data_7Z5B # _model_server_result.job_id wmfgHXY2mBSB5Bjyvbjihw _model_server_result.datetime_utc '2025-07-08 07:46:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 7Z5B # _exptl.entry_id 7Z5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z5B _cell.length_a 80.454 _cell.length_b 80.632 _cell.length_c 165.925 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,H 1 1 B,E,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 F NI NI . B NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc2 A NE2 HIS 275 A HIS 282 1_555 F NI NI . B NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc3 B NE2 HIS 269 B HIS 276 1_555 F NI NI . B NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc4 B NE2 HIS 275 B HIS 282 1_555 F NI NI . B NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc5 F NI NI . B NI 402 1_555 C NE2 HIS 269 C HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 F NI NI . B NI 402 1_555 C NE2 HIS 275 C HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Z5B _atom_sites.fract_transf_matrix[1][1] 0.012429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IFT A 1 401 401 IFT LIG . E 2 IFT B 1 401 401 IFT LIG . F 3 NI B 1 402 1 NI NI . G 2 IFT C 1 401 401 IFT LIG . H 4 HOH A 1 501 64 HOH HOH . H 4 HOH A 2 502 13 HOH HOH . H 4 HOH A 3 503 65 HOH HOH . H 4 HOH A 4 504 1 HOH HOH . H 4 HOH A 5 505 35 HOH HOH . H 4 HOH A 6 506 11 HOH HOH . H 4 HOH A 7 507 2 HOH HOH . H 4 HOH A 8 508 39 HOH HOH . H 4 HOH A 9 509 9 HOH HOH . H 4 HOH A 10 510 38 HOH HOH . H 4 HOH A 11 511 66 HOH HOH . H 4 HOH A 12 512 41 HOH HOH . H 4 HOH A 13 513 44 HOH HOH . H 4 HOH A 14 514 42 HOH HOH . H 4 HOH A 15 515 10 HOH HOH . H 4 HOH A 16 516 58 HOH HOH . H 4 HOH A 17 517 51 HOH HOH . H 4 HOH A 18 518 7 HOH HOH . H 4 HOH A 19 519 15 HOH HOH . H 4 HOH A 20 520 81 HOH HOH . H 4 HOH A 21 521 59 HOH HOH . H 4 HOH A 22 522 60 HOH HOH . H 4 HOH A 23 523 6 HOH HOH . H 4 HOH A 24 524 5 HOH HOH . H 4 HOH A 25 525 37 HOH HOH . H 4 HOH A 26 526 36 HOH HOH . H 4 HOH A 27 527 40 HOH HOH . H 4 HOH A 28 528 57 HOH HOH . I 4 HOH B 1 501 22 HOH HOH . I 4 HOH B 2 502 24 HOH HOH . I 4 HOH B 3 503 32 HOH HOH . I 4 HOH B 4 504 62 HOH HOH . I 4 HOH B 5 505 78 HOH HOH . I 4 HOH B 6 506 83 HOH HOH . I 4 HOH B 7 507 68 HOH HOH . I 4 HOH B 8 508 69 HOH HOH . I 4 HOH B 9 509 26 HOH HOH . I 4 HOH B 10 510 70 HOH HOH . I 4 HOH B 11 511 23 HOH HOH . I 4 HOH B 12 512 80 HOH HOH . I 4 HOH B 13 513 31 HOH HOH . I 4 HOH B 14 514 79 HOH HOH . I 4 HOH B 15 515 25 HOH HOH . I 4 HOH B 16 516 21 HOH HOH . I 4 HOH B 17 517 71 HOH HOH . I 4 HOH B 18 518 27 HOH HOH . I 4 HOH B 19 519 67 HOH HOH . I 4 HOH B 20 520 16 HOH HOH . I 4 HOH B 21 521 28 HOH HOH . I 4 HOH B 22 522 45 HOH HOH . I 4 HOH B 23 523 82 HOH HOH . I 4 HOH B 24 524 46 HOH HOH . I 4 HOH B 25 525 19 HOH HOH . J 4 HOH C 1 501 73 HOH HOH . J 4 HOH C 2 502 14 HOH HOH . J 4 HOH C 3 503 77 HOH HOH . J 4 HOH C 4 504 48 HOH HOH . J 4 HOH C 5 505 54 HOH HOH . J 4 HOH C 6 506 84 HOH HOH . J 4 HOH C 7 507 33 HOH HOH . J 4 HOH C 8 508 56 HOH HOH . J 4 HOH C 9 509 74 HOH HOH . J 4 HOH C 10 510 63 HOH HOH . J 4 HOH C 11 511 49 HOH HOH . J 4 HOH C 12 512 61 HOH HOH . J 4 HOH C 13 513 72 HOH HOH . J 4 HOH C 14 514 75 HOH HOH . J 4 HOH C 15 515 55 HOH HOH . J 4 HOH C 16 516 76 HOH HOH . J 4 HOH C 17 517 52 HOH HOH . J 4 HOH C 18 518 12 HOH HOH . J 4 HOH C 19 519 8 HOH HOH . J 4 HOH C 20 520 50 HOH HOH . J 4 HOH C 21 521 43 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -24.163 _atom_site.Cartn_y -19.074 _atom_site.Cartn_z 28.496 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #