data_7Z3Y
#
_model_server_result.job_id            GRG5V2kxhUGx2zc8KgW0XA 
_model_server_result.datetime_utc      '2025-07-06 21:09:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":403}' 
#
_entry.id    7Z3Y 
#
_exptl.entry_id    7Z3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Z3Y 
_cell.length_a            80.995 
_cell.length_b            81.831 
_cell.length_c            168.952 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,H 1 1 
B,G,I 2 1 
C,J 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 269 AAA HIS 276 1_555 F NI NI . AAA NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc2 A NE2 HIS 275 AAA HIS 282 1_555 F NI NI . AAA NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc3 F NI NI . AAA NI 403 1_555 B NE2 HIS 269 BBB HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc4 F NI NI . AAA NI 403 1_555 B NE2 HIS 275 BBB HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc5 F NI NI . AAA NI 403 1_555 C NE2 HIS 269 CCC HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc6 F NI NI . AAA NI 403 1_555 C NE2 HIS 275 CCC HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Z3Y 
_atom_sites.fract_transf_matrix[1][1]    0.012346 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 I9U AAA 1 401 401 I9U LIG . 
E 3 GOL AAA 1 402 402 GOL GOL . 
F 4 NI AAA 1 403 1 NI NI . 
G 3 GOL BBB 1 401 401 GOL GOL . 
H 5 HOH AAA 1 501 47 HOH HOH . 
H 5 HOH AAA 2 502 123 HOH HOH . 
H 5 HOH AAA 3 503 101 HOH HOH . 
H 5 HOH AAA 4 504 9 HOH HOH . 
H 5 HOH AAA 5 505 64 HOH HOH . 
H 5 HOH AAA 6 506 18 HOH HOH . 
H 5 HOH AAA 7 507 93 HOH HOH . 
H 5 HOH AAA 8 508 20 HOH HOH . 
H 5 HOH AAA 9 509 8 HOH HOH . 
H 5 HOH AAA 10 510 70 HOH HOH . 
H 5 HOH AAA 11 511 51 HOH HOH . 
H 5 HOH AAA 12 512 121 HOH HOH . 
H 5 HOH AAA 13 513 40 HOH HOH . 
H 5 HOH AAA 14 514 22 HOH HOH . 
H 5 HOH AAA 15 515 65 HOH HOH . 
H 5 HOH AAA 16 516 19 HOH HOH . 
H 5 HOH AAA 17 517 72 HOH HOH . 
H 5 HOH AAA 18 518 63 HOH HOH . 
H 5 HOH AAA 19 519 13 HOH HOH . 
H 5 HOH AAA 20 520 124 HOH HOH . 
H 5 HOH AAA 21 521 12 HOH HOH . 
H 5 HOH AAA 22 522 26 HOH HOH . 
H 5 HOH AAA 23 523 28 HOH HOH . 
H 5 HOH AAA 24 524 10 HOH HOH . 
H 5 HOH AAA 25 525 27 HOH HOH . 
H 5 HOH AAA 26 526 116 HOH HOH . 
H 5 HOH AAA 27 527 71 HOH HOH . 
H 5 HOH AAA 28 528 45 HOH HOH . 
H 5 HOH AAA 29 529 16 HOH HOH . 
H 5 HOH AAA 30 530 48 HOH HOH . 
H 5 HOH AAA 31 531 57 HOH HOH . 
H 5 HOH AAA 32 532 100 HOH HOH . 
H 5 HOH AAA 33 533 46 HOH HOH . 
H 5 HOH AAA 34 534 66 HOH HOH . 
H 5 HOH AAA 35 535 53 HOH HOH . 
H 5 HOH AAA 36 536 52 HOH HOH . 
H 5 HOH AAA 37 537 42 HOH HOH . 
H 5 HOH AAA 38 538 122 HOH HOH . 
H 5 HOH AAA 39 539 126 HOH HOH . 
H 5 HOH AAA 40 540 7 HOH HOH . 
H 5 HOH AAA 41 541 69 HOH HOH . 
H 5 HOH AAA 42 542 94 HOH HOH . 
H 5 HOH AAA 43 543 59 HOH HOH . 
H 5 HOH AAA 44 544 79 HOH HOH . 
H 5 HOH AAA 45 545 125 HOH HOH . 
H 5 HOH AAA 46 546 74 HOH HOH . 
H 5 HOH AAA 47 547 49 HOH HOH . 
H 5 HOH AAA 48 548 11 HOH HOH . 
H 5 HOH AAA 49 549 24 HOH HOH . 
H 5 HOH AAA 50 550 44 HOH HOH . 
H 5 HOH AAA 51 551 6 HOH HOH . 
H 5 HOH AAA 52 552 21 HOH HOH . 
H 5 HOH AAA 53 553 50 HOH HOH . 
H 5 HOH AAA 54 554 23 HOH HOH . 
H 5 HOH AAA 55 555 17 HOH HOH . 
H 5 HOH AAA 56 556 54 HOH HOH . 
H 5 HOH AAA 57 557 78 HOH HOH . 
H 5 HOH AAA 58 558 62 HOH HOH . 
H 5 HOH AAA 59 559 127 HOH HOH . 
H 5 HOH AAA 60 560 84 HOH HOH . 
H 5 HOH AAA 61 561 14 HOH HOH . 
H 5 HOH AAA 62 562 68 HOH HOH . 
H 5 HOH AAA 63 563 15 HOH HOH . 
H 5 HOH AAA 64 564 29 HOH HOH . 
H 5 HOH AAA 65 565 4 HOH HOH . 
H 5 HOH AAA 66 566 25 HOH HOH . 
H 5 HOH AAA 67 567 98 HOH HOH . 
H 5 HOH AAA 68 568 120 HOH HOH . 
H 5 HOH AAA 69 569 43 HOH HOH . 
H 5 HOH AAA 70 570 106 HOH HOH . 
H 5 HOH AAA 71 571 67 HOH HOH . 
H 5 HOH AAA 72 572 97 HOH HOH . 
H 5 HOH AAA 73 573 105 HOH HOH . 
I 5 HOH BBB 1 501 90 HOH HOH . 
I 5 HOH BBB 2 502 117 HOH HOH . 
I 5 HOH BBB 3 503 80 HOH HOH . 
I 5 HOH BBB 4 504 32 HOH HOH . 
I 5 HOH BBB 5 505 83 HOH HOH . 
I 5 HOH BBB 6 506 95 HOH HOH . 
I 5 HOH BBB 7 507 33 HOH HOH . 
I 5 HOH BBB 8 508 35 HOH HOH . 
I 5 HOH BBB 9 509 104 HOH HOH . 
I 5 HOH BBB 10 510 36 HOH HOH . 
I 5 HOH BBB 11 511 91 HOH HOH . 
I 5 HOH BBB 12 512 92 HOH HOH . 
I 5 HOH BBB 13 513 99 HOH HOH . 
I 5 HOH BBB 14 514 1 HOH HOH . 
I 5 HOH BBB 15 515 128 HOH HOH . 
I 5 HOH BBB 16 516 5 HOH HOH . 
I 5 HOH BBB 17 517 82 HOH HOH . 
I 5 HOH BBB 18 518 34 HOH HOH . 
I 5 HOH BBB 19 519 41 HOH HOH . 
I 5 HOH BBB 20 520 103 HOH HOH . 
I 5 HOH BBB 21 521 81 HOH HOH . 
I 5 HOH BBB 22 522 107 HOH HOH . 
I 5 HOH BBB 23 523 30 HOH HOH . 
I 5 HOH BBB 24 524 89 HOH HOH . 
I 5 HOH BBB 25 525 3 HOH HOH . 
I 5 HOH BBB 26 526 58 HOH HOH . 
I 5 HOH BBB 27 527 37 HOH HOH . 
I 5 HOH BBB 28 528 102 HOH HOH . 
I 5 HOH BBB 29 529 39 HOH HOH . 
I 5 HOH BBB 30 530 96 HOH HOH . 
J 5 HOH CCC 1 401 87 HOH HOH . 
J 5 HOH CCC 2 402 108 HOH HOH . 
J 5 HOH CCC 3 403 85 HOH HOH . 
J 5 HOH CCC 4 404 61 HOH HOH . 
J 5 HOH CCC 5 405 86 HOH HOH . 
J 5 HOH CCC 6 406 130 HOH HOH . 
J 5 HOH CCC 7 407 56 HOH HOH . 
J 5 HOH CCC 8 408 60 HOH HOH . 
J 5 HOH CCC 9 409 115 HOH HOH . 
J 5 HOH CCC 10 410 55 HOH HOH . 
J 5 HOH CCC 11 411 2 HOH HOH . 
J 5 HOH CCC 12 412 77 HOH HOH . 
J 5 HOH CCC 13 413 112 HOH HOH . 
J 5 HOH CCC 14 414 114 HOH HOH . 
J 5 HOH CCC 15 415 76 HOH HOH . 
J 5 HOH CCC 16 416 129 HOH HOH . 
J 5 HOH CCC 17 417 111 HOH HOH . 
J 5 HOH CCC 18 418 119 HOH HOH . 
J 5 HOH CCC 19 419 113 HOH HOH . 
J 5 HOH CCC 20 420 118 HOH HOH . 
J 5 HOH CCC 21 421 73 HOH HOH . 
J 5 HOH CCC 22 422 109 HOH HOH . 
J 5 HOH CCC 23 423 88 HOH HOH . 
J 5 HOH CCC 24 424 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -0.238 
_atom_site.Cartn_y               -4.424 
_atom_site.Cartn_z               13.219 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        61.93 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          AAA 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#