data_7Z7H # _model_server_result.job_id V41ThQy7soo4g_0SGcyN0w _model_server_result.datetime_utc '2024-10-25 20:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7z7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 7Z7H # _exptl.entry_id 7Z7H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 559.316 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Z7H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Z7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 74 D GLU 72 1_555 A N HIC 75 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C HIC 75 D HIC 73 1_555 A N GLY 76 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A OG1 THR 150 D THR 148 1_555 I C1D APR . D APR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 C C GLU 74 B GLU 72 1_555 C N HIC 75 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C HIC 75 B HIC 73 1_555 C N GLY 76 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 D C GLU 74 E GLU 72 1_555 D N HIC 75 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D C HIC 75 E HIC 73 1_555 D N GLY 76 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 E C GLU 74 C GLU 72 1_555 E N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 E C HIC 75 C HIC 73 1_555 E N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale10 F C GLU 74 A GLU 72 1_555 F N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 F C HIC 75 A HIC 73 1_555 F N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? metalc ? metalc1 G O1B ADP . D ADP 401 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc2 G O1A ADP . D ADP 401 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc3 G O3A ADP . D ADP 401 1_555 H MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc4 K O1B ADP . B ADP 401 1_555 L MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc5 K O3B ADP . B ADP 401 1_555 L MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc6 K O1A ADP . B ADP 401 1_555 L MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc7 K O3A ADP . B ADP 401 1_555 L MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc8 M O1B ADP . E ADP 401 1_555 N MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc9 M O3B ADP . E ADP 401 1_555 N MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc10 M O3A ADP . E ADP 401 1_555 N MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc11 O O1B ADP . C ADP 401 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc12 O O3B ADP . C ADP 401 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc13 O O3A ADP . C ADP 401 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc14 Q O1B ADP . A ADP 401 1_555 R MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc15 Q O3B ADP . A ADP 401 1_555 R MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc16 Q O3A ADP . A ADP 401 1_555 R MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Z7H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ADP D 1 401 401 ADP ADP . H 4 MG D 1 402 402 MG MG . I 5 APR D 1 403 403 APR AR6 . J 6 NCA F 1 300 300 NCA LIG . K 3 ADP B 1 401 401 ADP ADP . L 4 MG B 1 402 402 MG MG . M 3 ADP E 1 401 401 ADP ADP . N 4 MG E 1 402 402 MG MG . O 3 ADP C 1 401 401 ADP ADP . P 4 MG C 1 402 402 MG MG . Q 3 ADP A 1 401 401 ADP ADP . R 4 MG A 1 402 402 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . I 5 109.127 149.271 137.313 1 165.29 ? N1 APR 403 D 1 HETATM 2 C C2 APR . . . I 5 109.704 149.009 138.707 1 165.29 ? C2 APR 403 D 1 HETATM 3 N N3 APR . . . I 5 111.034 149.248 139.03 1 165.29 ? N3 APR 403 D 1 HETATM 4 C C4 APR . . . I 5 111.832 149.687 138.196 1 165.29 ? C4 APR 403 D 1 HETATM 5 C C5 APR . . . I 5 111.441 150.006 136.754 1 165.29 ? C5 APR 403 D 1 HETATM 6 C C6 APR . . . I 5 110.118 149.814 136.286 1 165.29 ? C6 APR 403 D 1 HETATM 7 N N6 APR . . . I 5 109.741 150.138 134.853 1 165.29 ? N6 APR 403 D 1 HETATM 8 N N7 APR . . . I 5 112.749 150.5 136.181 1 165.29 ? N7 APR 403 D 1 HETATM 9 C C8 APR . . . I 5 113.668 150.488 137 1 165.29 ? C8 APR 403 D 1 HETATM 10 N N9 APR . . . I 5 113.246 150.074 138.123 1 165.29 ? N9 APR 403 D 1 HETATM 11 C C1' APR . . . I 5 114.115 149.936 139.272 1 165.29 ? C1' APR 403 D 1 HETATM 12 C C2' APR . . . I 5 114.123 151.209 140.106 1 165.29 ? C2' APR 403 D 1 HETATM 13 O O2' APR . . . I 5 115.465 151.932 139.805 1 165.29 ? O2' APR 403 D 1 HETATM 14 C C3' APR . . . I 5 114.112 150.803 141.531 1 165.29 ? C3' APR 403 D 1 HETATM 15 O O3' APR . . . I 5 115.38 151.386 142.229 1 165.29 ? O3' APR 403 D 1 HETATM 16 O O4' APR . . . I 5 113.55 148.69 140.175 1 165.29 ? O4' APR 403 D 1 HETATM 17 C C4' APR . . . I 5 114.158 149.269 141.574 1 165.29 ? C4' APR 403 D 1 HETATM 18 C C5' APR . . . I 5 113.328 148.759 142.754 1 165.29 ? C5' APR 403 D 1 HETATM 19 O O5' APR . . . I 5 113.56 149.623 143.911 1 165.29 ? O5' APR 403 D 1 HETATM 20 P PA APR . . . I 5 115.061 149.416 144.729 1 165.29 ? PA APR 403 D 1 HETATM 21 O O1A APR . . . I 5 116.245 149.352 143.765 1 165.29 ? O1A APR 403 D 1 HETATM 22 O O2A APR . . . I 5 115.343 150.553 145.712 1 165.29 ? O2A APR 403 D 1 HETATM 23 O O3A APR . . . I 5 114.847 147.885 145.463 1 165.29 ? O3A APR 403 D 1 HETATM 24 P PB APR . . . I 5 113.561 147.659 146.577 1 165.29 ? PB APR 403 D 1 HETATM 25 O O1B APR . . . I 5 112.19 147.972 145.978 1 165.29 ? O1B APR 403 D 1 HETATM 26 O O2B APR . . . I 5 113.567 146.203 147.058 1 165.29 ? O2B APR 403 D 1 HETATM 27 O O5D APR . . . I 5 113.842 148.766 147.77 1 165.29 ? O5D APR 403 D 1 HETATM 28 C C5D APR . . . I 5 114.956 148.776 148.639 1 165.29 ? C5D APR 403 D 1 HETATM 29 O O4D APR . . . I 5 116.249 147.165 149.942 1 165.29 ? O4D APR 403 D 1 HETATM 30 C C1D APR . . . I 5 116.015 145.983 150.609 1 165.29 ? C1D APR 403 D 1 HETATM 31 O O2D APR . . . I 5 113.872 145.113 151.722 1 165.29 ? O2D APR 403 D 1 HETATM 32 C C2D APR . . . I 5 114.638 146.243 151.352 1 165.29 ? C2D APR 403 D 1 HETATM 33 O O3D APR . . . I 5 112.861 146.321 149.69 1 165.29 ? O3D APR 403 D 1 HETATM 34 C C3D APR . . . I 5 113.909 147.075 150.303 1 165.29 ? C3D APR 403 D 1 HETATM 35 C C4D APR . . . I 5 115.038 147.417 149.303 1 165.29 ? C4D APR 403 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #