data_7Z6A # _model_server_result.job_id sl-rJHX919a-TPKerVs1Cw _model_server_result.datetime_utc '2024-11-16 18:27:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7Z6A # _exptl.entry_id 7Z6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.65 _cell.angle_gamma 90 _cell.entry_id 7Z6A _cell.length_a 41.9 _cell.length_b 100.88 _cell.length_c 44.29 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E PB UDP . A UDP 402 1_555 F O1 MUB . C MUB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.563 ? covale ? covale2 B C ALA 1 C ALA 3 1_555 B N FGA 2 C FGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.234 ? covale ? covale3 B N ALA 1 C ALA 3 1_555 F C10 MUB . C MUB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 B CD FGA 2 C FGA 4 1_555 B N CYS 3 C CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale5 B C CYS 3 C CYS 5 1_555 B N DAL 4 C DAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B SG CYS 3 C CYS 5 1_555 C C7T A9Z 8 B A9Z 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? covale ? covale7 B C DAL 4 C DAL 6 1_555 B N DAL 5 C DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 C O3' GF2 1 B GF2 1 1_555 C P GF2 2 B GF2 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale9 C O3' CFZ 3 B CFZ 5 1_555 C P CFZ 4 B CFZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale10 C O3' CFZ 4 B CFZ 6 1_555 C P AF2 5 B AF2 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale11 C O3' AF2 5 B AF2 7 1_555 C P CFZ 6 B CFZ 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? covale ? covale12 C O3' CFZ 6 B CFZ 8 1_555 C P CFZ 7 B CFZ 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale13 C O3' CFZ 7 B CFZ 9 1_555 C P A9Z 8 B A9Z 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? hydrog WATSON-CRICK hydrog1 C N1 GF2 1 B GF2 1 1_555 C N3 CFZ 4 B CFZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 GF2 1 B GF2 1 1_555 C O2 CFZ 4 B CFZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 GF2 1 B GF2 1 1_555 C N4 CFZ 4 B CFZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 322 n n C1 C2 GOL sing 323 n n C1 H11 GOL sing 324 n n C1 H12 GOL sing 325 n n O1 HO1 GOL sing 326 n n C2 O2 GOL sing 327 n n C2 C3 GOL sing 328 n n C2 H2 GOL sing 329 n n O2 HO2 GOL sing 330 n n C3 O3 GOL sing 331 n n C3 H31 GOL sing 332 n n C3 H32 GOL sing 333 n n O3 HO3 GOL sing 334 n n # _atom_sites.entry_id 7Z6A _atom_sites.fract_transf_matrix[1][1] 0.023866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008995 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 401 401 GOL GOL . E 5 UDP A 1 402 1 UDP UDP . F 6 MUB C 1 101 2 MUB MUB . G 7 HOH A 1 501 127 HOH HOH . G 7 HOH A 2 502 134 HOH HOH . G 7 HOH A 3 503 113 HOH HOH . G 7 HOH A 4 504 126 HOH HOH . G 7 HOH A 5 505 87 HOH HOH . G 7 HOH A 6 506 112 HOH HOH . G 7 HOH A 7 507 82 HOH HOH . G 7 HOH A 8 508 67 HOH HOH . G 7 HOH A 9 509 129 HOH HOH . G 7 HOH A 10 510 79 HOH HOH . G 7 HOH A 11 511 91 HOH HOH . G 7 HOH A 12 512 116 HOH HOH . G 7 HOH A 13 513 80 HOH HOH . G 7 HOH A 14 514 101 HOH HOH . G 7 HOH A 15 515 55 HOH HOH . G 7 HOH A 16 516 41 HOH HOH . G 7 HOH A 17 517 1 HOH HOH . G 7 HOH A 18 518 29 HOH HOH . G 7 HOH A 19 519 130 HOH HOH . G 7 HOH A 20 520 98 HOH HOH . G 7 HOH A 21 521 131 HOH HOH . G 7 HOH A 22 522 4 HOH HOH . G 7 HOH A 23 523 6 HOH HOH . G 7 HOH A 24 524 90 HOH HOH . G 7 HOH A 25 525 86 HOH HOH . G 7 HOH A 26 526 18 HOH HOH . G 7 HOH A 27 527 42 HOH HOH . G 7 HOH A 28 528 45 HOH HOH . G 7 HOH A 29 529 56 HOH HOH . G 7 HOH A 30 530 75 HOH HOH . G 7 HOH A 31 531 107 HOH HOH . G 7 HOH A 32 532 89 HOH HOH . G 7 HOH A 33 533 28 HOH HOH . G 7 HOH A 34 534 65 HOH HOH . G 7 HOH A 35 535 77 HOH HOH . G 7 HOH A 36 536 11 HOH HOH . G 7 HOH A 37 537 78 HOH HOH . G 7 HOH A 38 538 38 HOH HOH . G 7 HOH A 39 539 2 HOH HOH . G 7 HOH A 40 540 57 HOH HOH . G 7 HOH A 41 541 71 HOH HOH . G 7 HOH A 42 542 49 HOH HOH . G 7 HOH A 43 543 15 HOH HOH . G 7 HOH A 44 544 88 HOH HOH . G 7 HOH A 45 545 58 HOH HOH . G 7 HOH A 46 546 103 HOH HOH . G 7 HOH A 47 547 17 HOH HOH . G 7 HOH A 48 548 25 HOH HOH . G 7 HOH A 49 549 16 HOH HOH . G 7 HOH A 50 550 52 HOH HOH . G 7 HOH A 51 551 59 HOH HOH . G 7 HOH A 52 552 44 HOH HOH . G 7 HOH A 53 553 128 HOH HOH . G 7 HOH A 54 554 76 HOH HOH . G 7 HOH A 55 555 97 HOH HOH . G 7 HOH A 56 556 35 HOH HOH . G 7 HOH A 57 557 31 HOH HOH . G 7 HOH A 58 558 119 HOH HOH . G 7 HOH A 59 559 105 HOH HOH . G 7 HOH A 60 560 3 HOH HOH . G 7 HOH A 61 561 109 HOH HOH . G 7 HOH A 62 562 12 HOH HOH . G 7 HOH A 63 563 62 HOH HOH . G 7 HOH A 64 564 84 HOH HOH . G 7 HOH A 65 565 13 HOH HOH . G 7 HOH A 66 566 73 HOH HOH . G 7 HOH A 67 567 53 HOH HOH . G 7 HOH A 68 568 114 HOH HOH . G 7 HOH A 69 569 39 HOH HOH . G 7 HOH A 70 570 66 HOH HOH . G 7 HOH A 71 571 9 HOH HOH . G 7 HOH A 72 572 33 HOH HOH . G 7 HOH A 73 573 133 HOH HOH . G 7 HOH A 74 574 20 HOH HOH . G 7 HOH A 75 575 14 HOH HOH . G 7 HOH A 76 576 132 HOH HOH . G 7 HOH A 77 577 50 HOH HOH . G 7 HOH A 78 578 85 HOH HOH . G 7 HOH A 79 579 51 HOH HOH . G 7 HOH A 80 580 99 HOH HOH . G 7 HOH A 81 581 83 HOH HOH . G 7 HOH A 82 582 121 HOH HOH . G 7 HOH A 83 583 24 HOH HOH . G 7 HOH A 84 584 10 HOH HOH . G 7 HOH A 85 585 106 HOH HOH . G 7 HOH A 86 586 63 HOH HOH . G 7 HOH A 87 587 64 HOH HOH . G 7 HOH A 88 588 37 HOH HOH . G 7 HOH A 89 589 30 HOH HOH . G 7 HOH A 90 590 122 HOH HOH . G 7 HOH A 91 591 118 HOH HOH . G 7 HOH A 92 592 61 HOH HOH . G 7 HOH A 93 593 36 HOH HOH . G 7 HOH A 94 594 27 HOH HOH . G 7 HOH A 95 595 74 HOH HOH . G 7 HOH A 96 596 68 HOH HOH . G 7 HOH A 97 597 96 HOH HOH . G 7 HOH A 98 598 95 HOH HOH . G 7 HOH A 99 599 94 HOH HOH . G 7 HOH A 100 600 32 HOH HOH . G 7 HOH A 101 601 110 HOH HOH . G 7 HOH A 102 602 92 HOH HOH . G 7 HOH A 103 603 93 HOH HOH . G 7 HOH A 104 604 111 HOH HOH . G 7 HOH A 105 605 81 HOH HOH . G 7 HOH A 106 606 21 HOH HOH . G 7 HOH A 107 607 40 HOH HOH . G 7 HOH A 108 608 100 HOH HOH . G 7 HOH A 109 609 22 HOH HOH . G 7 HOH A 110 610 54 HOH HOH . G 7 HOH A 111 611 26 HOH HOH . G 7 HOH A 112 612 72 HOH HOH . G 7 HOH A 113 613 48 HOH HOH . G 7 HOH A 114 614 5 HOH HOH . G 7 HOH A 115 615 34 HOH HOH . G 7 HOH A 116 616 7 HOH HOH . G 7 HOH A 117 617 117 HOH HOH . G 7 HOH A 118 618 60 HOH HOH . G 7 HOH A 119 619 47 HOH HOH . G 7 HOH A 120 620 124 HOH HOH . G 7 HOH A 121 621 104 HOH HOH . G 7 HOH A 122 622 70 HOH HOH . G 7 HOH A 123 623 23 HOH HOH . G 7 HOH A 124 624 125 HOH HOH . G 7 HOH A 125 625 123 HOH HOH . G 7 HOH A 126 626 43 HOH HOH . G 7 HOH A 127 627 120 HOH HOH . G 7 HOH A 128 628 102 HOH HOH . G 7 HOH A 129 629 69 HOH HOH . G 7 HOH A 130 630 46 HOH HOH . H 7 HOH C 1 201 8 HOH HOH . I 7 HOH B 1 101 19 HOH HOH . I 7 HOH B 2 102 108 HOH HOH . I 7 HOH B 3 103 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -17.99 -4.435 3.135 1 27.13 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . D 4 -16.651 -4.717 2.903 1 27.76 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . D 4 -18.25 -4.46 4.688 1 25.79 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . D 4 -19.465 -3.807 5.022 1 26.09 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . D 4 -18.324 -5.965 5.043 1 19.92 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . D 4 -18.333 -6.043 6.437 1 21.98 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #