data_7Z67 # _model_server_result.job_id aUTcyApgsQHo6SyLa-QFIw _model_server_result.datetime_utc '2025-03-13 17:49:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7Z67 # _exptl.entry_id 7Z67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Z67 _cell.length_a 93.37 _cell.length_b 93.37 _cell.length_c 266.327 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 72 A PHE 88 1_555 A N MSE 73 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 73 A MSE 89 1_555 A N PRO 74 A PRO 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C ASN 80 A ASN 96 1_555 A N MSE 81 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 81 A MSE 97 1_555 A N ASP 82 A ASP 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C PRO 203 A PRO 219 1_555 A N MSE 204 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 204 A MSE 220 1_555 A N TYR 205 A TYR 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C GLN 247 A GLN 263 1_555 A N MSE 248 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 248 A MSE 264 1_555 A N LYS 249 A LYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C ARG 283 A ARG 299 1_555 A N MSE 284 A MSE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 284 A MSE 300 1_555 A N ARG 285 A ARG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C LEU 293 A LEU 309 1_555 A N MSE 294 A MSE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 294 A MSE 310 1_555 A N PHE 295 A PHE 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C LEU 322 A LEU 338 1_555 A N MSE 323 A MSE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 323 A MSE 339 1_555 A N ALA 324 A ALA 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A OH TYR 267 A TYR 283 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc2 B O3 CIT . A CIT 501 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 121 n n C1 O2 CIT sing 122 n n C1 C2 CIT sing 123 n n O2 HO2 CIT sing 124 n n C2 C3 CIT sing 125 n n C2 H21 CIT sing 126 n n C2 H22 CIT sing 127 n n C3 O7 CIT sing 128 n n C3 C4 CIT sing 129 n n C3 C6 CIT sing 130 n n O7 HO7 CIT sing 131 n n C4 C5 CIT sing 132 n n C4 H41 CIT sing 133 n n C4 H42 CIT sing 134 n n C5 O3 CIT doub 135 n n C5 O4 CIT sing 136 n n O4 HO4 CIT sing 137 n n C6 O5 CIT doub 138 n n C6 O6 CIT sing 139 n n O6 HO6 CIT sing 140 n n # _atom_sites.entry_id 7Z67 _atom_sites.fract_transf_matrix[1][1] 0.01071 _atom_sites.fract_transf_matrix[1][2] 0.006183 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 501 602 CIT CIT . C 3 EDO A 1 502 603 EDO EDO . D 4 ACP A 1 503 604 ACP ACP . E 5 MG A 1 504 1 MG MG . F 6 NA A 1 505 1 NA NA . G 7 HOH A 1 601 2 HOH HOH . G 7 HOH A 2 602 4 HOH HOH . G 7 HOH A 3 603 3 HOH HOH . G 7 HOH A 4 604 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 -12.75 18.197 -3.235 1 89.3 ? C1 CIT 501 A 1 HETATM 2 O O1 CIT . . . B 2 -13.892 17.693 -3.343 1 67.77 ? O1 CIT 501 A 1 HETATM 3 O O2 CIT . . . B 2 -12.425 18.75 -2.158 1 97.66 ? O2 CIT 501 A 1 HETATM 4 C C2 CIT . . . B 2 -11.795 18.143 -4.404 1 74.9 ? C2 CIT 501 A 1 HETATM 5 C C3 CIT . . . B 2 -10.97 16.859 -4.381 1 88.51 ? C3 CIT 501 A 1 HETATM 6 O O7 CIT . . . B 2 -11.634 15.89 -5.23 1 93.83 ? O7 CIT 501 A 1 HETATM 7 C C4 CIT . . . B 2 -9.551 17.081 -4.884 1 81.48 ? C4 CIT 501 A 1 HETATM 8 C C5 CIT . . . B 2 -9.036 15.789 -5.477 1 83.51 ? C5 CIT 501 A 1 HETATM 9 O O3 CIT . . . B 2 -9.817 14.851 -5.752 1 83.97 ? O3 CIT 501 A 1 HETATM 10 O O4 CIT . . . B 2 -7.815 15.63 -5.689 1 90.82 ? O4 CIT 501 A 1 HETATM 11 C C6 CIT . . . B 2 -10.894 16.309 -2.969 1 78.82 ? C6 CIT 501 A 1 HETATM 12 O O5 CIT . . . B 2 -11.752 15.509 -2.541 1 80.74 ? O5 CIT 501 A 1 HETATM 13 O O6 CIT . . . B 2 -9.962 16.666 -2.217 1 83.78 ? O6 CIT 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #