data_7Z1S # _model_server_result.job_id qriMMSpjRoeaJzvnE07eUw _model_server_result.datetime_utc '2024-12-02 06:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7Z1S # _exptl.entry_id 7Z1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z1S _cell.length_a 86.674 _cell.length_b 86.674 _cell.length_c 55.896 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7Z1S _atom_sites.fract_transf_matrix[1][1] 0.011537 _atom_sites.fract_transf_matrix[1][2] 0.006661 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NIO A 1 301 301 NIO NIO . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 401 51 HOH HOH . D 4 HOH A 2 402 41 HOH HOH . D 4 HOH A 3 403 65 HOH HOH . D 4 HOH A 4 404 57 HOH HOH . D 4 HOH A 5 405 83 HOH HOH . D 4 HOH A 6 406 84 HOH HOH . D 4 HOH A 7 407 86 HOH HOH . D 4 HOH A 8 408 20 HOH HOH . D 4 HOH A 9 409 22 HOH HOH . D 4 HOH A 10 410 26 HOH HOH . D 4 HOH A 11 411 10 HOH HOH . D 4 HOH A 12 412 71 HOH HOH . D 4 HOH A 13 413 69 HOH HOH . D 4 HOH A 14 414 4 HOH HOH . D 4 HOH A 15 415 1 HOH HOH . D 4 HOH A 16 416 90 HOH HOH . D 4 HOH A 17 417 8 HOH HOH . D 4 HOH A 18 418 60 HOH HOH . D 4 HOH A 19 419 50 HOH HOH . D 4 HOH A 20 420 6 HOH HOH . D 4 HOH A 21 421 49 HOH HOH . D 4 HOH A 22 422 74 HOH HOH . D 4 HOH A 23 423 32 HOH HOH . D 4 HOH A 24 424 28 HOH HOH . D 4 HOH A 25 425 72 HOH HOH . D 4 HOH A 26 426 12 HOH HOH . D 4 HOH A 27 427 36 HOH HOH . D 4 HOH A 28 428 33 HOH HOH . D 4 HOH A 29 429 53 HOH HOH . D 4 HOH A 30 430 38 HOH HOH . D 4 HOH A 31 431 3 HOH HOH . D 4 HOH A 32 432 78 HOH HOH . D 4 HOH A 33 433 79 HOH HOH . D 4 HOH A 34 434 18 HOH HOH . D 4 HOH A 35 435 59 HOH HOH . D 4 HOH A 36 436 7 HOH HOH . D 4 HOH A 37 437 67 HOH HOH . D 4 HOH A 38 438 44 HOH HOH . D 4 HOH A 39 439 80 HOH HOH . D 4 HOH A 40 440 13 HOH HOH . D 4 HOH A 41 441 77 HOH HOH . D 4 HOH A 42 442 61 HOH HOH . D 4 HOH A 43 443 40 HOH HOH . D 4 HOH A 44 444 15 HOH HOH . D 4 HOH A 45 445 85 HOH HOH . D 4 HOH A 46 446 14 HOH HOH . D 4 HOH A 47 447 30 HOH HOH . D 4 HOH A 48 448 91 HOH HOH . D 4 HOH A 49 449 31 HOH HOH . D 4 HOH A 50 450 82 HOH HOH . D 4 HOH A 51 451 34 HOH HOH . D 4 HOH A 52 452 21 HOH HOH . D 4 HOH A 53 453 47 HOH HOH . D 4 HOH A 54 454 39 HOH HOH . D 4 HOH A 55 455 56 HOH HOH . D 4 HOH A 56 456 48 HOH HOH . D 4 HOH A 57 457 55 HOH HOH . D 4 HOH A 58 458 76 HOH HOH . D 4 HOH A 59 459 43 HOH HOH . D 4 HOH A 60 460 64 HOH HOH . D 4 HOH A 61 461 75 HOH HOH . D 4 HOH A 62 462 63 HOH HOH . D 4 HOH A 63 463 35 HOH HOH . D 4 HOH A 64 464 24 HOH HOH . D 4 HOH A 65 465 89 HOH HOH . D 4 HOH A 66 466 87 HOH HOH . D 4 HOH A 67 467 58 HOH HOH . D 4 HOH A 68 468 88 HOH HOH . D 4 HOH A 69 469 62 HOH HOH . D 4 HOH A 70 470 17 HOH HOH . D 4 HOH A 71 471 29 HOH HOH . D 4 HOH A 72 472 23 HOH HOH . D 4 HOH A 73 473 37 HOH HOH . D 4 HOH A 74 474 66 HOH HOH . D 4 HOH A 75 475 73 HOH HOH . D 4 HOH A 76 476 54 HOH HOH . D 4 HOH A 77 477 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -2.14 -50.737 2.018 1 62.75 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 -3.394 -51.356 2.347 1 69.65 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 -1.65 -51.398 0.659 1 56.73 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 -1.963 -52.749 0.589 1 66.98 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 -2.328 -50.537 -0.44 1 51.82 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 -1.303 -50.162 -1.322 1 56.63 ? O3 GOL 302 A 1 HETATM 7 H H11 GOL . . . C 3 -1.466 -50.869 2.703 1 75.3 ? H11 GOL 302 A 1 HETATM 8 H H12 GOL . . . C 3 -2.216 -49.777 1.901 1 75.3 ? H12 GOL 302 A 1 HETATM 9 H HO1 GOL . . . C 3 -4.008 -51.029 1.826 1 83.58 ? HO1 GOL 302 A 1 HETATM 10 H H2 GOL . . . C 3 -0.684 -51.368 0.572 1 68.07 ? H2 GOL 302 A 1 HETATM 11 H HO2 GOL . . . C 3 -2.775 -52.812 0.675 1 80.37 ? HO2 GOL 302 A 1 HETATM 12 H H31 GOL . . . C 3 -2.777 -49.785 -0.024 1 62.18 ? H31 GOL 302 A 1 HETATM 13 H H32 GOL . . . C 3 -3.033 -51.055 -0.861 1 62.18 ? H32 GOL 302 A 1 HETATM 14 H HO3 GOL . . . C 3 -0.928 -49.45 -0.991 1 67.95 ? HO3 GOL 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #