data_7Z4V # _model_server_result.job_id In0EUwhcB8oA9ewFw3iHyw _model_server_result.datetime_utc '2024-11-22 22:53:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7Z4V # _exptl.entry_id 7Z4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.56 _cell.angle_gamma 90 _cell.entry_id 7Z4V _cell.length_a 126.2 _cell.length_b 46.413 _cell.length_c 57.954 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 175 A ASN 173 1_555 A N TPO 176 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C TPO 176 A TPO 174 1_555 A N PHE 177 A PHE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7Z4V _atom_sites.fract_transf_matrix[1][1] 0.007924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000077 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IB5 A 1 301 301 IB5 XXX . C 3 EDO A 1 302 401 EDO EDO . D 4 HOH A 1 401 25 HOH HOH . D 4 HOH A 2 402 77 HOH HOH . D 4 HOH A 3 403 171 HOH HOH . D 4 HOH A 4 404 197 HOH HOH . D 4 HOH A 5 405 166 HOH HOH . D 4 HOH A 6 406 193 HOH HOH . D 4 HOH A 7 407 46 HOH HOH . D 4 HOH A 8 408 72 HOH HOH . D 4 HOH A 9 409 3 HOH HOH . D 4 HOH A 10 410 90 HOH HOH . D 4 HOH A 11 411 145 HOH HOH . D 4 HOH A 12 412 67 HOH HOH . D 4 HOH A 13 413 12 HOH HOH . D 4 HOH A 14 414 134 HOH HOH . D 4 HOH A 15 415 61 HOH HOH . D 4 HOH A 16 416 170 HOH HOH . D 4 HOH A 17 417 8 HOH HOH . D 4 HOH A 18 418 98 HOH HOH . D 4 HOH A 19 419 39 HOH HOH . D 4 HOH A 20 420 66 HOH HOH . D 4 HOH A 21 421 44 HOH HOH . D 4 HOH A 22 422 7 HOH HOH . D 4 HOH A 23 423 70 HOH HOH . D 4 HOH A 24 424 102 HOH HOH . D 4 HOH A 25 425 106 HOH HOH . D 4 HOH A 26 426 18 HOH HOH . D 4 HOH A 27 427 68 HOH HOH . D 4 HOH A 28 428 175 HOH HOH . D 4 HOH A 29 429 132 HOH HOH . D 4 HOH A 30 430 180 HOH HOH . D 4 HOH A 31 431 78 HOH HOH . D 4 HOH A 32 432 4 HOH HOH . D 4 HOH A 33 433 27 HOH HOH . D 4 HOH A 34 434 30 HOH HOH . D 4 HOH A 35 435 128 HOH HOH . D 4 HOH A 36 436 162 HOH HOH . D 4 HOH A 37 437 200 HOH HOH . D 4 HOH A 38 438 165 HOH HOH . D 4 HOH A 39 439 6 HOH HOH . D 4 HOH A 40 440 104 HOH HOH . D 4 HOH A 41 441 110 HOH HOH . D 4 HOH A 42 442 38 HOH HOH . D 4 HOH A 43 443 120 HOH HOH . D 4 HOH A 44 444 29 HOH HOH . D 4 HOH A 45 445 137 HOH HOH . D 4 HOH A 46 446 192 HOH HOH . D 4 HOH A 47 447 5 HOH HOH . D 4 HOH A 48 448 174 HOH HOH . D 4 HOH A 49 449 179 HOH HOH . D 4 HOH A 50 450 49 HOH HOH . D 4 HOH A 51 451 158 HOH HOH . D 4 HOH A 52 452 19 HOH HOH . D 4 HOH A 53 453 136 HOH HOH . D 4 HOH A 54 454 31 HOH HOH . D 4 HOH A 55 455 196 HOH HOH . D 4 HOH A 56 456 94 HOH HOH . D 4 HOH A 57 457 79 HOH HOH . D 4 HOH A 58 458 37 HOH HOH . D 4 HOH A 59 459 157 HOH HOH . D 4 HOH A 60 460 24 HOH HOH . D 4 HOH A 61 461 51 HOH HOH . D 4 HOH A 62 462 124 HOH HOH . D 4 HOH A 63 463 63 HOH HOH . D 4 HOH A 64 464 76 HOH HOH . D 4 HOH A 65 465 173 HOH HOH . D 4 HOH A 66 466 91 HOH HOH . D 4 HOH A 67 467 1 HOH HOH . D 4 HOH A 68 468 118 HOH HOH . D 4 HOH A 69 469 130 HOH HOH . D 4 HOH A 70 470 43 HOH HOH . D 4 HOH A 71 471 50 HOH HOH . D 4 HOH A 72 472 96 HOH HOH . D 4 HOH A 73 473 52 HOH HOH . D 4 HOH A 74 474 40 HOH HOH . D 4 HOH A 75 475 65 HOH HOH . D 4 HOH A 76 476 133 HOH HOH . D 4 HOH A 77 477 33 HOH HOH . D 4 HOH A 78 478 140 HOH HOH . D 4 HOH A 79 479 21 HOH HOH . D 4 HOH A 80 480 100 HOH HOH . D 4 HOH A 81 481 119 HOH HOH . D 4 HOH A 82 482 138 HOH HOH . D 4 HOH A 83 483 85 HOH HOH . D 4 HOH A 84 484 75 HOH HOH . D 4 HOH A 85 485 148 HOH HOH . D 4 HOH A 86 486 26 HOH HOH . D 4 HOH A 87 487 111 HOH HOH . D 4 HOH A 88 488 187 HOH HOH . D 4 HOH A 89 489 178 HOH HOH . D 4 HOH A 90 490 57 HOH HOH . D 4 HOH A 91 491 32 HOH HOH . D 4 HOH A 92 492 146 HOH HOH . D 4 HOH A 93 493 42 HOH HOH . D 4 HOH A 94 494 69 HOH HOH . D 4 HOH A 95 495 71 HOH HOH . D 4 HOH A 96 496 20 HOH HOH . D 4 HOH A 97 497 73 HOH HOH . D 4 HOH A 98 498 35 HOH HOH . D 4 HOH A 99 499 184 HOH HOH . D 4 HOH A 100 500 54 HOH HOH . D 4 HOH A 101 501 172 HOH HOH . D 4 HOH A 102 502 105 HOH HOH . D 4 HOH A 103 503 36 HOH HOH . D 4 HOH A 104 504 190 HOH HOH . D 4 HOH A 105 505 186 HOH HOH . D 4 HOH A 106 506 74 HOH HOH . D 4 HOH A 107 507 108 HOH HOH . D 4 HOH A 108 508 155 HOH HOH . D 4 HOH A 109 509 95 HOH HOH . D 4 HOH A 110 510 13 HOH HOH . D 4 HOH A 111 511 107 HOH HOH . D 4 HOH A 112 512 116 HOH HOH . D 4 HOH A 113 513 144 HOH HOH . D 4 HOH A 114 514 109 HOH HOH . D 4 HOH A 115 515 2 HOH HOH . D 4 HOH A 116 516 97 HOH HOH . D 4 HOH A 117 517 9 HOH HOH . D 4 HOH A 118 518 115 HOH HOH . D 4 HOH A 119 519 14 HOH HOH . D 4 HOH A 120 520 154 HOH HOH . D 4 HOH A 121 521 87 HOH HOH . D 4 HOH A 122 522 59 HOH HOH . D 4 HOH A 123 523 151 HOH HOH . D 4 HOH A 124 524 23 HOH HOH . D 4 HOH A 125 525 176 HOH HOH . D 4 HOH A 126 526 185 HOH HOH . D 4 HOH A 127 527 28 HOH HOH . D 4 HOH A 128 528 163 HOH HOH . D 4 HOH A 129 529 167 HOH HOH . D 4 HOH A 130 530 17 HOH HOH . D 4 HOH A 131 531 195 HOH HOH . D 4 HOH A 132 532 10 HOH HOH . D 4 HOH A 133 533 11 HOH HOH . D 4 HOH A 134 534 121 HOH HOH . D 4 HOH A 135 535 122 HOH HOH . D 4 HOH A 136 536 159 HOH HOH . D 4 HOH A 137 537 41 HOH HOH . D 4 HOH A 138 538 182 HOH HOH . D 4 HOH A 139 539 83 HOH HOH . D 4 HOH A 140 540 103 HOH HOH . D 4 HOH A 141 541 114 HOH HOH . D 4 HOH A 142 542 88 HOH HOH . D 4 HOH A 143 543 189 HOH HOH . D 4 HOH A 144 544 125 HOH HOH . D 4 HOH A 145 545 191 HOH HOH . D 4 HOH A 146 546 139 HOH HOH . D 4 HOH A 147 547 135 HOH HOH . D 4 HOH A 148 548 64 HOH HOH . D 4 HOH A 149 549 152 HOH HOH . D 4 HOH A 150 550 58 HOH HOH . D 4 HOH A 151 551 117 HOH HOH . D 4 HOH A 152 552 147 HOH HOH . D 4 HOH A 153 553 53 HOH HOH . D 4 HOH A 154 554 89 HOH HOH . D 4 HOH A 155 555 141 HOH HOH . D 4 HOH A 156 556 86 HOH HOH . D 4 HOH A 157 557 92 HOH HOH . D 4 HOH A 158 558 56 HOH HOH . D 4 HOH A 159 559 142 HOH HOH . D 4 HOH A 160 560 169 HOH HOH . D 4 HOH A 161 561 131 HOH HOH . D 4 HOH A 162 562 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 30.257 1.685 23.335 1 21.99 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . C 3 29.339 0.967 24.156 1 22.12 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . C 3 30.131 3.231 23.542 1 22.28 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . C 3 30.517 3.613 24.864 1 21.98 ? O2 EDO 302 A 1 HETATM 5 H H11 EDO . . . C 3 31.285 1.359 23.483 0 21.99 ? H11 EDO 302 A 1 HETATM 6 H H12 EDO . . . C 3 29.984 1.411 22.317 0 21.99 ? H12 EDO 302 A 1 HETATM 7 H HO1 EDO . . . C 3 28.856 1.628 24.719 0 22.12 ? HO1 EDO 302 A 1 HETATM 8 H H21 EDO . . . C 3 30.828 3.761 22.894 0 22.28 ? H21 EDO 302 A 1 HETATM 9 H H22 EDO . . . C 3 29.133 3.581 23.282 0 22.28 ? H22 EDO 302 A 1 HETATM 10 H HO2 EDO . . . C 3 30.518 4.606 24.895 0 21.98 ? HO2 EDO 302 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #