data_7Z5R
#
_model_server_result.job_id            co2S7BoBIEY-UbSltUTe9g 
_model_server_result.datetime_utc      '2025-07-07 16:57:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z5r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    7Z5R 
#
_exptl.entry_id    7Z5R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Z5R 
_cell.length_a            81.459 
_cell.length_b            81.533 
_cell.length_c            170.145 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Z5R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,H 1 1 
B,F,I 2 1 
C,G,J 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 A NE2 HIS 275 A HIS 282 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc3 E NI NI . A NI 402 1_555 B NE2 HIS 269 B HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 E NI NI . A NI 402 1_555 B NE2 HIS 275 B HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc5 E NI NI . A NI 402 1_555 C NE2 HIS 269 C HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc6 E NI NI . A NI 402 1_555 C NE2 HIS 275 C HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Z5R 
_atom_sites.fract_transf_matrix[1][1]    0.012276 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005877 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 IGQ A 1 401 401 IGQ LIG . 
E 3 NI A 1 402 1 NI NI . 
F 2 IGQ B 1 401 401 IGQ LIG . 
G 2 IGQ C 1 401 401 IGQ LIG . 
H 4 HOH A 1 501 7 HOH HOH . 
H 4 HOH A 2 502 69 HOH HOH . 
H 4 HOH A 3 503 8 HOH HOH . 
H 4 HOH A 4 504 104 HOH HOH . 
H 4 HOH A 5 505 70 HOH HOH . 
H 4 HOH A 6 506 17 HOH HOH . 
H 4 HOH A 7 507 39 HOH HOH . 
H 4 HOH A 8 508 52 HOH HOH . 
H 4 HOH A 9 509 50 HOH HOH . 
H 4 HOH A 10 510 32 HOH HOH . 
H 4 HOH A 11 511 66 HOH HOH . 
H 4 HOH A 12 512 15 HOH HOH . 
H 4 HOH A 13 513 109 HOH HOH . 
H 4 HOH A 14 514 118 HOH HOH . 
H 4 HOH A 15 515 20 HOH HOH . 
H 4 HOH A 16 516 47 HOH HOH . 
H 4 HOH A 17 517 11 HOH HOH . 
H 4 HOH A 18 518 28 HOH HOH . 
H 4 HOH A 19 519 85 HOH HOH . 
H 4 HOH A 20 520 92 HOH HOH . 
H 4 HOH A 21 521 48 HOH HOH . 
H 4 HOH A 22 522 57 HOH HOH . 
H 4 HOH A 23 523 73 HOH HOH . 
H 4 HOH A 24 524 71 HOH HOH . 
H 4 HOH A 25 525 36 HOH HOH . 
H 4 HOH A 26 526 24 HOH HOH . 
H 4 HOH A 27 527 51 HOH HOH . 
H 4 HOH A 28 528 108 HOH HOH . 
H 4 HOH A 29 529 64 HOH HOH . 
H 4 HOH A 30 530 72 HOH HOH . 
H 4 HOH A 31 531 34 HOH HOH . 
H 4 HOH A 32 532 107 HOH HOH . 
H 4 HOH A 33 533 63 HOH HOH . 
H 4 HOH A 34 534 19 HOH HOH . 
H 4 HOH A 35 535 21 HOH HOH . 
H 4 HOH A 36 536 74 HOH HOH . 
H 4 HOH A 37 537 29 HOH HOH . 
H 4 HOH A 38 538 121 HOH HOH . 
H 4 HOH A 39 539 55 HOH HOH . 
H 4 HOH A 40 540 115 HOH HOH . 
H 4 HOH A 41 541 60 HOH HOH . 
H 4 HOH A 42 542 44 HOH HOH . 
H 4 HOH A 43 543 91 HOH HOH . 
H 4 HOH A 44 544 119 HOH HOH . 
H 4 HOH A 45 545 116 HOH HOH . 
H 4 HOH A 46 546 6 HOH HOH . 
H 4 HOH A 47 547 120 HOH HOH . 
H 4 HOH A 48 548 16 HOH HOH . 
H 4 HOH A 49 549 65 HOH HOH . 
H 4 HOH A 50 550 114 HOH HOH . 
H 4 HOH A 51 551 117 HOH HOH . 
H 4 HOH A 52 552 18 HOH HOH . 
H 4 HOH A 53 553 111 HOH HOH . 
H 4 HOH A 54 554 4 HOH HOH . 
H 4 HOH A 55 555 1 HOH HOH . 
H 4 HOH A 56 556 23 HOH HOH . 
H 4 HOH A 57 557 68 HOH HOH . 
H 4 HOH A 58 558 13 HOH HOH . 
H 4 HOH A 59 559 93 HOH HOH . 
H 4 HOH A 60 560 113 HOH HOH . 
H 4 HOH A 61 561 12 HOH HOH . 
H 4 HOH A 62 562 42 HOH HOH . 
H 4 HOH A 63 563 123 HOH HOH . 
H 4 HOH A 64 564 3 HOH HOH . 
H 4 HOH A 65 565 122 HOH HOH . 
H 4 HOH A 66 566 112 HOH HOH . 
H 4 HOH A 67 567 46 HOH HOH . 
H 4 HOH A 68 568 110 HOH HOH . 
I 4 HOH B 1 501 100 HOH HOH . 
I 4 HOH B 2 502 86 HOH HOH . 
I 4 HOH B 3 503 99 HOH HOH . 
I 4 HOH B 4 504 98 HOH HOH . 
I 4 HOH B 5 505 9 HOH HOH . 
I 4 HOH B 6 506 31 HOH HOH . 
I 4 HOH B 7 507 37 HOH HOH . 
I 4 HOH B 8 508 101 HOH HOH . 
I 4 HOH B 9 509 61 HOH HOH . 
I 4 HOH B 10 510 105 HOH HOH . 
I 4 HOH B 11 511 96 HOH HOH . 
I 4 HOH B 12 512 103 HOH HOH . 
I 4 HOH B 13 513 97 HOH HOH . 
I 4 HOH B 14 514 40 HOH HOH . 
I 4 HOH B 15 515 102 HOH HOH . 
I 4 HOH B 16 516 131 HOH HOH . 
I 4 HOH B 17 517 67 HOH HOH . 
I 4 HOH B 18 518 125 HOH HOH . 
I 4 HOH B 19 519 14 HOH HOH . 
I 4 HOH B 20 520 59 HOH HOH . 
I 4 HOH B 21 521 106 HOH HOH . 
I 4 HOH B 22 522 22 HOH HOH . 
I 4 HOH B 23 523 56 HOH HOH . 
J 4 HOH C 1 501 80 HOH HOH . 
J 4 HOH C 2 502 10 HOH HOH . 
J 4 HOH C 3 503 77 HOH HOH . 
J 4 HOH C 4 504 79 HOH HOH . 
J 4 HOH C 5 505 78 HOH HOH . 
J 4 HOH C 6 506 5 HOH HOH . 
J 4 HOH C 7 507 87 HOH HOH . 
J 4 HOH C 8 508 43 HOH HOH . 
J 4 HOH C 9 509 38 HOH HOH . 
J 4 HOH C 10 510 127 HOH HOH . 
J 4 HOH C 11 511 33 HOH HOH . 
J 4 HOH C 12 512 90 HOH HOH . 
J 4 HOH C 13 513 128 HOH HOH . 
J 4 HOH C 14 514 30 HOH HOH . 
J 4 HOH C 15 515 83 HOH HOH . 
J 4 HOH C 16 516 81 HOH HOH . 
J 4 HOH C 17 517 130 HOH HOH . 
J 4 HOH C 18 518 62 HOH HOH . 
J 4 HOH C 19 519 25 HOH HOH . 
J 4 HOH C 20 520 76 HOH HOH . 
J 4 HOH C 21 521 75 HOH HOH . 
J 4 HOH C 22 522 95 HOH HOH . 
J 4 HOH C 23 523 88 HOH HOH . 
J 4 HOH C 24 524 94 HOH HOH . 
J 4 HOH C 25 525 53 HOH HOH . 
J 4 HOH C 26 526 49 HOH HOH . 
J 4 HOH C 27 527 58 HOH HOH . 
J 4 HOH C 28 528 89 HOH HOH . 
J 4 HOH C 29 529 35 HOH HOH . 
J 4 HOH C 30 530 2 HOH HOH . 
J 4 HOH C 31 531 126 HOH HOH . 
J 4 HOH C 32 532 82 HOH HOH . 
J 4 HOH C 33 533 124 HOH HOH . 
J 4 HOH C 34 534 27 HOH HOH . 
J 4 HOH C 35 535 84 HOH HOH . 
J 4 HOH C 36 536 129 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               24.862 
_atom_site.Cartn_y               -20.767 
_atom_site.Cartn_z               -29.29 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.43 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#