GOL . . . E 4 10.186 13.734 -16.044 1 67.91 ? HO3 GOL 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #