data_7Z8A
#
_model_server_result.job_id            x5rVjQ5LcfQ1Z7SKY_KtrA 
_model_server_result.datetime_utc      '2024-10-19 13:24:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7z8a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1011}' 
#
_entry.id    7Z8A 
#
_exptl.entry_id    7Z8A 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Z8A 
_cell.length_a            68.565 
_cell.length_b            68.565 
_cell.length_c            83.195 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7Z8A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/4 0 -1 0 -1 0 0 0 0 -1 0 0 20.79875 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 94 AAA CYS 238 1_555 A SG CYS 105 AAA CYS 249 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc1 A OD2 ASP 114 AAA ASP 258 1_555 J LI LI . AAA LI 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc2 J LI LI . AAA LI 1009 1_555 S O HOH . AAA HOH 1135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7Z8A 
_atom_sites.fract_transf_matrix[1][1]    0.014585 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01202 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NO3 AAA 1 1001 1001 NO3 NO3 . 
C 2 NO3 AAA 1 1002 1002 NO3 NO3 . 
D 2 NO3 AAA 1 1003 1003 NO3 NO3 . 
E 2 NO3 AAA 1 1004 1004 NO3 NO3 . 
F 2 NO3 AAA 1 1005 1005 NO3 NO3 . 
G 2 NO3 AAA 1 1006 1006 NO3 NO3 . 
H 2 NO3 AAA 1 1007 1007 NO3 NO3 . 
I 2 NO3 AAA 1 1008 1008 NO3 NO3 . 
J 3 LI AAA 1 1009 1101 LI LI . 
K 4 EDO AAA 1 1010 1201 EDO EDO . 
L 4 EDO AAA 1 1011 1202 EDO EDO . 
M 4 EDO AAA 1 1012 1203 EDO EDO . 
N 4 EDO AAA 1 1013 1204 EDO EDO . 
O 4 EDO AAA 1 1014 1205 EDO EDO . 
P 5 PGO AAA 1 1015 1301 PGO PGO . 
Q 5 PGO AAA 1 1016 1302 PGO PGO . 
R 5 PGO AAA 1 1017 1303 PGO PGO . 
S 6 HOH AAA 1 1101 2019 HOH HOH . 
S 6 HOH AAA 2 1102 2038 HOH HOH . 
S 6 HOH AAA 3 1103 2011 HOH HOH . 
S 6 HOH AAA 4 1104 2023 HOH HOH . 
S 6 HOH AAA 5 1105 2039 HOH HOH . 
S 6 HOH AAA 6 1106 2015 HOH HOH . 
S 6 HOH AAA 7 1107 2007 HOH HOH . 
S 6 HOH AAA 8 1108 2024 HOH HOH . 
S 6 HOH AAA 9 1109 2026 HOH HOH . 
S 6 HOH AAA 10 1110 2001 HOH HOH . 
S 6 HOH AAA 11 1111 2004 HOH HOH . 
S 6 HOH AAA 12 1112 2012 HOH HOH . 
S 6 HOH AAA 13 1113 2013 HOH HOH . 
S 6 HOH AAA 14 1114 2028 HOH HOH . 
S 6 HOH AAA 15 1115 2006 HOH HOH . 
S 6 HOH AAA 16 1116 2021 HOH HOH . 
S 6 HOH AAA 17 1117 2010 HOH HOH . 
S 6 HOH AAA 18 1118 2014 HOH HOH . 
S 6 HOH AAA 19 1119 2008 HOH HOH . 
S 6 HOH AAA 20 1120 2036 HOH HOH . 
S 6 HOH AAA 21 1121 2020 HOH HOH . 
S 6 HOH AAA 22 1122 2045 HOH HOH . 
S 6 HOH AAA 23 1123 2018 HOH HOH . 
S 6 HOH AAA 24 1124 2022 HOH HOH . 
S 6 HOH AAA 25 1125 2005 HOH HOH . 
S 6 HOH AAA 26 1126 2003 HOH HOH . 
S 6 HOH AAA 27 1127 2046 HOH HOH . 
S 6 HOH AAA 28 1128 2016 HOH HOH . 
S 6 HOH AAA 29 1129 2043 HOH HOH . 
S 6 HOH AAA 30 1130 2032 HOH HOH . 
S 6 HOH AAA 31 1131 2034 HOH HOH . 
S 6 HOH AAA 32 1132 2002 HOH HOH . 
S 6 HOH AAA 33 1133 2017 HOH HOH . 
S 6 HOH AAA 34 1134 2044 HOH HOH . 
S 6 HOH AAA 35 1135 2037 HOH HOH . 
S 6 HOH AAA 36 1136 2025 HOH HOH . 
S 6 HOH AAA 37 1137 2040 HOH HOH . 
S 6 HOH AAA 38 1138 2009 HOH HOH . 
S 6 HOH AAA 39 1139 2042 HOH HOH . 
S 6 HOH AAA 40 1140 2048 HOH HOH . 
S 6 HOH AAA 41 1141 2031 HOH HOH . 
S 6 HOH AAA 42 1142 2029 HOH HOH . 
S 6 HOH AAA 43 1143 2047 HOH HOH . 
S 6 HOH AAA 44 1144 2030 HOH HOH . 
S 6 HOH AAA 45 1145 2035 HOH HOH . 
S 6 HOH AAA 46 1146 2027 HOH HOH . 
S 6 HOH AAA 47 1147 2033 HOH HOH . 
S 6 HOH AAA 48 1148 2041 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 4 -8.202 13.162 -3.021 1 59.71 0 C1 EDO 1011 AAA 1 
HETATM 2 O O1 EDO . . . L 4 -7.323 12.511 -2.115 1 61.82 0 O1 EDO 1011 AAA 1 
HETATM 3 C C2 EDO . . . L 4 -9.104 14.067 -2.262 1 68.54 0 C2 EDO 1011 AAA 1 
HETATM 4 O O2 EDO . . . L 4 -10.278 14.549 -2.898 1 58.37 0 O2 EDO 1011 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           4 
#