data_7Z5Y # _model_server_result.job_id sWeFZ1MXZ2mtlSWw75YoNg _model_server_result.datetime_utc '2024-11-24 05:47:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 7Z5Y # _exptl.entry_id 7Z5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.27 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-muramic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.78 _cell.angle_gamma 90 _cell.entry_id 7Z5Y _cell.length_a 42.16 _cell.length_b 101.96 _cell.length_c 46.19 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E PB UDP . A UDP 402 1_555 F O1 MUB . C MUB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.553 ? covale ? covale2 B O3' 6HA 1 B 6HA 7 1_555 B P 6HC 2 B 6HC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? covale ? covale3 B O3' 6HC 2 B 6HC 8 1_555 B P 6HC 3 B 6HC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale4 B O3' 6HC 3 B 6HC 9 1_555 B P A9Z 4 B A9Z 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale5 B C7T A9Z 4 B A9Z 10 1_555 C SG CYS 3 C CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale6 C C ALA 1 C ALA 3 1_555 C N FGA 2 C FGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 C N ALA 1 C ALA 3 1_555 F C10 MUB . C MUB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 C CD FGA 2 C FGA 4 1_555 C N CYS 3 C CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale9 C C CYS 3 C CYS 5 1_555 C N DAL 4 C DAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 C C DAL 4 C DAL 6 1_555 C N DAL 5 C DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C11 H19 N O8' _chem_comp.formula_weight 293.27 _chem_comp.id MUB _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-muramic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetyl-muramic acid;N-ACETYLMURAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MUB sing 410 n n C2 C3 MUB sing 411 n n C3 C4 MUB sing 412 n n C4 C5 MUB sing 413 n n C5 C6 MUB sing 414 n n C7 C8 MUB sing 415 n n C9 C10 MUB sing 416 n n C9 C11 MUB sing 417 n n C1 O1 MUB sing 418 n n C3 O3 MUB sing 419 n n C9 O3 MUB sing 420 n n C4 O4 MUB sing 421 n n C1 O5 MUB sing 422 n n C5 O5 MUB sing 423 n n C6 O6 MUB sing 424 n n C7 O7 MUB doub 425 n n C10 O11 MUB sing 426 n n C10 O10 MUB doub 427 n n C2 N2 MUB sing 428 n n C7 N2 MUB sing 429 n n C1 H1 MUB sing 430 n n C2 H2 MUB sing 431 n n N2 HN2 MUB sing 432 n n C8 H81 MUB sing 433 n n C8 H82 MUB sing 434 n n C8 H83 MUB sing 435 n n C3 H3 MUB sing 436 n n C9 H9 MUB sing 437 n n C11 H111 MUB sing 438 n n C11 H112 MUB sing 439 n n C11 H113 MUB sing 440 n n C4 H4 MUB sing 441 n n C5 H5 MUB sing 442 n n C6 H61 MUB sing 443 n n C6 H62 MUB sing 444 n n O6 HO6 MUB sing 445 n n O4 HO4 MUB sing 446 n n O11 HO11 MUB sing 447 n n O1 HO1 MUB sing 448 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MUB a-D-GlcpNAc3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MUB MurNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7Z5Y _atom_sites.fract_transf_matrix[1][1] 0.023719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00538 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 401 401 GOL GOL . E 5 UDP A 1 402 1 UDP UDP . F 6 MUB C 1 101 2 MUB MUB . G 7 HOH A 1 501 82 HOH HOH . G 7 HOH A 2 502 129 HOH HOH . G 7 HOH A 3 503 79 HOH HOH . G 7 HOH A 4 504 23 HOH HOH . G 7 HOH A 5 505 130 HOH HOH . G 7 HOH A 6 506 120 HOH HOH . G 7 HOH A 7 507 105 HOH HOH . G 7 HOH A 8 508 50 HOH HOH . G 7 HOH A 9 509 101 HOH HOH . G 7 HOH A 10 510 68 HOH HOH . G 7 HOH A 11 511 60 HOH HOH . G 7 HOH A 12 512 126 HOH HOH . G 7 HOH A 13 513 38 HOH HOH . G 7 HOH A 14 514 128 HOH HOH . G 7 HOH A 15 515 59 HOH HOH . G 7 HOH A 16 516 28 HOH HOH . G 7 HOH A 17 517 134 HOH HOH . G 7 HOH A 18 518 49 HOH HOH . G 7 HOH A 19 519 39 HOH HOH . G 7 HOH A 20 520 41 HOH HOH . G 7 HOH A 21 521 9 HOH HOH . G 7 HOH A 22 522 75 HOH HOH . G 7 HOH A 23 523 46 HOH HOH . G 7 HOH A 24 524 77 HOH HOH . G 7 HOH A 25 525 20 HOH HOH . G 7 HOH A 26 526 57 HOH HOH . G 7 HOH A 27 527 84 HOH HOH . G 7 HOH A 28 528 4 HOH HOH . G 7 HOH A 29 529 52 HOH HOH . G 7 HOH A 30 530 24 HOH HOH . G 7 HOH A 31 531 61 HOH HOH . G 7 HOH A 32 532 69 HOH HOH . G 7 HOH A 33 533 93 HOH HOH . G 7 HOH A 34 534 89 HOH HOH . G 7 HOH A 35 535 83 HOH HOH . G 7 HOH A 36 536 78 HOH HOH . G 7 HOH A 37 537 65 HOH HOH . G 7 HOH A 38 538 10 HOH HOH . G 7 HOH A 39 539 53 HOH HOH . G 7 HOH A 40 540 122 HOH HOH . G 7 HOH A 41 541 54 HOH HOH . G 7 HOH A 42 542 62 HOH HOH . G 7 HOH A 43 543 131 HOH HOH . G 7 HOH A 44 544 48 HOH HOH . G 7 HOH A 45 545 18 HOH HOH . G 7 HOH A 46 546 72 HOH HOH . G 7 HOH A 47 547 11 HOH HOH . G 7 HOH A 48 548 15 HOH HOH . G 7 HOH A 49 549 88 HOH HOH . G 7 HOH A 50 550 114 HOH HOH . G 7 HOH A 51 551 51 HOH HOH . G 7 HOH A 52 552 47 HOH HOH . G 7 HOH A 53 553 22 HOH HOH . G 7 HOH A 54 554 74 HOH HOH . G 7 HOH A 55 555 31 HOH HOH . G 7 HOH A 56 556 100 HOH HOH . G 7 HOH A 57 557 112 HOH HOH . G 7 HOH A 58 558 29 HOH HOH . G 7 HOH A 59 559 91 HOH HOH . G 7 HOH A 60 560 25 HOH HOH . G 7 HOH A 61 561 76 HOH HOH . G 7 HOH A 62 562 102 HOH HOH . G 7 HOH A 63 563 45 HOH HOH . G 7 HOH A 64 564 66 HOH HOH . G 7 HOH A 65 565 2 HOH HOH . G 7 HOH A 66 566 73 HOH HOH . G 7 HOH A 67 567 43 HOH HOH . G 7 HOH A 68 568 67 HOH HOH . G 7 HOH A 69 569 35 HOH HOH . G 7 HOH A 70 570 8 HOH HOH . G 7 HOH A 71 571 86 HOH HOH . G 7 HOH A 72 572 135 HOH HOH . G 7 HOH A 73 573 110 HOH HOH . G 7 HOH A 74 574 107 HOH HOH . G 7 HOH A 75 575 103 HOH HOH . G 7 HOH A 76 576 124 HOH HOH . G 7 HOH A 77 577 19 HOH HOH . G 7 HOH A 78 578 13 HOH HOH . G 7 HOH A 79 579 6 HOH HOH . G 7 HOH A 80 580 42 HOH HOH . G 7 HOH A 81 581 125 HOH HOH . G 7 HOH A 82 582 36 HOH HOH . G 7 HOH A 83 583 58 HOH HOH . G 7 HOH A 84 584 97 HOH HOH . G 7 HOH A 85 585 70 HOH HOH . G 7 HOH A 86 586 33 HOH HOH . G 7 HOH A 87 587 117 HOH HOH . G 7 HOH A 88 588 94 HOH HOH . G 7 HOH A 89 589 133 HOH HOH . G 7 HOH A 90 590 32 HOH HOH . G 7 HOH A 91 591 113 HOH HOH . G 7 HOH A 92 592 64 HOH HOH . G 7 HOH A 93 593 115 HOH HOH . G 7 HOH A 94 594 71 HOH HOH . G 7 HOH A 95 595 111 HOH HOH . G 7 HOH A 96 596 118 HOH HOH . G 7 HOH A 97 597 12 HOH HOH . G 7 HOH A 98 598 95 HOH HOH . G 7 HOH A 99 599 87 HOH HOH . G 7 HOH A 100 600 90 HOH HOH . G 7 HOH A 101 601 7 HOH HOH . G 7 HOH A 102 602 132 HOH HOH . G 7 HOH A 103 603 34 HOH HOH . G 7 HOH A 104 604 99 HOH HOH . G 7 HOH A 105 605 5 HOH HOH . G 7 HOH A 106 606 26 HOH HOH . G 7 HOH A 107 607 14 HOH HOH . G 7 HOH A 108 608 55 HOH HOH . G 7 HOH A 109 609 127 HOH HOH . G 7 HOH A 110 610 104 HOH HOH . G 7 HOH A 111 611 106 HOH HOH . G 7 HOH A 112 612 44 HOH HOH . G 7 HOH A 113 613 17 HOH HOH . G 7 HOH A 114 614 37 HOH HOH . G 7 HOH A 115 615 80 HOH HOH . G 7 HOH A 116 616 63 HOH HOH . G 7 HOH A 117 617 119 HOH HOH . G 7 HOH A 118 618 98 HOH HOH . G 7 HOH A 119 619 3 HOH HOH . G 7 HOH A 120 620 30 HOH HOH . G 7 HOH A 121 621 1 HOH HOH . G 7 HOH A 122 622 85 HOH HOH . G 7 HOH A 123 623 96 HOH HOH . G 7 HOH A 124 624 27 HOH HOH . G 7 HOH A 125 625 108 HOH HOH . G 7 HOH A 126 626 81 HOH HOH . G 7 HOH A 127 627 92 HOH HOH . G 7 HOH A 128 628 21 HOH HOH . G 7 HOH A 129 629 40 HOH HOH . H 7 HOH B 1 101 109 HOH HOH . H 7 HOH B 2 102 116 HOH HOH . I 7 HOH C 1 201 16 HOH HOH . I 7 HOH C 2 202 56 HOH HOH . I 7 HOH C 3 203 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MUB . . . F 6 13.307 -10.168 16.077 1 31.37 ? C1 MUB 101 C 1 HETATM 2 C C2 MUB . . . F 6 13.626 -9.177 17.197 1 31.47 ? C2 MUB 101 C 1 HETATM 3 C C3 MUB . . . F 6 14.579 -8.101 16.675 1 33.53 ? C3 MUB 101 C 1 HETATM 4 C C4 MUB . . . F 6 15.761 -8.725 15.94 1 31.98 ? C4 MUB 101 C 1 HETATM 5 C C5 MUB . . . F 6 15.225 -9.596 14.809 1 31.54 ? C5 MUB 101 C 1 HETATM 6 C C6 MUB . . . F 6 16.296 -10.244 13.964 1 35.33 ? C6 MUB 101 C 1 HETATM 7 C C7 MUB . . . F 6 11.802 -9 18.827 1 35.74 ? C7 MUB 101 C 1 HETATM 8 C C8 MUB . . . F 6 10.474 -8.384 19.156 1 34.71 ? C8 MUB 101 C 1 HETATM 9 C C9 MUB . . . F 6 14.252 -6.116 18.025 1 34.64 ? C9 MUB 101 C 1 HETATM 10 C C10 MUB . . . F 6 13.488 -6.211 19.35 1 38.75 ? C10 MUB 101 C 1 HETATM 11 C C11 MUB . . . F 6 15.206 -4.942 18.012 1 34.94 ? C11 MUB 101 C 1 HETATM 12 O O1 MUB . . . F 6 12.615 -9.427 15.128 1 29.39 ? O1 MUB 101 C 1 HETATM 13 O O3 MUB . . . F 6 15.016 -7.303 17.78 1 36.24 ? O3 MUB 101 C 1 HETATM 14 O O4 MUB . . . F 6 16.579 -7.718 15.356 1 34.33 ? O4 MUB 101 C 1 HETATM 15 O O5 MUB . . . F 6 14.452 -10.658 15.398 1 32.34 ? O5 MUB 101 C 1 HETATM 16 O O6 MUB . . . F 6 16.962 -11.274 14.672 1 39.49 ? O6 MUB 101 C 1 HETATM 17 O O7 MUB . . . F 6 12.343 -9.806 19.581 1 39.03 ? O7 MUB 101 C 1 HETATM 18 O O10 MUB . . . F 6 12.369 -5.644 19.422 1 38.21 ? O10 MUB 101 C 1 HETATM 19 N N2 MUB . . . F 6 12.368 -8.63 17.67 1 30.88 ? N2 MUB 101 C 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #