data_7Z4N # _model_server_result.job_id 4a0o8hDu3vEk0qV6WTgo1Q _model_server_result.datetime_utc '2024-11-25 05:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7Z4N # _exptl.entry_id 7Z4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z4N _cell.length_a 79.89 _cell.length_b 112.4 _cell.length_c 131.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 131.97 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 131.97 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 69 A ASN 69 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc2 A OG SER 71 A SER 71 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc3 A OD1 ASP 102 A ASP 102 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc4 A O THR 103 A THR 103 1_555 C K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc5 A OE2 GLU 257 A GLU 257 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 A OD2 ASP 281 A ASP 281 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc7 B MG MG . A MG 601 1_555 D O PYR . A PYR 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc8 B MG MG . A MG 601 1_555 D O3 PYR . A PYR 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc9 B MG MG . A MG 601 1_555 S O HOH . A HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc10 B MG MG . A MG 601 1_555 S O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc11 C K K . A K 602 1_555 S O HOH . A HOH 781 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? metalc ? metalc12 C K K . A K 602 1_555 S O HOH . A HOH 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 331 n n C OXT PYR sing 332 n n C CA PYR sing 333 n n OXT HXT PYR sing 334 n n CA O3 PYR doub 335 n n CA CB PYR sing 336 n n CB HB1 PYR sing 337 n n CB HB2 PYR sing 338 n n CB HB3 PYR sing 339 n n # _atom_sites.entry_id 7Z4N _atom_sites.fract_transf_matrix[1][1] 0.012517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 600 MG MG . C 3 K A 1 602 601 K K . D 4 PYR A 1 603 610 PYR PYR . E 5 PEG A 1 604 1301 PEG PEG . F 5 PEG A 1 605 1401 PEG PEG . G 6 GOL A 1 606 1501 GOL GOL . H 5 PEG A 1 607 1701 PEG PEG . I 5 PEG A 1 608 1801 PEG PEG . J 5 PEG A 1 609 1802 PEG PEG . K 5 PEG A 1 610 1803 PEG PEG . L 5 PEG A 1 611 1804 PEG PEG . M 6 GOL A 1 612 1901 GOL GOL . N 6 GOL A 1 613 2001 GOL GOL . O 6 GOL A 1 614 2101 GOL GOL . P 6 GOL A 1 615 2301 GOL GOL . Q 6 GOL A 1 616 2501 GOL GOL . R 7 MES A 1 617 2601 MES MES . S 8 HOH A 1 701 111 HOH HOH . S 8 HOH A 2 702 152 HOH HOH . S 8 HOH A 3 703 157 HOH HOH . S 8 HOH A 4 704 9 HOH HOH . S 8 HOH A 5 705 126 HOH HOH . S 8 HOH A 6 706 96 HOH HOH . S 8 HOH A 7 707 55 HOH HOH . S 8 HOH A 8 708 122 HOH HOH . S 8 HOH A 9 709 147 HOH HOH . S 8 HOH A 10 710 85 HOH HOH . S 8 HOH A 11 711 119 HOH HOH . S 8 HOH A 12 712 29 HOH HOH . S 8 HOH A 13 713 2 HOH HOH . S 8 HOH A 14 714 27 HOH HOH . S 8 HOH A 15 715 84 HOH HOH . S 8 HOH A 16 716 118 HOH HOH . S 8 HOH A 17 717 15 HOH HOH . S 8 HOH A 18 718 143 HOH HOH . S 8 HOH A 19 719 153 HOH HOH . S 8 HOH A 20 720 151 HOH HOH . S 8 HOH A 21 721 8 HOH HOH . S 8 HOH A 22 722 102 HOH HOH . S 8 HOH A 23 723 99 HOH HOH . S 8 HOH A 24 724 156 HOH HOH . S 8 HOH A 25 725 77 HOH HOH . S 8 HOH A 26 726 19 HOH HOH . S 8 HOH A 27 727 154 HOH HOH . S 8 HOH A 28 728 73 HOH HOH . S 8 HOH A 29 729 149 HOH HOH . S 8 HOH A 30 730 97 HOH HOH . S 8 HOH A 31 731 24 HOH HOH . S 8 HOH A 32 732 3 HOH HOH . S 8 HOH A 33 733 40 HOH HOH . S 8 HOH A 34 734 90 HOH HOH . S 8 HOH A 35 735 116 HOH HOH . S 8 HOH A 36 736 160 HOH HOH . S 8 HOH A 37 737 16 HOH HOH . S 8 HOH A 38 738 75 HOH HOH . S 8 HOH A 39 739 5 HOH HOH . S 8 HOH A 40 740 74 HOH HOH . S 8 HOH A 41 741 10 HOH HOH . S 8 HOH A 42 742 56 HOH HOH . S 8 HOH A 43 743 63 HOH HOH . S 8 HOH A 44 744 117 HOH HOH . S 8 HOH A 45 745 110 HOH HOH . S 8 HOH A 46 746 138 HOH HOH . S 8 HOH A 47 747 46 HOH HOH . S 8 HOH A 48 748 6 HOH HOH . S 8 HOH A 49 749 23 HOH HOH . S 8 HOH A 50 750 60 HOH HOH . S 8 HOH A 51 751 64 HOH HOH . S 8 HOH A 52 752 67 HOH HOH . S 8 HOH A 53 753 124 HOH HOH . S 8 HOH A 54 754 48 HOH HOH . S 8 HOH A 55 755 105 HOH HOH . S 8 HOH A 56 756 137 HOH HOH . S 8 HOH A 57 757 30 HOH HOH . S 8 HOH A 58 758 107 HOH HOH . S 8 HOH A 59 759 78 HOH HOH . S 8 HOH A 60 760 38 HOH HOH . S 8 HOH A 61 761 50 HOH HOH . S 8 HOH A 62 762 59 HOH HOH . S 8 HOH A 63 763 65 HOH HOH . S 8 HOH A 64 764 1 HOH HOH . S 8 HOH A 65 765 114 HOH HOH . S 8 HOH A 66 766 42 HOH HOH . S 8 HOH A 67 767 52 HOH HOH . S 8 HOH A 68 768 133 HOH HOH . S 8 HOH A 69 769 89 HOH HOH . S 8 HOH A 70 770 134 HOH HOH . S 8 HOH A 71 771 20 HOH HOH . S 8 HOH A 72 772 12 HOH HOH . S 8 HOH A 73 773 17 HOH HOH . S 8 HOH A 74 774 33 HOH HOH . S 8 HOH A 75 775 79 HOH HOH . S 8 HOH A 76 776 142 HOH HOH . S 8 HOH A 77 777 44 HOH HOH . S 8 HOH A 78 778 140 HOH HOH . S 8 HOH A 79 779 130 HOH HOH . S 8 HOH A 80 780 98 HOH HOH . S 8 HOH A 81 781 18 HOH HOH . S 8 HOH A 82 782 80 HOH HOH . S 8 HOH A 83 783 103 HOH HOH . S 8 HOH A 84 784 113 HOH HOH . S 8 HOH A 85 785 158 HOH HOH . S 8 HOH A 86 786 39 HOH HOH . S 8 HOH A 87 787 13 HOH HOH . S 8 HOH A 88 788 161 HOH HOH . S 8 HOH A 89 789 57 HOH HOH . S 8 HOH A 90 790 21 HOH HOH . S 8 HOH A 91 791 72 HOH HOH . S 8 HOH A 92 792 76 HOH HOH . S 8 HOH A 93 793 144 HOH HOH . S 8 HOH A 94 794 41 HOH HOH . S 8 HOH A 95 795 31 HOH HOH . S 8 HOH A 96 796 4 HOH HOH . S 8 HOH A 97 797 28 HOH HOH . S 8 HOH A 98 798 81 HOH HOH . S 8 HOH A 99 799 49 HOH HOH . S 8 HOH A 100 800 58 HOH HOH . S 8 HOH A 101 801 26 HOH HOH . S 8 HOH A 102 802 37 HOH HOH . S 8 HOH A 103 803 32 HOH HOH . S 8 HOH A 104 804 68 HOH HOH . S 8 HOH A 105 805 100 HOH HOH . S 8 HOH A 106 806 108 HOH HOH . S 8 HOH A 107 807 95 HOH HOH . S 8 HOH A 108 808 136 HOH HOH . S 8 HOH A 109 809 88 HOH HOH . S 8 HOH A 110 810 36 HOH HOH . S 8 HOH A 111 811 101 HOH HOH . S 8 HOH A 112 812 70 HOH HOH . S 8 HOH A 113 813 53 HOH HOH . S 8 HOH A 114 814 34 HOH HOH . S 8 HOH A 115 815 148 HOH HOH . S 8 HOH A 116 816 47 HOH HOH . S 8 HOH A 117 817 109 HOH HOH . S 8 HOH A 118 818 25 HOH HOH . S 8 HOH A 119 819 66 HOH HOH . S 8 HOH A 120 820 139 HOH HOH . S 8 HOH A 121 821 82 HOH HOH . S 8 HOH A 122 822 83 HOH HOH . S 8 HOH A 123 823 93 HOH HOH . S 8 HOH A 124 824 61 HOH HOH . S 8 HOH A 125 825 92 HOH HOH . S 8 HOH A 126 826 22 HOH HOH . S 8 HOH A 127 827 45 HOH HOH . S 8 HOH A 128 828 104 HOH HOH . S 8 HOH A 129 829 112 HOH HOH . S 8 HOH A 130 830 125 HOH HOH . S 8 HOH A 131 831 123 HOH HOH . S 8 HOH A 132 832 121 HOH HOH . S 8 HOH A 133 833 14 HOH HOH . S 8 HOH A 134 834 11 HOH HOH . S 8 HOH A 135 835 62 HOH HOH . S 8 HOH A 136 836 106 HOH HOH . S 8 HOH A 137 837 132 HOH HOH . S 8 HOH A 138 838 91 HOH HOH . S 8 HOH A 139 839 51 HOH HOH . S 8 HOH A 140 840 128 HOH HOH . S 8 HOH A 141 841 7 HOH HOH . S 8 HOH A 142 842 162 HOH HOH . S 8 HOH A 143 843 129 HOH HOH . S 8 HOH A 144 844 135 HOH HOH . S 8 HOH A 145 845 145 HOH HOH . S 8 HOH A 146 846 54 HOH HOH . S 8 HOH A 147 847 155 HOH HOH . S 8 HOH A 148 848 131 HOH HOH . S 8 HOH A 149 849 94 HOH HOH . S 8 HOH A 150 850 87 HOH HOH . S 8 HOH A 151 851 150 HOH HOH . S 8 HOH A 152 852 71 HOH HOH . S 8 HOH A 153 853 159 HOH HOH . S 8 HOH A 154 854 120 HOH HOH . S 8 HOH A 155 855 69 HOH HOH . S 8 HOH A 156 856 86 HOH HOH . S 8 HOH A 157 857 35 HOH HOH . S 8 HOH A 158 858 141 HOH HOH . S 8 HOH A 159 859 127 HOH HOH . S 8 HOH A 160 860 146 HOH HOH . S 8 HOH A 161 861 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . D 4 13.441 8.104 31.05 1 38.13 ? C PYR 603 A 1 HETATM 2 O O PYR . . . D 4 14.402 7.405 30.656 1 32.15 ? O PYR 603 A 1 HETATM 3 O OXT PYR . . . D 4 12.432 7.525 31.563 1 33.6 ? OXT PYR 603 A 1 HETATM 4 C CA PYR . . . D 4 13.505 9.631 30.873 1 45.82 ? CA PYR 603 A 1 HETATM 5 O O3 PYR . . . D 4 14.547 10.168 30.705 1 36.83 ? O3 PYR 603 A 1 HETATM 6 C CB PYR . . . D 4 12.211 10.448 30.885 1 35.11 ? CB PYR 603 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #