data_7Z55 # _model_server_result.job_id fF1cScXFuUU60GJ1Kf1tRA _model_server_result.datetime_utc '2024-10-10 22:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7Z55 # _exptl.entry_id 7Z55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z55 _cell.length_a 42.975 _cell.length_b 79.531 _cell.length_c 95.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 AAA CYS 55 1_555 A SG CYS 155 AAA CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 56 AAA CYS 56 1_555 A SG CYS 164 AAA CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 55 BBB CYS 55 1_555 B SG CYS 155 BBB CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 56 BBB CYS 56 1_555 B SG CYS 164 BBB CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A C ILE 51 AAA ILE 51 1_555 A N MSE 52 AAA MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C MSE 52 AAA MSE 52 1_555 A N PHE 53 AAA PHE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLU 72 AAA GLU 72 1_555 A N MSE 73 AAA MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale4 A C MSE 73 AAA MSE 73 1_555 A N ASP 74 AAA ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C GLY 107 AAA GLY 107 1_555 A N MSE 108 AAA MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 108 AAA MSE 108 1_555 A N SER 109 AAA SER 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale7 B C ILE 51 BBB ILE 51 1_555 B N MSE 52 BBB MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 B C MSE 52 BBB MSE 52 1_555 B N PHE 53 BBB PHE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale9 B C GLU 72 BBB GLU 72 1_555 B N MSE 73 BBB MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 B C MSE 73 BBB MSE 73 1_555 B N ASP 74 BBB ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C GLY 107 BBB GLY 107 1_555 B N MSE 108 BBB MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 B C MSE 108 BBB MSE 108 1_555 B N SER 109 BBB SER 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 305 n n P O2 PO4 sing 306 n n P O3 PO4 sing 307 n n P O4 PO4 sing 308 n n # _atom_sites.entry_id 7Z55 _atom_sites.fract_transf_matrix[1][1] 0.023269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PO4 AAA 1 301 1 PO4 PO4 . E 4 ACT BBB 1 301 1 ACT ACT . F 5 HOH AAA 1 401 32 HOH HOH . F 5 HOH AAA 2 402 21 HOH HOH . F 5 HOH AAA 3 403 34 HOH HOH . F 5 HOH AAA 4 404 16 HOH HOH . F 5 HOH AAA 5 405 11 HOH HOH . F 5 HOH AAA 6 406 26 HOH HOH . F 5 HOH AAA 7 407 8 HOH HOH . F 5 HOH AAA 8 408 27 HOH HOH . F 5 HOH AAA 9 409 13 HOH HOH . F 5 HOH AAA 10 410 1 HOH HOH . F 5 HOH AAA 11 411 36 HOH HOH . F 5 HOH AAA 12 412 17 HOH HOH . F 5 HOH AAA 13 413 24 HOH HOH . F 5 HOH AAA 14 414 35 HOH HOH . G 5 HOH BBB 1 401 19 HOH HOH . G 5 HOH BBB 2 402 3 HOH HOH . G 5 HOH BBB 3 403 20 HOH HOH . G 5 HOH BBB 4 404 30 HOH HOH . G 5 HOH BBB 5 405 31 HOH HOH . G 5 HOH BBB 6 406 25 HOH HOH . G 5 HOH BBB 7 407 14 HOH HOH . G 5 HOH BBB 8 408 29 HOH HOH . G 5 HOH BBB 9 409 18 HOH HOH . G 5 HOH BBB 10 410 23 HOH HOH . G 5 HOH BBB 11 411 22 HOH HOH . G 5 HOH BBB 12 412 9 HOH HOH . G 5 HOH BBB 13 413 15 HOH HOH . G 5 HOH BBB 14 414 33 HOH HOH . G 5 HOH BBB 15 415 28 HOH HOH . G 5 HOH BBB 16 416 10 HOH HOH . H 5 HOH CCC 1 101 7 HOH HOH . H 5 HOH CCC 2 102 5 HOH HOH . H 5 HOH CCC 3 103 6 HOH HOH . H 5 HOH CCC 4 104 4 HOH HOH . H 5 HOH CCC 5 105 12 HOH HOH . H 5 HOH CCC 6 106 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 31.628 -5.843 0.05 1 44.92 0 P PO4 301 AAA 1 HETATM 2 O O1 PO4 . . . D 3 31.017 -6.82 -0.972 1 44.47 0 O1 PO4 301 AAA 1 HETATM 3 O O2 PO4 . . . D 3 30.579 -5.44 1.061 1 38.01 0 O2 PO4 301 AAA 1 HETATM 4 O O3 PO4 . . . D 3 32.148 -4.609 -0.668 1 42.57 0 O3 PO4 301 AAA 1 HETATM 5 O O4 PO4 . . . D 3 32.754 -6.525 0.8 1 47.67 0 O4 PO4 301 AAA 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #