data_7Z57 # _model_server_result.job_id pLs5oZtGW2iYFlxVN3Z7ww _model_server_result.datetime_utc '2025-01-10 12:18:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":612}' # _entry.id 7Z57 # _exptl.entry_id 7Z57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105 _cell.angle_gamma 90 _cell.entry_id 7Z57 _cell.length_a 185.89 _cell.length_b 38.769 _cell.length_c 96.446 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 53 1_555 A SG CYS 61 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 74 A CYS 75 1_555 A SG CYS 90 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 89 A CYS 90 1_555 A SG CYS 100 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf4 A SG CYS 123 A CYS 124 1_555 A SG CYS 168 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 A SG CYS 167 A CYS 168 1_555 A SG CYS 176 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 199 A CYS 200 1_555 A SG CYS 245 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 A SG CYS 244 A CYS 245 1_555 A SG CYS 252 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf8 A SG CYS 264 A CYS 265 1_555 A SG CYS 278 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf9 A SG CYS 277 A CYS 278 1_555 A SG CYS 288 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf10 A SG CYS 315 A CYS 316 1_555 A SG CYS 360 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf11 A SG CYS 359 A CYS 360 1_555 A SG CYS 368 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf12 A SG CYS 391 A CYS 392 1_555 A SG CYS 437 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf13 A SG CYS 436 A CYS 437 1_555 A SG CYS 447 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf14 A SG CYS 460 A CYS 461 1_555 A SG CYS 476 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf15 A SG CYS 475 A CYS 476 1_555 A SG CYS 486 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf16 A SG CYS 513 A CYS 514 1_555 A SG CYS 558 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf17 A SG CYS 557 A CYS 558 1_555 A SG CYS 566 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 257 n n C1 H11 MPD sing 258 n n C1 H12 MPD sing 259 n n C1 H13 MPD sing 260 n n C2 O2 MPD sing 261 n n C2 CM MPD sing 262 n n C2 C3 MPD sing 263 n n O2 HO2 MPD sing 264 n n CM HM1 MPD sing 265 n n CM HM2 MPD sing 266 n n CM HM3 MPD sing 267 n n C3 C4 MPD sing 268 n n C3 H31 MPD sing 269 n n C3 H32 MPD sing 270 n n C4 O4 MPD sing 271 n n C4 C5 MPD sing 272 n n C4 H4 MPD sing 273 n n O4 HO4 MPD sing 274 n n C5 H51 MPD sing 275 n n C5 H52 MPD sing 276 n n C5 H53 MPD sing 277 n n # _atom_sites.entry_id 7Z57 _atom_sites.fract_transf_matrix[1][1] 0.00538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001441 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IGB A 1 601 602 IGB LIG . C 2 IGB A 1 602 603 IGB LIG . D 3 MPD A 1 603 605 MPD MPD . E 4 MYR A 1 604 606 MYR MYR . F 4 MYR A 1 605 607 MYR MYR . G 4 MYR A 1 606 608 MYR MYR . H 3 MPD A 1 607 609 MPD MPD . I 3 MPD A 1 608 610 MPD MPD . J 3 MPD A 1 609 611 MPD MPD . K 4 MYR A 1 610 612 MYR MYR . L 3 MPD A 1 611 614 MPD MPD . M 3 MPD A 1 612 615 MPD MPD . N 5 BR A 1 614 1 BR BR . O 6 HOH A 1 701 19 HOH HOH . O 6 HOH A 2 702 22 HOH HOH . O 6 HOH A 3 703 30 HOH HOH . O 6 HOH A 4 704 27 HOH HOH . O 6 HOH A 5 705 1 HOH HOH . O 6 HOH A 6 706 9 HOH HOH . O 6 HOH A 7 707 6 HOH HOH . O 6 HOH A 8 708 8 HOH HOH . O 6 HOH A 9 709 13 HOH HOH . O 6 HOH A 10 710 28 HOH HOH . O 6 HOH A 11 711 10 HOH HOH . O 6 HOH A 12 712 24 HOH HOH . O 6 HOH A 13 713 23 HOH HOH . O 6 HOH A 14 714 4 HOH HOH . O 6 HOH A 15 715 32 HOH HOH . O 6 HOH A 16 716 20 HOH HOH . O 6 HOH A 17 717 2 HOH HOH . O 6 HOH A 18 718 15 HOH HOH . O 6 HOH A 19 719 5 HOH HOH . O 6 HOH A 20 720 7 HOH HOH . O 6 HOH A 21 721 14 HOH HOH . O 6 HOH A 22 722 16 HOH HOH . O 6 HOH A 23 723 18 HOH HOH . O 6 HOH A 24 724 11 HOH HOH . O 6 HOH A 25 725 21 HOH HOH . O 6 HOH A 26 726 12 HOH HOH . O 6 HOH A 27 727 3 HOH HOH . O 6 HOH A 28 728 34 HOH HOH . O 6 HOH A 29 729 25 HOH HOH . O 6 HOH A 30 730 33 HOH HOH . O 6 HOH A 31 731 31 HOH HOH . O 6 HOH A 32 732 29 HOH HOH . O 6 HOH A 33 733 26 HOH HOH . O 6 HOH A 34 734 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . M 3 -36.447 -15.004 -9.463 1 47.27 ? C1 MPD 612 A 1 HETATM 2 C C2 MPD . . . M 3 -36.465 -13.558 -8.997 1 47.86 ? C2 MPD 612 A 1 HETATM 3 O O2 MPD . . . M 3 -37.843 -13.185 -8.859 1 45.61 ? O2 MPD 612 A 1 HETATM 4 C CM MPD . . . M 3 -35.861 -12.637 -10.04 1 38.06 ? CM MPD 612 A 1 HETATM 5 C C3 MPD . . . M 3 -35.792 -13.388 -7.632 1 46.26 ? C3 MPD 612 A 1 HETATM 6 C C4 MPD . . . M 3 -34.277 -13.395 -7.582 1 50.56 ? C4 MPD 612 A 1 HETATM 7 O O4 MPD . . . M 3 -33.726 -14.155 -8.655 1 57.38 ? O4 MPD 612 A 1 HETATM 8 C C5 MPD . . . M 3 -33.665 -12.025 -7.581 1 59.5 ? C5 MPD 612 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #